Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT tih_rna_sample_00116_23H5VFLT4_s36.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00116_23H5VFLT4_s36.md.bam --METRICS_FILE tih_rna_sample_00116_23H5VFLT4_s36.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:20:43.030 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:20:43 GMT 2026] MarkDuplicates --INPUT tih_rna_sample_00116_23H5VFLT4_s36.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00116_23H5VFLT4_s36.md.bam --METRICS_FILE tih_rna_sample_00116_23H5VFLT4_s36.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:20:43 GMT 2026] Executing as ?@nf-6fa5cf25751b0cc7ff57533a36fa5486-6d6be-nsnmb on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:20:43 MarkDuplicates Start of doWork freeMemory: 105828184; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:20:43 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:20:43 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:20:47 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,296,530
INFO 2026-06-08 08:20:47 MarkDuplicates Tracking 774 as yet unmatched pairs. 53 records in RAM.
INFO 2026-06-08 08:20:49 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 1s. Last read position: chr1:2,402,289
INFO 2026-06-08 08:20:49 MarkDuplicates Tracking 2161 as yet unmatched pairs. 504 records in RAM.
INFO 2026-06-08 08:20:50 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:8,013,556
INFO 2026-06-08 08:20:50 MarkDuplicates Tracking 2688 as yet unmatched pairs. 127 records in RAM.
INFO 2026-06-08 08:20:52 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:10,296,970
INFO 2026-06-08 08:20:52 MarkDuplicates Tracking 3447 as yet unmatched pairs. 48 records in RAM.
INFO 2026-06-08 08:20:54 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:12,271,099
INFO 2026-06-08 08:20:54 MarkDuplicates Tracking 4520 as yet unmatched pairs. 312 records in RAM.
INFO 2026-06-08 08:20:56 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:16,253,102
INFO 2026-06-08 08:20:56 MarkDuplicates Tracking 4998 as yet unmatched pairs. 59 records in RAM.
INFO 2026-06-08 08:20:58 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:19,162,442
INFO 2026-06-08 08:20:58 MarkDuplicates Tracking 5742 as yet unmatched pairs. 152 records in RAM.
INFO 2026-06-08 08:21:00 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:21,272,719
INFO 2026-06-08 08:21:00 MarkDuplicates Tracking 6548 as yet unmatched pairs. 224 records in RAM.
INFO 2026-06-08 08:21:02 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:22,636,687
INFO 2026-06-08 08:21:02 MarkDuplicates Tracking 8068 as yet unmatched pairs. 868 records in RAM.
INFO 2026-06-08 08:21:04 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:22,647,447
INFO 2026-06-08 08:21:04 MarkDuplicates Tracking 8521 as yet unmatched pairs. 323 records in RAM.
INFO 2026-06-08 08:21:05 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:23,817,566
INFO 2026-06-08 08:21:05 MarkDuplicates Tracking 9007 as yet unmatched pairs. 55 records in RAM.
INFO 2026-06-08 08:21:07 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:26,729,682
INFO 2026-06-08 08:21:07 MarkDuplicates Tracking 9876 as yet unmatched pairs. 173 records in RAM.
INFO 2026-06-08 08:21:09 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:27,880,038
INFO 2026-06-08 08:21:09 MarkDuplicates Tracking 10855 as yet unmatched pairs. 237 records in RAM.
INFO 2026-06-08 08:21:11 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:31,267,913
INFO 2026-06-08 08:21:11 MarkDuplicates Tracking 11459 as yet unmatched pairs. 97 records in RAM.
INFO 2026-06-08 08:21:12 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:32,769,710
INFO 2026-06-08 08:21:12 MarkDuplicates Tracking 12469 as yet unmatched pairs. 173 records in RAM.
INFO 2026-06-08 08:21:14 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:36,013,963
INFO 2026-06-08 08:21:14 MarkDuplicates Tracking 13119 as yet unmatched pairs. 41 records in RAM.
INFO 2026-06-08 08:21:15 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:38,864,646
INFO 2026-06-08 08:21:15 MarkDuplicates Tracking 13964 as yet unmatched pairs. 72 records in RAM.
INFO 2026-06-08 08:21:17 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:39,526,206
INFO 2026-06-08 08:21:17 MarkDuplicates Tracking 14591 as yet unmatched pairs. 24 records in RAM.
INFO 2026-06-08 08:21:18 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:42,696,202
INFO 2026-06-08 08:21:18 MarkDuplicates Tracking 15701 as yet unmatched pairs. 306 records in RAM.
INFO 2026-06-08 08:21:19 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:43,598,730
INFO 2026-06-08 08:21:19 MarkDuplicates Tracking 17722 as yet unmatched pairs. 1471 records in RAM.
INFO 2026-06-08 08:21:22 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 2s. Last read position: chr1:45,014,473
INFO 2026-06-08 08:21:22 MarkDuplicates Tracking 17283 as yet unmatched pairs. 250 records in RAM.
INFO 2026-06-08 08:21:23 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:47,187,342
INFO 2026-06-08 08:21:23 MarkDuplicates Tracking 18650 as yet unmatched pairs. 867 records in RAM.
INFO 2026-06-08 08:21:25 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:53,923,905
INFO 2026-06-08 08:21:25 MarkDuplicates Tracking 18618 as yet unmatched pairs. 129 records in RAM.
INFO 2026-06-08 08:21:26 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:64,847,652
INFO 2026-06-08 08:21:26 MarkDuplicates Tracking 19582 as yet unmatched pairs. 398 records in RAM.
INFO 2026-06-08 08:21:27 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:84,144,460
INFO 2026-06-08 08:21:27 MarkDuplicates Tracking 20151 as yet unmatched pairs. 335 records in RAM.
INFO 2026-06-08 08:21:29 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:89,422,088
INFO 2026-06-08 08:21:29 MarkDuplicates Tracking 20514 as yet unmatched pairs. 39 records in RAM.
INFO 2026-06-08 08:21:30 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:100,274,846
INFO 2026-06-08 08:21:30 MarkDuplicates Tracking 21213 as yet unmatched pairs. 138 records in RAM.
INFO 2026-06-08 08:21:32 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:109,656,412
INFO 2026-06-08 08:21:32 MarkDuplicates Tracking 21967 as yet unmatched pairs. 143 records in RAM.
INFO 2026-06-08 08:21:33 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:112,701,540
INFO 2026-06-08 08:21:33 MarkDuplicates Tracking 24322 as yet unmatched pairs. 1716 records in RAM.
INFO 2026-06-08 08:21:35 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:116,754,881
INFO 2026-06-08 08:21:35 MarkDuplicates Tracking 23713 as yet unmatched pairs. 345 records in RAM.
INFO 2026-06-08 08:21:36 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:119,955,163
INFO 2026-06-08 08:21:36 MarkDuplicates Tracking 25270 as yet unmatched pairs. 1151 records in RAM.
INFO 2026-06-08 08:21:37 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:145,233,370
INFO 2026-06-08 08:21:37 MarkDuplicates Tracking 24570 as yet unmatched pairs. 25 records in RAM.
INFO 2026-06-08 08:21:39 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:147,612,919
INFO 2026-06-08 08:21:39 MarkDuplicates Tracking 24958 as yet unmatched pairs. 52 records in RAM.
INFO 2026-06-08 08:21:41 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:149,480,770
INFO 2026-06-08 08:21:41 MarkDuplicates Tracking 25252 as yet unmatched pairs. 85 records in RAM.
INFO 2026-06-08 08:21:42 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:150,470,684
INFO 2026-06-08 08:21:42 MarkDuplicates Tracking 25812 as yet unmatched pairs. 45 records in RAM.
INFO 2026-06-08 08:21:44 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:151,306,187
INFO 2026-06-08 08:21:44 MarkDuplicates Tracking 26645 as yet unmatched pairs. 118 records in RAM.
INFO 2026-06-08 08:21:45 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:153,932,256
INFO 2026-06-08 08:21:45 MarkDuplicates Tracking 27352 as yet unmatched pairs. 128 records in RAM.
INFO 2026-06-08 08:21:47 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:154,182,998
INFO 2026-06-08 08:21:47 MarkDuplicates Tracking 28475 as yet unmatched pairs. 533 records in RAM.
INFO 2026-06-08 08:21:48 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:154,968,778
INFO 2026-06-08 08:21:48 MarkDuplicates Tracking 29594 as yet unmatched pairs. 875 records in RAM.
INFO 2026-06-08 08:21:50 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:155,479,039
INFO 2026-06-08 08:21:50 MarkDuplicates Tracking 29538 as yet unmatched pairs. 84 records in RAM.
INFO 2026-06-08 08:21:51 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:156,137,689
INFO 2026-06-08 08:21:51 MarkDuplicates Tracking 31024 as yet unmatched pairs. 800 records in RAM.
INFO 2026-06-08 08:21:53 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:157,539,210
INFO 2026-06-08 08:21:53 MarkDuplicates Tracking 31065 as yet unmatched pairs. 53 records in RAM.
INFO 2026-06-08 08:21:54 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:160,554,024
INFO 2026-06-08 08:21:54 MarkDuplicates Tracking 31746 as yet unmatched pairs. 65 records in RAM.
INFO 2026-06-08 08:21:55 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:161,542,764
INFO 2026-06-08 08:21:55 MarkDuplicates Tracking 36225 as yet unmatched pairs. 3844 records in RAM.
INFO 2026-06-08 08:21:57 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:165,890,269
INFO 2026-06-08 08:21:57 MarkDuplicates Tracking 33107 as yet unmatched pairs. 143 records in RAM.
INFO 2026-06-08 08:21:58 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:171,783,875
INFO 2026-06-08 08:21:58 MarkDuplicates Tracking 33748 as yet unmatched pairs. 173 records in RAM.
INFO 2026-06-08 08:22:00 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:180,194,327
INFO 2026-06-08 08:22:00 MarkDuplicates Tracking 34471 as yet unmatched pairs. 211 records in RAM.
INFO 2026-06-08 08:22:01 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:183,235,672
INFO 2026-06-08 08:22:01 MarkDuplicates Tracking 35742 as yet unmatched pairs. 666 records in RAM.
INFO 2026-06-08 08:22:03 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:186,335,104
INFO 2026-06-08 08:22:03 MarkDuplicates Tracking 36382 as yet unmatched pairs. 546 records in RAM.
INFO 2026-06-08 08:22:04 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:200,848,449
INFO 2026-06-08 08:22:04 MarkDuplicates Tracking 36460 as yet unmatched pairs. 27 records in RAM.
INFO 2026-06-08 08:22:05 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:201,211,548
INFO 2026-06-08 08:22:05 MarkDuplicates Tracking 37294 as yet unmatched pairs. 148 records in RAM.
INFO 2026-06-08 08:22:08 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 2s. Last read position: chr1:202,167,204
INFO 2026-06-08 08:22:08 MarkDuplicates Tracking 38012 as yet unmatched pairs. 1 records in RAM.
INFO 2026-06-08 08:22:10 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:205,095,005
INFO 2026-06-08 08:22:10 MarkDuplicates Tracking 38712 as yet unmatched pairs. 55 records in RAM.
INFO 2026-06-08 08:22:11 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:207,770,283
INFO 2026-06-08 08:22:11 MarkDuplicates Tracking 40129 as yet unmatched pairs. 815 records in RAM.
INFO 2026-06-08 08:22:13 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:219,978,643
INFO 2026-06-08 08:22:13 MarkDuplicates Tracking 40074 as yet unmatched pairs. 69 records in RAM.
INFO 2026-06-08 08:22:14 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:225,517,592
INFO 2026-06-08 08:22:14 MarkDuplicates Tracking 40737 as yet unmatched pairs. 108 records in RAM.
INFO 2026-06-08 08:22:15 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:228,413,661
INFO 2026-06-08 08:22:15 MarkDuplicates Tracking 41482 as yet unmatched pairs. 12 records in RAM.
INFO 2026-06-08 08:22:17 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:235,693,402
INFO 2026-06-08 08:22:17 MarkDuplicates Tracking 42618 as yet unmatched pairs. 192 records in RAM.
INFO 2026-06-08 08:22:19 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:244,054,914
INFO 2026-06-08 08:22:19 MarkDuplicates Tracking 43476 as yet unmatched pairs. 309 records in RAM.
INFO 2026-06-08 08:22:20 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr2:3,498,969
INFO 2026-06-08 08:22:20 MarkDuplicates Tracking 44069 as yet unmatched pairs. 43449 records in RAM.
INFO 2026-06-08 08:22:22 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr2:11,795,406
INFO 2026-06-08 08:22:22 MarkDuplicates Tracking 44681 as yet unmatched pairs. 44051 records in RAM.
INFO 2026-06-08 08:22:23 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr2:24,706,880
INFO 2026-06-08 08:22:23 MarkDuplicates Tracking 45357 as yet unmatched pairs. 44700 records in RAM.
INFO 2026-06-08 08:22:25 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr2:27,085,742
INFO 2026-06-08 08:22:25 MarkDuplicates Tracking 46252 as yet unmatched pairs. 45590 records in RAM.
INFO 2026-06-08 08:22:26 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr2:28,776,853
INFO 2026-06-08 08:22:26 MarkDuplicates Tracking 48232 as yet unmatched pairs. 47559 records in RAM.
INFO 2026-06-08 08:22:28 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:22:28 MarkDuplicates Tracking 76762 as yet unmatched pairs. 45268 records in RAM.
INFO 2026-06-08 08:22:30 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:22:30 MarkDuplicates Tracking 401120 as yet unmatched pairs. 28647 records in RAM.
INFO 2026-06-08 08:22:32 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 2s. Last read position: chr2:38,482,498
INFO 2026-06-08 08:22:32 MarkDuplicates Tracking 429092 as yet unmatched pairs. 26691 records in RAM.
INFO 2026-06-08 08:22:33 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:43,577,102
INFO 2026-06-08 08:22:33 MarkDuplicates Tracking 428982 as yet unmatched pairs. 26558 records in RAM.
INFO 2026-06-08 08:22:35 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr2:47,798,729
INFO 2026-06-08 08:22:35 MarkDuplicates Tracking 427675 as yet unmatched pairs. 25244 records in RAM.
INFO 2026-06-08 08:22:36 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr2:55,234,856
INFO 2026-06-08 08:22:36 MarkDuplicates Tracking 427453 as yet unmatched pairs. 25004 records in RAM.
INFO 2026-06-08 08:22:38 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:63,857,828
INFO 2026-06-08 08:22:38 MarkDuplicates Tracking 426355 as yet unmatched pairs. 23895 records in RAM.
INFO 2026-06-08 08:22:39 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:70,087,837
INFO 2026-06-08 08:22:39 MarkDuplicates Tracking 425918 as yet unmatched pairs. 23450 records in RAM.
INFO 2026-06-08 08:22:41 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:73,986,676
INFO 2026-06-08 08:22:41 MarkDuplicates Tracking 424949 as yet unmatched pairs. 22477 records in RAM.
INFO 2026-06-08 08:22:42 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:84,906,405
INFO 2026-06-08 08:22:42 MarkDuplicates Tracking 424380 as yet unmatched pairs. 21896 records in RAM.
INFO 2026-06-08 08:22:44 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:86,790,510
INFO 2026-06-08 08:22:44 MarkDuplicates Tracking 424339 as yet unmatched pairs. 21844 records in RAM.
INFO 2026-06-08 08:22:45 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:89,268,212
INFO 2026-06-08 08:22:45 MarkDuplicates Tracking 422982 as yet unmatched pairs. 20481 records in RAM.
INFO 2026-06-08 08:22:47 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:97,439,225
INFO 2026-06-08 08:22:47 MarkDuplicates Tracking 422296 as yet unmatched pairs. 19783 records in RAM.
INFO 2026-06-08 08:22:48 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:105,071,472
INFO 2026-06-08 08:22:48 MarkDuplicates Tracking 421684 as yet unmatched pairs. 19152 records in RAM.
INFO 2026-06-08 08:22:50 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:108,766,514
INFO 2026-06-08 08:22:50 MarkDuplicates Tracking 421252 as yet unmatched pairs. 18715 records in RAM.
INFO 2026-06-08 08:22:51 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:111,120,973
INFO 2026-06-08 08:22:51 MarkDuplicates Tracking 420728 as yet unmatched pairs. 18189 records in RAM.
INFO 2026-06-08 08:22:52 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:113,217,981
INFO 2026-06-08 08:22:52 MarkDuplicates Tracking 421028 as yet unmatched pairs. 18481 records in RAM.
INFO 2026-06-08 08:22:54 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:118,974,424
INFO 2026-06-08 08:22:54 MarkDuplicates Tracking 419692 as yet unmatched pairs. 17136 records in RAM.
INFO 2026-06-08 08:22:56 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr2:130,172,875
INFO 2026-06-08 08:22:56 MarkDuplicates Tracking 419070 as yet unmatched pairs. 16503 records in RAM.
INFO 2026-06-08 08:22:58 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:136,115,774
INFO 2026-06-08 08:22:58 MarkDuplicates Tracking 419006 as yet unmatched pairs. 16435 records in RAM.
INFO 2026-06-08 08:22:59 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:157,286,121
INFO 2026-06-08 08:22:59 MarkDuplicates Tracking 417614 as yet unmatched pairs. 15032 records in RAM.
INFO 2026-06-08 08:23:00 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:166,284,653
INFO 2026-06-08 08:23:00 MarkDuplicates Tracking 417151 as yet unmatched pairs. 14562 records in RAM.
INFO 2026-06-08 08:23:02 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:174,571,769
INFO 2026-06-08 08:23:02 MarkDuplicates Tracking 417309 as yet unmatched pairs. 14701 records in RAM.
INFO 2026-06-08 08:23:03 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:178,768,930
INFO 2026-06-08 08:23:03 MarkDuplicates Tracking 415663 as yet unmatched pairs. 13042 records in RAM.
INFO 2026-06-08 08:23:05 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:187,484,899
INFO 2026-06-08 08:23:05 MarkDuplicates Tracking 415622 as yet unmatched pairs. 12977 records in RAM.
INFO 2026-06-08 08:23:06 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:189,053,456
INFO 2026-06-08 08:23:06 MarkDuplicates Tracking 414701 as yet unmatched pairs. 12053 records in RAM.
INFO 2026-06-08 08:23:08 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:190,979,817
INFO 2026-06-08 08:23:08 MarkDuplicates Tracking 414949 as yet unmatched pairs. 12287 records in RAM.
INFO 2026-06-08 08:23:10 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:199,936,721
INFO 2026-06-08 08:23:10 MarkDuplicates Tracking 412933 as yet unmatched pairs. 10265 records in RAM.
INFO 2026-06-08 08:23:11 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:203,959,734
INFO 2026-06-08 08:23:11 MarkDuplicates Tracking 412395 as yet unmatched pairs. 9722 records in RAM.
INFO 2026-06-08 08:23:12 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:215,361,613
INFO 2026-06-08 08:23:12 MarkDuplicates Tracking 415889 as yet unmatched pairs. 13207 records in RAM.
INFO 2026-06-08 08:23:14 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,191
INFO 2026-06-08 08:23:14 MarkDuplicates Tracking 420514 as yet unmatched pairs. 17827 records in RAM.
INFO 2026-06-08 08:23:16 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:215,378,175
INFO 2026-06-08 08:23:16 MarkDuplicates Tracking 415495 as yet unmatched pairs. 12804 records in RAM.
INFO 2026-06-08 08:23:17 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:215,386,747
INFO 2026-06-08 08:23:17 MarkDuplicates Tracking 411814 as yet unmatched pairs. 9123 records in RAM.
INFO 2026-06-08 08:23:18 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:215,399,282
INFO 2026-06-08 08:23:18 MarkDuplicates Tracking 411886 as yet unmatched pairs. 9192 records in RAM.
INFO 2026-06-08 08:23:20 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 2s. Last read position: chr2:215,409,933
INFO 2026-06-08 08:23:20 MarkDuplicates Tracking 410218 as yet unmatched pairs. 7524 records in RAM.
INFO 2026-06-08 08:23:22 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:215,428,179
INFO 2026-06-08 08:23:22 MarkDuplicates Tracking 410853 as yet unmatched pairs. 8154 records in RAM.
INFO 2026-06-08 08:23:24 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:216,660,628
INFO 2026-06-08 08:23:24 MarkDuplicates Tracking 407598 as yet unmatched pairs. 4898 records in RAM.
INFO 2026-06-08 08:23:25 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:218,642,755
INFO 2026-06-08 08:23:25 MarkDuplicates Tracking 406812 as yet unmatched pairs. 4108 records in RAM.
INFO 2026-06-08 08:23:27 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:222,927,078
INFO 2026-06-08 08:23:27 MarkDuplicates Tracking 405956 as yet unmatched pairs. 3190 records in RAM.
INFO 2026-06-08 08:23:28 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:229,836,916
INFO 2026-06-08 08:23:28 MarkDuplicates Tracking 405297 as yet unmatched pairs. 2525 records in RAM.
INFO 2026-06-08 08:23:30 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:232,839,847
INFO 2026-06-08 08:23:30 MarkDuplicates Tracking 404501 as yet unmatched pairs. 1724 records in RAM.
INFO 2026-06-08 08:23:31 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:237,525,703
INFO 2026-06-08 08:23:31 MarkDuplicates Tracking 403814 as yet unmatched pairs. 1030 records in RAM.
INFO 2026-06-08 08:23:33 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:241,337,381
INFO 2026-06-08 08:23:33 MarkDuplicates Tracking 403248 as yet unmatched pairs. 453 records in RAM.
INFO 2026-06-08 08:23:35 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr3:9,476,555
INFO 2026-06-08 08:23:35 MarkDuplicates Tracking 402223 as yet unmatched pairs. 22171 records in RAM.
INFO 2026-06-08 08:23:36 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr3:12,604,189
INFO 2026-06-08 08:23:36 MarkDuplicates Tracking 401851 as yet unmatched pairs. 21784 records in RAM.
INFO 2026-06-08 08:23:37 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr3:15,429,913
INFO 2026-06-08 08:23:37 MarkDuplicates Tracking 400727 as yet unmatched pairs. 20654 records in RAM.
INFO 2026-06-08 08:23:38 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr3:23,954,563
INFO 2026-06-08 08:23:38 MarkDuplicates Tracking 400404 as yet unmatched pairs. 20328 records in RAM.
INFO 2026-06-08 08:23:40 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr3:33,400,962
INFO 2026-06-08 08:23:40 MarkDuplicates Tracking 399858 as yet unmatched pairs. 19759 records in RAM.
INFO 2026-06-08 08:23:42 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr3:39,411,936
INFO 2026-06-08 08:23:42 MarkDuplicates Tracking 400769 as yet unmatched pairs. 20663 records in RAM.
INFO 2026-06-08 08:23:43 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr3:45,085,896
INFO 2026-06-08 08:23:43 MarkDuplicates Tracking 398647 as yet unmatched pairs. 18527 records in RAM.
INFO 2026-06-08 08:23:44 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr3:47,381,129
INFO 2026-06-08 08:23:44 MarkDuplicates Tracking 397739 as yet unmatched pairs. 17615 records in RAM.
INFO 2026-06-08 08:23:47 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 2s. Last read position: chr3:48,469,520
INFO 2026-06-08 08:23:47 MarkDuplicates Tracking 397547 as yet unmatched pairs. 17420 records in RAM.
INFO 2026-06-08 08:23:48 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr3:49,030,539
INFO 2026-06-08 08:23:48 MarkDuplicates Tracking 396204 as yet unmatched pairs. 16069 records in RAM.
INFO 2026-06-08 08:23:50 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr3:49,368,538
INFO 2026-06-08 08:23:50 MarkDuplicates Tracking 397035 as yet unmatched pairs. 16893 records in RAM.
INFO 2026-06-08 08:23:51 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr3:50,366,843
INFO 2026-06-08 08:23:51 MarkDuplicates Tracking 394520 as yet unmatched pairs. 14374 records in RAM.
INFO 2026-06-08 08:23:53 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr3:52,455,670
INFO 2026-06-08 08:23:53 MarkDuplicates Tracking 393828 as yet unmatched pairs. 13676 records in RAM.
INFO 2026-06-08 08:23:54 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr3:53,181,703
INFO 2026-06-08 08:23:54 MarkDuplicates Tracking 392950 as yet unmatched pairs. 12783 records in RAM.
INFO 2026-06-08 08:23:56 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr3:58,134,659
INFO 2026-06-08 08:23:56 MarkDuplicates Tracking 392241 as yet unmatched pairs. 12066 records in RAM.
INFO 2026-06-08 08:23:58 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 2s. Last read position: chr3:69,786,614
INFO 2026-06-08 08:23:58 MarkDuplicates Tracking 391915 as yet unmatched pairs. 11735 records in RAM.
INFO 2026-06-08 08:23:59 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr3:98,800,657
INFO 2026-06-08 08:23:59 MarkDuplicates Tracking 392394 as yet unmatched pairs. 12197 records in RAM.
INFO 2026-06-08 08:24:01 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr3:101,681,137
INFO 2026-06-08 08:24:01 MarkDuplicates Tracking 391516 as yet unmatched pairs. 11309 records in RAM.
INFO 2026-06-08 08:24:03 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr3:112,639,592
INFO 2026-06-08 08:24:03 MarkDuplicates Tracking 390008 as yet unmatched pairs. 9787 records in RAM.
INFO 2026-06-08 08:24:04 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:122,111,006
INFO 2026-06-08 08:24:04 MarkDuplicates Tracking 388854 as yet unmatched pairs. 8622 records in RAM.
INFO 2026-06-08 08:24:06 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:125,594,704
INFO 2026-06-08 08:24:06 MarkDuplicates Tracking 388062 as yet unmatched pairs. 7827 records in RAM.
INFO 2026-06-08 08:24:07 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:129,268,594
INFO 2026-06-08 08:24:07 MarkDuplicates Tracking 387502 as yet unmatched pairs. 7261 records in RAM.
INFO 2026-06-08 08:24:09 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 2s. Last read position: chr3:134,360,370
INFO 2026-06-08 08:24:09 MarkDuplicates Tracking 386711 as yet unmatched pairs. 6462 records in RAM.
INFO 2026-06-08 08:24:11 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr3:143,038,108
INFO 2026-06-08 08:24:11 MarkDuplicates Tracking 386027 as yet unmatched pairs. 5764 records in RAM.
INFO 2026-06-08 08:24:12 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr3:149,895,555
INFO 2026-06-08 08:24:12 MarkDuplicates Tracking 385201 as yet unmatched pairs. 4926 records in RAM.
INFO 2026-06-08 08:24:14 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:159,764,517
INFO 2026-06-08 08:24:14 MarkDuplicates Tracking 384579 as yet unmatched pairs. 4299 records in RAM.
INFO 2026-06-08 08:24:15 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:172,347,296
INFO 2026-06-08 08:24:15 MarkDuplicates Tracking 384065 as yet unmatched pairs. 3771 records in RAM.
INFO 2026-06-08 08:24:17 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:184,166,635
INFO 2026-06-08 08:24:17 MarkDuplicates Tracking 383627 as yet unmatched pairs. 3327 records in RAM.
INFO 2026-06-08 08:24:18 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:185,495,099
INFO 2026-06-08 08:24:18 MarkDuplicates Tracking 382536 as yet unmatched pairs. 2235 records in RAM.
INFO 2026-06-08 08:24:20 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:189,972,908
INFO 2026-06-08 08:24:20 MarkDuplicates Tracking 381909 as yet unmatched pairs. 1601 records in RAM.
INFO 2026-06-08 08:24:21 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:195,321,332
INFO 2026-06-08 08:24:21 MarkDuplicates Tracking 381073 as yet unmatched pairs. 758 records in RAM.
INFO 2026-06-08 08:24:23 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr4:128,454
INFO 2026-06-08 08:24:23 MarkDuplicates Tracking 380370 as yet unmatched pairs. 13983 records in RAM.
INFO 2026-06-08 08:24:24 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr4:1,739,706
INFO 2026-06-08 08:24:24 MarkDuplicates Tracking 380209 as yet unmatched pairs. 13817 records in RAM.
INFO 2026-06-08 08:24:26 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 2s. Last read position: chr4:3,317,392
INFO 2026-06-08 08:24:26 MarkDuplicates Tracking 378654 as yet unmatched pairs. 12255 records in RAM.
INFO 2026-06-08 08:24:27 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr4:9,532,536
INFO 2026-06-08 08:24:27 MarkDuplicates Tracking 377919 as yet unmatched pairs. 11502 records in RAM.
INFO 2026-06-08 08:24:29 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr4:25,377,453
INFO 2026-06-08 08:24:29 MarkDuplicates Tracking 377312 as yet unmatched pairs. 10876 records in RAM.
INFO 2026-06-08 08:24:30 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr4:39,121,023
INFO 2026-06-08 08:24:30 MarkDuplicates Tracking 376702 as yet unmatched pairs. 10253 records in RAM.
INFO 2026-06-08 08:24:32 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 2s. Last read position: chr4:48,851,815
INFO 2026-06-08 08:24:32 MarkDuplicates Tracking 376380 as yet unmatched pairs. 9911 records in RAM.
INFO 2026-06-08 08:24:34 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr4:57,040,915
INFO 2026-06-08 08:24:34 MarkDuplicates Tracking 377727 as yet unmatched pairs. 11237 records in RAM.
INFO 2026-06-08 08:24:36 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr4:73,836,677
INFO 2026-06-08 08:24:36 MarkDuplicates Tracking 374652 as yet unmatched pairs. 8155 records in RAM.
INFO 2026-06-08 08:24:38 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr4:76,191,932
INFO 2026-06-08 08:24:38 MarkDuplicates Tracking 374258 as yet unmatched pairs. 7746 records in RAM.
INFO 2026-06-08 08:24:39 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr4:82,829,012
INFO 2026-06-08 08:24:39 MarkDuplicates Tracking 373392 as yet unmatched pairs. 6874 records in RAM.
INFO 2026-06-08 08:24:41 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr4:87,975,791
INFO 2026-06-08 08:24:41 MarkDuplicates Tracking 384756 as yet unmatched pairs. 18221 records in RAM.
INFO 2026-06-08 08:24:42 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr4:87,981,592
INFO 2026-06-08 08:24:42 MarkDuplicates Tracking 381613 as yet unmatched pairs. 15078 records in RAM.
INFO 2026-06-08 08:24:44 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr4:87,982,693
INFO 2026-06-08 08:24:44 MarkDuplicates Tracking 376481 as yet unmatched pairs. 9945 records in RAM.
INFO 2026-06-08 08:24:45 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr4:101,025,922
INFO 2026-06-08 08:24:45 MarkDuplicates Tracking 370891 as yet unmatched pairs. 4328 records in RAM.
INFO 2026-06-08 08:24:47 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr4:113,214,214
INFO 2026-06-08 08:24:47 MarkDuplicates Tracking 370336 as yet unmatched pairs. 3760 records in RAM.
INFO 2026-06-08 08:24:48 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr4:123,056,411
INFO 2026-06-08 08:24:48 MarkDuplicates Tracking 369582 as yet unmatched pairs. 2996 records in RAM.
INFO 2026-06-08 08:24:49 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr4:145,143,964
INFO 2026-06-08 08:24:49 MarkDuplicates Tracking 368994 as yet unmatched pairs. 2391 records in RAM.
INFO 2026-06-08 08:24:51 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr4:155,708,245
INFO 2026-06-08 08:24:51 MarkDuplicates Tracking 368493 as yet unmatched pairs. 1838 records in RAM.
INFO 2026-06-08 08:24:53 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr4:169,704,031
INFO 2026-06-08 08:24:53 MarkDuplicates Tracking 367796 as yet unmatched pairs. 1123 records in RAM.
INFO 2026-06-08 08:24:54 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr4:186,597,689
INFO 2026-06-08 08:24:54 MarkDuplicates Tracking 367288 as yet unmatched pairs. 606 records in RAM.
INFO 2026-06-08 08:24:56 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr5:1,337,919
INFO 2026-06-08 08:24:56 MarkDuplicates Tracking 366756 as yet unmatched pairs. 21724 records in RAM.
INFO 2026-06-08 08:24:58 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr5:14,359,456
INFO 2026-06-08 08:24:58 MarkDuplicates Tracking 366331 as yet unmatched pairs. 21293 records in RAM.
INFO 2026-06-08 08:24:59 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr5:17,275,278
INFO 2026-06-08 08:24:59 MarkDuplicates Tracking 364928 as yet unmatched pairs. 19882 records in RAM.
INFO 2026-06-08 08:25:01 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr5:38,933,039
INFO 2026-06-08 08:25:01 MarkDuplicates Tracking 364373 as yet unmatched pairs. 19323 records in RAM.
INFO 2026-06-08 08:25:03 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 2s. Last read position: chr5:50,794,219
INFO 2026-06-08 08:25:03 MarkDuplicates Tracking 363776 as yet unmatched pairs. 18718 records in RAM.
INFO 2026-06-08 08:25:04 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr5:57,214,074
INFO 2026-06-08 08:25:04 MarkDuplicates Tracking 363200 as yet unmatched pairs. 18140 records in RAM.
INFO 2026-06-08 08:25:06 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr5:69,432,984
INFO 2026-06-08 08:25:06 MarkDuplicates Tracking 362375 as yet unmatched pairs. 17302 records in RAM.
INFO 2026-06-08 08:25:08 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr5:73,503,066
INFO 2026-06-08 08:25:08 MarkDuplicates Tracking 362321 as yet unmatched pairs. 17236 records in RAM.
INFO 2026-06-08 08:25:09 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr5:79,170,243
INFO 2026-06-08 08:25:09 MarkDuplicates Tracking 361233 as yet unmatched pairs. 16137 records in RAM.
INFO 2026-06-08 08:25:11 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr5:84,064,789
INFO 2026-06-08 08:25:11 MarkDuplicates Tracking 361137 as yet unmatched pairs. 16040 records in RAM.
INFO 2026-06-08 08:25:12 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr5:96,818,856
INFO 2026-06-08 08:25:12 MarkDuplicates Tracking 360056 as yet unmatched pairs. 14951 records in RAM.
INFO 2026-06-08 08:25:14 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr5:115,962,842
INFO 2026-06-08 08:25:14 MarkDuplicates Tracking 359506 as yet unmatched pairs. 14397 records in RAM.
INFO 2026-06-08 08:25:15 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr5:132,257,799
INFO 2026-06-08 08:25:15 MarkDuplicates Tracking 358825 as yet unmatched pairs. 13706 records in RAM.
INFO 2026-06-08 08:25:17 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr5:135,353,009
INFO 2026-06-08 08:25:17 MarkDuplicates Tracking 358285 as yet unmatched pairs. 13147 records in RAM.
INFO 2026-06-08 08:25:18 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr5:138,934,044
INFO 2026-06-08 08:25:18 MarkDuplicates Tracking 357437 as yet unmatched pairs. 12292 records in RAM.
INFO 2026-06-08 08:25:20 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr5:140,704,426
INFO 2026-06-08 08:25:20 MarkDuplicates Tracking 356780 as yet unmatched pairs. 11523 records in RAM.
INFO 2026-06-08 08:25:21 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr5:141,648,049
INFO 2026-06-08 08:25:21 MarkDuplicates Tracking 356049 as yet unmatched pairs. 10787 records in RAM.
INFO 2026-06-08 08:25:23 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr5:150,040,815
INFO 2026-06-08 08:25:23 MarkDuplicates Tracking 355423 as yet unmatched pairs. 10156 records in RAM.
INFO 2026-06-08 08:25:24 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,101
INFO 2026-06-08 08:25:24 MarkDuplicates Tracking 358252 as yet unmatched pairs. 12978 records in RAM.
INFO 2026-06-08 08:25:26 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,608
INFO 2026-06-08 08:25:26 MarkDuplicates Tracking 371437 as yet unmatched pairs. 26163 records in RAM.
INFO 2026-06-08 08:25:27 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,106
INFO 2026-06-08 08:25:27 MarkDuplicates Tracking 370139 as yet unmatched pairs. 24865 records in RAM.
INFO 2026-06-08 08:25:29 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,922
INFO 2026-06-08 08:25:29 MarkDuplicates Tracking 362557 as yet unmatched pairs. 17277 records in RAM.
INFO 2026-06-08 08:25:31 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr5:150,649,249
INFO 2026-06-08 08:25:31 MarkDuplicates Tracking 352450 as yet unmatched pairs. 7160 records in RAM.
INFO 2026-06-08 08:25:32 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:151,746,378
INFO 2026-06-08 08:25:32 MarkDuplicates Tracking 351654 as yet unmatched pairs. 6358 records in RAM.
INFO 2026-06-08 08:25:34 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:159,484,458
INFO 2026-06-08 08:25:34 MarkDuplicates Tracking 350286 as yet unmatched pairs. 4987 records in RAM.
INFO 2026-06-08 08:25:35 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr5:171,387,963
INFO 2026-06-08 08:25:35 MarkDuplicates Tracking 361171 as yet unmatched pairs. 15867 records in RAM.
INFO 2026-06-08 08:25:37 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:171,876,352
INFO 2026-06-08 08:25:37 MarkDuplicates Tracking 349150 as yet unmatched pairs. 3845 records in RAM.
INFO 2026-06-08 08:25:39 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 2s. Last read position: chr5:176,943,131
INFO 2026-06-08 08:25:39 MarkDuplicates Tracking 348312 as yet unmatched pairs. 2998 records in RAM.
INFO 2026-06-08 08:25:41 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:178,213,067
INFO 2026-06-08 08:25:41 MarkDuplicates Tracking 347590 as yet unmatched pairs. 2274 records in RAM.
INFO 2026-06-08 08:25:43 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:179,821,077
INFO 2026-06-08 08:25:43 MarkDuplicates Tracking 352077 as yet unmatched pairs. 6760 records in RAM.
INFO 2026-06-08 08:25:45 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 2s. Last read position: chr5:180,608,995
INFO 2026-06-08 08:25:45 MarkDuplicates Tracking 345795 as yet unmatched pairs. 477 records in RAM.
INFO 2026-06-08 08:25:47 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr6:4,031,822
INFO 2026-06-08 08:25:47 MarkDuplicates Tracking 345047 as yet unmatched pairs. 23421 records in RAM.
INFO 2026-06-08 08:25:48 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr6:10,586,385
INFO 2026-06-08 08:25:48 MarkDuplicates Tracking 344440 as yet unmatched pairs. 22799 records in RAM.
INFO 2026-06-08 08:25:50 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr6:20,585,528
INFO 2026-06-08 08:25:50 MarkDuplicates Tracking 343718 as yet unmatched pairs. 22056 records in RAM.
INFO 2026-06-08 08:25:51 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr6:26,199,673
INFO 2026-06-08 08:25:51 MarkDuplicates Tracking 343108 as yet unmatched pairs. 21440 records in RAM.
INFO 2026-06-08 08:25:53 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr6:28,276,637
INFO 2026-06-08 08:25:53 MarkDuplicates Tracking 342381 as yet unmatched pairs. 20709 records in RAM.
INFO 2026-06-08 08:25:54 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr6:30,345,187
INFO 2026-06-08 08:25:54 MarkDuplicates Tracking 342013 as yet unmatched pairs. 20338 records in RAM.
INFO 2026-06-08 08:25:56 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr6:30,888,774
INFO 2026-06-08 08:25:56 MarkDuplicates Tracking 341294 as yet unmatched pairs. 19614 records in RAM.
INFO 2026-06-08 08:25:57 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr6:31,356,842
INFO 2026-06-08 08:25:57 MarkDuplicates Tracking 340468 as yet unmatched pairs. 18786 records in RAM.
INFO 2026-06-08 08:25:59 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr6:31,659,795
INFO 2026-06-08 08:25:59 MarkDuplicates Tracking 339581 as yet unmatched pairs. 17899 records in RAM.
INFO 2026-06-08 08:26:00 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,573
INFO 2026-06-08 08:26:00 MarkDuplicates Tracking 339203 as yet unmatched pairs. 17520 records in RAM.
INFO 2026-06-08 08:26:02 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr6:32,034,967
INFO 2026-06-08 08:26:02 MarkDuplicates Tracking 338441 as yet unmatched pairs. 16758 records in RAM.
INFO 2026-06-08 08:26:03 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr6:32,581,656
INFO 2026-06-08 08:26:03 MarkDuplicates Tracking 338224 as yet unmatched pairs. 16538 records in RAM.
INFO 2026-06-08 08:26:06 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 2s. Last read position: chr6:33,069,245
INFO 2026-06-08 08:26:06 MarkDuplicates Tracking 337360 as yet unmatched pairs. 15667 records in RAM.
INFO 2026-06-08 08:26:08 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr6:33,319,029
INFO 2026-06-08 08:26:08 MarkDuplicates Tracking 336497 as yet unmatched pairs. 14799 records in RAM.
INFO 2026-06-08 08:26:09 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr6:34,654,769
INFO 2026-06-08 08:26:09 MarkDuplicates Tracking 335727 as yet unmatched pairs. 14027 records in RAM.
INFO 2026-06-08 08:26:11 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr6:37,171,446
INFO 2026-06-08 08:26:11 MarkDuplicates Tracking 334587 as yet unmatched pairs. 12884 records in RAM.
INFO 2026-06-08 08:26:12 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr6:43,018,951
INFO 2026-06-08 08:26:12 MarkDuplicates Tracking 333928 as yet unmatched pairs. 12213 records in RAM.
INFO 2026-06-08 08:26:14 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:44,249,487
INFO 2026-06-08 08:26:14 MarkDuplicates Tracking 333134 as yet unmatched pairs. 11414 records in RAM.
INFO 2026-06-08 08:26:16 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:52,995,704
INFO 2026-06-08 08:26:16 MarkDuplicates Tracking 339719 as yet unmatched pairs. 17995 records in RAM.
INFO 2026-06-08 08:26:17 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:63,579,287
INFO 2026-06-08 08:26:17 MarkDuplicates Tracking 332494 as yet unmatched pairs. 10758 records in RAM.
INFO 2026-06-08 08:26:19 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr6:78,940,864
INFO 2026-06-08 08:26:19 MarkDuplicates Tracking 331150 as yet unmatched pairs. 9402 records in RAM.
INFO 2026-06-08 08:26:20 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:89,084,070
INFO 2026-06-08 08:26:20 MarkDuplicates Tracking 331160 as yet unmatched pairs. 9396 records in RAM.
INFO 2026-06-08 08:26:22 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:108,561,091
INFO 2026-06-08 08:26:22 MarkDuplicates Tracking 329858 as yet unmatched pairs. 8086 records in RAM.
INFO 2026-06-08 08:26:23 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:114,560,488
INFO 2026-06-08 08:26:23 MarkDuplicates Tracking 328954 as yet unmatched pairs. 7165 records in RAM.
INFO 2026-06-08 08:26:25 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:127,813,262
INFO 2026-06-08 08:26:25 MarkDuplicates Tracking 328204 as yet unmatched pairs. 6409 records in RAM.
INFO 2026-06-08 08:26:26 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:136,275,984
INFO 2026-06-08 08:26:26 MarkDuplicates Tracking 327485 as yet unmatched pairs. 5679 records in RAM.
INFO 2026-06-08 08:26:28 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 2s. Last read position: chr6:142,771,814
INFO 2026-06-08 08:26:28 MarkDuplicates Tracking 326789 as yet unmatched pairs. 4980 records in RAM.
INFO 2026-06-08 08:26:30 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 2s. Last read position: chr6:150,972,011
INFO 2026-06-08 08:26:30 MarkDuplicates Tracking 326098 as yet unmatched pairs. 4282 records in RAM.
INFO 2026-06-08 08:26:32 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:152,297,337
INFO 2026-06-08 08:26:32 MarkDuplicates Tracking 325559 as yet unmatched pairs. 3743 records in RAM.
INFO 2026-06-08 08:26:34 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:158,503,126
INFO 2026-06-08 08:26:34 MarkDuplicates Tracking 324617 as yet unmatched pairs. 2794 records in RAM.
INFO 2026-06-08 08:26:35 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr6:159,684,908
INFO 2026-06-08 08:26:35 MarkDuplicates Tracking 326209 as yet unmatched pairs. 4378 records in RAM.
INFO 2026-06-08 08:26:37 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:163,455,344
INFO 2026-06-08 08:26:37 MarkDuplicates Tracking 323545 as yet unmatched pairs. 1709 records in RAM.
INFO 2026-06-08 08:26:38 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:169,232,704
INFO 2026-06-08 08:26:38 MarkDuplicates Tracking 323666 as yet unmatched pairs. 1818 records in RAM.
INFO 2026-06-08 08:26:40 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr7:1,437,960
INFO 2026-06-08 08:26:40 MarkDuplicates Tracking 321654 as yet unmatched pairs. 20791 records in RAM.
INFO 2026-06-08 08:26:41 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr7:5,314,984
INFO 2026-06-08 08:26:41 MarkDuplicates Tracking 320936 as yet unmatched pairs. 20063 records in RAM.
INFO 2026-06-08 08:26:43 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,293
INFO 2026-06-08 08:26:43 MarkDuplicates Tracking 324704 as yet unmatched pairs. 23828 records in RAM.
INFO 2026-06-08 08:26:45 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,577
INFO 2026-06-08 08:26:45 MarkDuplicates Tracking 320722 as yet unmatched pairs. 19840 records in RAM.
INFO 2026-06-08 08:26:46 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr7:17,335,673
INFO 2026-06-08 08:26:46 MarkDuplicates Tracking 318406 as yet unmatched pairs. 17511 records in RAM.
INFO 2026-06-08 08:26:47 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr7:27,130,135
INFO 2026-06-08 08:26:47 MarkDuplicates Tracking 317744 as yet unmatched pairs. 16847 records in RAM.
INFO 2026-06-08 08:26:50 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 2s. Last read position: chr7:37,444,949
INFO 2026-06-08 08:26:50 MarkDuplicates Tracking 317035 as yet unmatched pairs. 16123 records in RAM.
INFO 2026-06-08 08:26:51 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr7:44,116,816
INFO 2026-06-08 08:26:51 MarkDuplicates Tracking 316500 as yet unmatched pairs. 15575 records in RAM.
INFO 2026-06-08 08:26:53 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr7:48,093,939
INFO 2026-06-08 08:26:53 MarkDuplicates Tracking 315584 as yet unmatched pairs. 14650 records in RAM.
INFO 2026-06-08 08:26:54 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr7:55,191,770
INFO 2026-06-08 08:26:54 MarkDuplicates Tracking 315951 as yet unmatched pairs. 15016 records in RAM.
INFO 2026-06-08 08:26:56 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr7:67,014,971
INFO 2026-06-08 08:26:56 MarkDuplicates Tracking 314100 as yet unmatched pairs. 13157 records in RAM.
INFO 2026-06-08 08:26:58 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr7:74,056,321
INFO 2026-06-08 08:26:58 MarkDuplicates Tracking 313905 as yet unmatched pairs. 12951 records in RAM.
INFO 2026-06-08 08:26:59 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr7:75,422,919
INFO 2026-06-08 08:26:59 MarkDuplicates Tracking 313181 as yet unmatched pairs. 12225 records in RAM.
INFO 2026-06-08 08:27:00 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr7:76,441,929
INFO 2026-06-08 08:27:00 MarkDuplicates Tracking 312237 as yet unmatched pairs. 11277 records in RAM.
INFO 2026-06-08 08:27:02 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr7:90,412,876
INFO 2026-06-08 08:27:02 MarkDuplicates Tracking 311810 as yet unmatched pairs. 10845 records in RAM.
INFO 2026-06-08 08:27:03 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr7:93,890,271
INFO 2026-06-08 08:27:03 MarkDuplicates Tracking 319001 as yet unmatched pairs. 18026 records in RAM.
INFO 2026-06-08 08:27:05 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr7:96,694,849
INFO 2026-06-08 08:27:05 MarkDuplicates Tracking 310628 as yet unmatched pairs. 9642 records in RAM.
INFO 2026-06-08 08:27:06 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr7:99,919,252
INFO 2026-06-08 08:27:06 MarkDuplicates Tracking 309612 as yet unmatched pairs. 8613 records in RAM.
INFO 2026-06-08 08:27:08 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:100,678,440
INFO 2026-06-08 08:27:08 MarkDuplicates Tracking 308899 as yet unmatched pairs. 7891 records in RAM.
INFO 2026-06-08 08:27:10 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:102,197,042
INFO 2026-06-08 08:27:10 MarkDuplicates Tracking 308041 as yet unmatched pairs. 7032 records in RAM.
INFO 2026-06-08 08:27:11 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:105,471,541
INFO 2026-06-08 08:27:11 MarkDuplicates Tracking 307444 as yet unmatched pairs. 6429 records in RAM.
INFO 2026-06-08 08:27:12 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:112,456,913
INFO 2026-06-08 08:27:12 MarkDuplicates Tracking 306919 as yet unmatched pairs. 5900 records in RAM.
INFO 2026-06-08 08:27:14 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr7:117,540,184
INFO 2026-06-08 08:27:14 MarkDuplicates Tracking 306800 as yet unmatched pairs. 5765 records in RAM.
INFO 2026-06-08 08:27:15 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr7:128,081,360
INFO 2026-06-08 08:27:15 MarkDuplicates Tracking 306293 as yet unmatched pairs. 5257 records in RAM.
INFO 2026-06-08 08:27:17 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:133,035,067
INFO 2026-06-08 08:27:17 MarkDuplicates Tracking 305042 as yet unmatched pairs. 3996 records in RAM.
INFO 2026-06-08 08:28:26 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 69s. Last read position: chr7:139,079,791
INFO 2026-06-08 08:28:26 MarkDuplicates Tracking 304483 as yet unmatched pairs. 3429 records in RAM.
INFO 2026-06-08 08:28:28 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr7:142,796,880
INFO 2026-06-08 08:28:28 MarkDuplicates Tracking 303848 as yet unmatched pairs. 2794 records in RAM.
INFO 2026-06-08 08:28:29 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 1s. Last read position: chr7:148,814,937
INFO 2026-06-08 08:28:29 MarkDuplicates Tracking 303052 as yet unmatched pairs. 1991 records in RAM.
INFO 2026-06-08 08:28:31 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 1s. Last read position: chr7:151,064,713
INFO 2026-06-08 08:28:31 MarkDuplicates Tracking 302203 as yet unmatched pairs. 1141 records in RAM.
INFO 2026-06-08 08:28:33 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 2s. Last read position: chr7:156,688,080
INFO 2026-06-08 08:28:33 MarkDuplicates Tracking 301529 as yet unmatched pairs. 459 records in RAM.
INFO 2026-06-08 08:28:35 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr8:11,802,841
INFO 2026-06-08 08:28:35 MarkDuplicates Tracking 300709 as yet unmatched pairs. 15028 records in RAM.
INFO 2026-06-08 08:28:37 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr8:13,099,647
INFO 2026-06-08 08:28:37 MarkDuplicates Tracking 299960 as yet unmatched pairs. 14278 records in RAM.
INFO 2026-06-08 08:28:39 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 1s. Last read position: chr8:22,248,501
INFO 2026-06-08 08:28:39 MarkDuplicates Tracking 299226 as yet unmatched pairs. 13524 records in RAM.
INFO 2026-06-08 08:28:41 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 1s. Last read position: chr8:23,246,884
INFO 2026-06-08 08:28:41 MarkDuplicates Tracking 298463 as yet unmatched pairs. 12761 records in RAM.
INFO 2026-06-08 08:28:43 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr8:28,348,618
INFO 2026-06-08 08:28:43 MarkDuplicates Tracking 297730 as yet unmatched pairs. 12021 records in RAM.
INFO 2026-06-08 08:28:44 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr8:38,114,940
INFO 2026-06-08 08:28:44 MarkDuplicates Tracking 296999 as yet unmatched pairs. 11284 records in RAM.
INFO 2026-06-08 08:28:46 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr8:38,429,856
INFO 2026-06-08 08:28:46 MarkDuplicates Tracking 298180 as yet unmatched pairs. 12461 records in RAM.
INFO 2026-06-08 08:28:48 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 2s. Last read position: chr8:41,696,515
INFO 2026-06-08 08:28:48 MarkDuplicates Tracking 295569 as yet unmatched pairs. 9848 records in RAM.
INFO 2026-06-08 08:28:50 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr8:47,974,775
INFO 2026-06-08 08:28:50 MarkDuplicates Tracking 294833 as yet unmatched pairs. 9107 records in RAM.
INFO 2026-06-08 08:28:52 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr8:61,684,561
INFO 2026-06-08 08:28:52 MarkDuplicates Tracking 294271 as yet unmatched pairs. 8544 records in RAM.
INFO 2026-06-08 08:28:54 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 2s. Last read position: chr8:71,842,692
INFO 2026-06-08 08:28:54 MarkDuplicates Tracking 293914 as yet unmatched pairs. 8180 records in RAM.
INFO 2026-06-08 08:28:56 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr8:89,636,103
INFO 2026-06-08 08:28:56 MarkDuplicates Tracking 292929 as yet unmatched pairs. 7188 records in RAM.
INFO 2026-06-08 08:28:58 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr8:98,041,785
INFO 2026-06-08 08:28:58 MarkDuplicates Tracking 294680 as yet unmatched pairs. 8938 records in RAM.
INFO 2026-06-08 08:28:59 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr8:102,314,764
INFO 2026-06-08 08:28:59 MarkDuplicates Tracking 291664 as yet unmatched pairs. 5917 records in RAM.
INFO 2026-06-08 08:29:01 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr8:119,208,481
INFO 2026-06-08 08:29:01 MarkDuplicates Tracking 292697 as yet unmatched pairs. 6942 records in RAM.
INFO 2026-06-08 08:29:03 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,352
INFO 2026-06-08 08:29:03 MarkDuplicates Tracking 290489 as yet unmatched pairs. 4726 records in RAM.
INFO 2026-06-08 08:29:04 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr8:133,284,910
INFO 2026-06-08 08:29:04 MarkDuplicates Tracking 289549 as yet unmatched pairs. 3772 records in RAM.
INFO 2026-06-08 08:29:06 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr8:143,586,752
INFO 2026-06-08 08:29:06 MarkDuplicates Tracking 289007 as yet unmatched pairs. 3214 records in RAM.
INFO 2026-06-08 08:29:08 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr8:143,920,777
INFO 2026-06-08 08:29:08 MarkDuplicates Tracking 288079 as yet unmatched pairs. 2281 records in RAM.
INFO 2026-06-08 08:29:10 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr8:144,098,954
INFO 2026-06-08 08:29:10 MarkDuplicates Tracking 287165 as yet unmatched pairs. 1362 records in RAM.
INFO 2026-06-08 08:29:12 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr8:144,792,010
INFO 2026-06-08 08:29:12 MarkDuplicates Tracking 286076 as yet unmatched pairs. 261 records in RAM.
INFO 2026-06-08 08:29:14 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 2s. Last read position: chr9:6,256,028
INFO 2026-06-08 08:29:14 MarkDuplicates Tracking 285364 as yet unmatched pairs. 19436 records in RAM.
INFO 2026-06-08 08:29:16 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr9:13,188,830
INFO 2026-06-08 08:29:16 MarkDuplicates Tracking 284624 as yet unmatched pairs. 18680 records in RAM.
INFO 2026-06-08 08:29:18 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr9:19,346,077
INFO 2026-06-08 08:29:18 MarkDuplicates Tracking 284004 as yet unmatched pairs. 18054 records in RAM.
INFO 2026-06-08 08:29:20 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr9:33,472,383
INFO 2026-06-08 08:29:20 MarkDuplicates Tracking 283325 as yet unmatched pairs. 17366 records in RAM.
INFO 2026-06-08 08:29:21 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr9:35,547,744
INFO 2026-06-08 08:29:21 MarkDuplicates Tracking 282636 as yet unmatched pairs. 16676 records in RAM.
INFO 2026-06-08 08:29:23 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr9:35,741,767
INFO 2026-06-08 08:29:23 MarkDuplicates Tracking 281985 as yet unmatched pairs. 16023 records in RAM.
INFO 2026-06-08 08:29:24 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr9:41,185,997
INFO 2026-06-08 08:29:24 MarkDuplicates Tracking 281363 as yet unmatched pairs. 15349 records in RAM.
INFO 2026-06-08 08:29:26 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr9:69,247,999
INFO 2026-06-08 08:29:26 MarkDuplicates Tracking 280987 as yet unmatched pairs. 14973 records in RAM.
INFO 2026-06-08 08:29:27 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr9:72,940,199
INFO 2026-06-08 08:29:27 MarkDuplicates Tracking 282353 as yet unmatched pairs. 16323 records in RAM.
INFO 2026-06-08 08:29:29 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr9:85,610,544
INFO 2026-06-08 08:29:29 MarkDuplicates Tracking 279640 as yet unmatched pairs. 13605 records in RAM.
INFO 2026-06-08 08:29:31 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 2s. Last read position: chr9:92,288,186
INFO 2026-06-08 08:29:31 MarkDuplicates Tracking 279040 as yet unmatched pairs. 12999 records in RAM.
INFO 2026-06-08 08:29:33 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr9:96,945,191
INFO 2026-06-08 08:29:33 MarkDuplicates Tracking 278346 as yet unmatched pairs. 12295 records in RAM.
INFO 2026-06-08 08:29:34 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr9:104,117,366
INFO 2026-06-08 08:29:34 MarkDuplicates Tracking 277650 as yet unmatched pairs. 11585 records in RAM.
INFO 2026-06-08 08:29:38 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 3s. Last read position: chr9:110,137,321
INFO 2026-06-08 08:29:38 MarkDuplicates Tracking 277260 as yet unmatched pairs. 11191 records in RAM.
INFO 2026-06-08 08:29:40 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 2s. Last read position: chr9:113,392,122
INFO 2026-06-08 08:29:40 MarkDuplicates Tracking 276261 as yet unmatched pairs. 10189 records in RAM.
INFO 2026-06-08 08:29:42 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr9:115,086,691
INFO 2026-06-08 08:29:42 MarkDuplicates Tracking 275643 as yet unmatched pairs. 9568 records in RAM.
INFO 2026-06-08 08:29:43 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr9:122,919,330
INFO 2026-06-08 08:29:43 MarkDuplicates Tracking 274699 as yet unmatched pairs. 8617 records in RAM.
INFO 2026-06-08 08:29:45 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr9:127,210,614
INFO 2026-06-08 08:29:45 MarkDuplicates Tracking 273987 as yet unmatched pairs. 7898 records in RAM.
INFO 2026-06-08 08:29:46 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr9:128,124,533
INFO 2026-06-08 08:29:46 MarkDuplicates Tracking 273167 as yet unmatched pairs. 7058 records in RAM.
INFO 2026-06-08 08:29:48 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr9:128,645,074
INFO 2026-06-08 08:29:48 MarkDuplicates Tracking 272262 as yet unmatched pairs. 6152 records in RAM.
INFO 2026-06-08 08:29:50 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr9:130,027,852
INFO 2026-06-08 08:29:50 MarkDuplicates Tracking 271532 as yet unmatched pairs. 5414 records in RAM.
INFO 2026-06-08 08:29:51 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr9:131,260,865
INFO 2026-06-08 08:29:51 MarkDuplicates Tracking 270756 as yet unmatched pairs. 4629 records in RAM.
INFO 2026-06-08 08:29:53 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr9:133,042,248
INFO 2026-06-08 08:29:53 MarkDuplicates Tracking 270054 as yet unmatched pairs. 3926 records in RAM.
INFO 2026-06-08 08:29:54 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr9:134,731,623
INFO 2026-06-08 08:29:54 MarkDuplicates Tracking 269337 as yet unmatched pairs. 3199 records in RAM.
INFO 2026-06-08 08:29:57 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 2s. Last read position: chr9:136,466,284
INFO 2026-06-08 08:29:57 MarkDuplicates Tracking 268295 as yet unmatched pairs. 2151 records in RAM.
INFO 2026-06-08 08:29:59 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr9:136,943,927
INFO 2026-06-08 08:29:59 MarkDuplicates Tracking 267394 as yet unmatched pairs. 1249 records in RAM.
INFO 2026-06-08 08:30:01 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr9:137,582,587
INFO 2026-06-08 08:30:01 MarkDuplicates Tracking 266427 as yet unmatched pairs. 281 records in RAM.
INFO 2026-06-08 08:30:02 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr10:5,903,020
INFO 2026-06-08 08:30:02 MarkDuplicates Tracking 265622 as yet unmatched pairs. 14819 records in RAM.
INFO 2026-06-08 08:30:04 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr10:13,656,730
INFO 2026-06-08 08:30:04 MarkDuplicates Tracking 265061 as yet unmatched pairs. 14244 records in RAM.
INFO 2026-06-08 08:30:06 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr10:20,147,803
INFO 2026-06-08 08:30:06 MarkDuplicates Tracking 264114 as yet unmatched pairs. 13278 records in RAM.
INFO 2026-06-08 08:30:07 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr10:29,571,682
INFO 2026-06-08 08:30:07 MarkDuplicates Tracking 263365 as yet unmatched pairs. 12523 records in RAM.
INFO 2026-06-08 08:30:09 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr10:32,908,380
INFO 2026-06-08 08:30:09 MarkDuplicates Tracking 264199 as yet unmatched pairs. 13352 records in RAM.
INFO 2026-06-08 08:30:10 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr10:43,183,254
INFO 2026-06-08 08:30:10 MarkDuplicates Tracking 262231 as yet unmatched pairs. 11379 records in RAM.
INFO 2026-06-08 08:30:12 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr10:46,550,692
INFO 2026-06-08 08:30:12 MarkDuplicates Tracking 261511 as yet unmatched pairs. 10654 records in RAM.
INFO 2026-06-08 08:30:14 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr10:58,789,853
INFO 2026-06-08 08:30:14 MarkDuplicates Tracking 261621 as yet unmatched pairs. 10761 records in RAM.
INFO 2026-06-08 08:30:15 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr10:68,034,050
INFO 2026-06-08 08:30:15 MarkDuplicates Tracking 260278 as yet unmatched pairs. 9416 records in RAM.
INFO 2026-06-08 08:30:17 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 2s. Last read position: chr10:71,750,679
INFO 2026-06-08 08:30:17 MarkDuplicates Tracking 259483 as yet unmatched pairs. 8615 records in RAM.
INFO 2026-06-08 08:30:20 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 2s. Last read position: chr10:73,773,785
INFO 2026-06-08 08:30:20 MarkDuplicates Tracking 258802 as yet unmatched pairs. 7927 records in RAM.
INFO 2026-06-08 08:30:21 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr10:77,578,464
INFO 2026-06-08 08:30:21 MarkDuplicates Tracking 258250 as yet unmatched pairs. 7355 records in RAM.
INFO 2026-06-08 08:30:23 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr10:86,500,440
INFO 2026-06-08 08:30:23 MarkDuplicates Tracking 257682 as yet unmatched pairs. 6768 records in RAM.
INFO 2026-06-08 08:30:24 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr10:90,920,236
INFO 2026-06-08 08:30:24 MarkDuplicates Tracking 256855 as yet unmatched pairs. 5937 records in RAM.
INFO 2026-06-08 08:30:26 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr10:95,610,231
INFO 2026-06-08 08:30:26 MarkDuplicates Tracking 256104 as yet unmatched pairs. 5181 records in RAM.
INFO 2026-06-08 08:30:28 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr10:98,208,705
INFO 2026-06-08 08:30:28 MarkDuplicates Tracking 255415 as yet unmatched pairs. 4488 records in RAM.
INFO 2026-06-08 08:30:30 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr10:101,790,896
INFO 2026-06-08 08:30:30 MarkDuplicates Tracking 254668 as yet unmatched pairs. 3726 records in RAM.
INFO 2026-06-08 08:30:31 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr10:102,878,318
INFO 2026-06-08 08:30:31 MarkDuplicates Tracking 253695 as yet unmatched pairs. 2751 records in RAM.
INFO 2026-06-08 08:30:33 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr10:113,841,475
INFO 2026-06-08 08:30:33 MarkDuplicates Tracking 252949 as yet unmatched pairs. 1991 records in RAM.
INFO 2026-06-08 08:30:35 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr10:119,914,729
INFO 2026-06-08 08:30:35 MarkDuplicates Tracking 252312 as yet unmatched pairs. 1341 records in RAM.
INFO 2026-06-08 08:30:37 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr10:128,070,333
INFO 2026-06-08 08:30:37 MarkDuplicates Tracking 251654 as yet unmatched pairs. 681 records in RAM.
INFO 2026-06-08 08:30:39 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr11:309,016
INFO 2026-06-08 08:30:39 MarkDuplicates Tracking 253180 as yet unmatched pairs. 30982 records in RAM.
INFO 2026-06-08 08:30:40 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr11:489,957
INFO 2026-06-08 08:30:40 MarkDuplicates Tracking 250215 as yet unmatched pairs. 28014 records in RAM.
INFO 2026-06-08 08:30:42 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,892
INFO 2026-06-08 08:30:42 MarkDuplicates Tracking 249158 as yet unmatched pairs. 26949 records in RAM.
INFO 2026-06-08 08:30:43 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr11:2,402,939
INFO 2026-06-08 08:30:43 MarkDuplicates Tracking 248456 as yet unmatched pairs. 26236 records in RAM.
INFO 2026-06-08 08:30:45 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr11:6,609,974
INFO 2026-06-08 08:30:45 MarkDuplicates Tracking 247757 as yet unmatched pairs. 25535 records in RAM.
INFO 2026-06-08 08:30:46 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr11:9,299,584
INFO 2026-06-08 08:30:46 MarkDuplicates Tracking 246958 as yet unmatched pairs. 24732 records in RAM.
INFO 2026-06-08 08:30:48 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr11:12,508,597
INFO 2026-06-08 08:30:48 MarkDuplicates Tracking 246499 as yet unmatched pairs. 24268 records in RAM.
INFO 2026-06-08 08:30:49 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr11:18,615,201
INFO 2026-06-08 08:30:49 MarkDuplicates Tracking 245601 as yet unmatched pairs. 23368 records in RAM.
INFO 2026-06-08 08:30:52 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 2s. Last read position: chr11:33,750,570
INFO 2026-06-08 08:30:52 MarkDuplicates Tracking 244987 as yet unmatched pairs. 22745 records in RAM.
INFO 2026-06-08 08:30:53 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr11:44,107,745
INFO 2026-06-08 08:30:53 MarkDuplicates Tracking 244272 as yet unmatched pairs. 22025 records in RAM.
INFO 2026-06-08 08:30:55 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr11:47,260,656
INFO 2026-06-08 08:30:55 MarkDuplicates Tracking 243420 as yet unmatched pairs. 21172 records in RAM.
INFO 2026-06-08 08:30:57 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr11:57,321,840
INFO 2026-06-08 08:30:57 MarkDuplicates Tracking 242644 as yet unmatched pairs. 20392 records in RAM.
INFO 2026-06-08 08:30:59 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 2s. Last read position: chr11:59,189,267
INFO 2026-06-08 08:30:59 MarkDuplicates Tracking 241778 as yet unmatched pairs. 19522 records in RAM.
INFO 2026-06-08 08:31:01 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr11:61,421,571
INFO 2026-06-08 08:31:01 MarkDuplicates Tracking 241273 as yet unmatched pairs. 18983 records in RAM.
INFO 2026-06-08 08:31:02 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr11:62,521,945
INFO 2026-06-08 08:31:02 MarkDuplicates Tracking 240786 as yet unmatched pairs. 18495 records in RAM.
INFO 2026-06-08 08:31:04 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 2s. Last read position: chr11:62,535,045
INFO 2026-06-08 08:31:04 MarkDuplicates Tracking 240223 as yet unmatched pairs. 17928 records in RAM.
INFO 2026-06-08 08:31:06 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr11:62,807,216
INFO 2026-06-08 08:31:06 MarkDuplicates Tracking 239045 as yet unmatched pairs. 16747 records in RAM.
INFO 2026-06-08 08:31:08 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr11:64,246,480
INFO 2026-06-08 08:31:08 MarkDuplicates Tracking 238429 as yet unmatched pairs. 16129 records in RAM.
INFO 2026-06-08 08:31:09 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr11:65,021,802
INFO 2026-06-08 08:31:09 MarkDuplicates Tracking 237315 as yet unmatched pairs. 15015 records in RAM.
INFO 2026-06-08 08:31:11 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr11:65,502,674
INFO 2026-06-08 08:31:11 MarkDuplicates Tracking 236553 as yet unmatched pairs. 14248 records in RAM.
INFO 2026-06-08 08:31:12 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:65,623,591
INFO 2026-06-08 08:31:12 MarkDuplicates Tracking 235628 as yet unmatched pairs. 13316 records in RAM.
INFO 2026-06-08 08:31:14 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr11:65,860,720
INFO 2026-06-08 08:31:14 MarkDuplicates Tracking 234568 as yet unmatched pairs. 12255 records in RAM.
INFO 2026-06-08 08:31:15 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:66,510,966
INFO 2026-06-08 08:31:15 MarkDuplicates Tracking 233714 as yet unmatched pairs. 11398 records in RAM.
INFO 2026-06-08 08:31:17 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr11:67,440,065
INFO 2026-06-08 08:31:17 MarkDuplicates Tracking 232792 as yet unmatched pairs. 10474 records in RAM.
INFO 2026-06-08 08:31:19 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:68,436,929
INFO 2026-06-08 08:31:19 MarkDuplicates Tracking 231733 as yet unmatched pairs. 9411 records in RAM.
INFO 2026-06-08 08:31:20 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr11:72,014,418
INFO 2026-06-08 08:31:20 MarkDuplicates Tracking 231163 as yet unmatched pairs. 8838 records in RAM.
INFO 2026-06-08 08:31:21 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:73,976,726
INFO 2026-06-08 08:31:21 MarkDuplicates Tracking 230465 as yet unmatched pairs. 8138 records in RAM.
INFO 2026-06-08 08:31:23 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr11:76,539,627
INFO 2026-06-08 08:31:23 MarkDuplicates Tracking 229565 as yet unmatched pairs. 7237 records in RAM.
INFO 2026-06-08 08:31:25 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:85,726,472
INFO 2026-06-08 08:31:25 MarkDuplicates Tracking 228949 as yet unmatched pairs. 6620 records in RAM.
INFO 2026-06-08 08:31:26 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr11:95,089,926
INFO 2026-06-08 08:31:26 MarkDuplicates Tracking 228278 as yet unmatched pairs. 5944 records in RAM.
INFO 2026-06-08 08:31:28 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:102,792,663
INFO 2026-06-08 08:31:28 MarkDuplicates Tracking 227703 as yet unmatched pairs. 5366 records in RAM.
INFO 2026-06-08 08:31:30 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 2s. Last read position: chr11:111,908,904
INFO 2026-06-08 08:31:30 MarkDuplicates Tracking 229663 as yet unmatched pairs. 7322 records in RAM.
INFO 2026-06-08 08:31:33 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 3s. Last read position: chr11:117,203,452
INFO 2026-06-08 08:31:33 MarkDuplicates Tracking 226673 as yet unmatched pairs. 4326 records in RAM.
INFO 2026-06-08 08:31:35 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:118,557,726
INFO 2026-06-08 08:31:35 MarkDuplicates Tracking 225541 as yet unmatched pairs. 3187 records in RAM.
INFO 2026-06-08 08:31:36 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr11:119,309,728
INFO 2026-06-08 08:31:36 MarkDuplicates Tracking 225063 as yet unmatched pairs. 2706 records in RAM.
INFO 2026-06-08 08:31:38 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:123,061,117
INFO 2026-06-08 08:31:38 MarkDuplicates Tracking 224297 as yet unmatched pairs. 1936 records in RAM.
INFO 2026-06-08 08:31:39 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:129,870,102
INFO 2026-06-08 08:31:39 MarkDuplicates Tracking 223409 as yet unmatched pairs. 1044 records in RAM.
INFO 2026-06-08 08:31:41 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:130,143,379
INFO 2026-06-08 08:31:41 MarkDuplicates Tracking 222894 as yet unmatched pairs. 526 records in RAM.
INFO 2026-06-08 08:31:42 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr12:1,645,811
INFO 2026-06-08 08:31:42 MarkDuplicates Tracking 221932 as yet unmatched pairs. 23264 records in RAM.
INFO 2026-06-08 08:31:44 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr12:6,347,748
INFO 2026-06-08 08:31:44 MarkDuplicates Tracking 221179 as yet unmatched pairs. 22496 records in RAM.
INFO 2026-06-08 08:31:45 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr12:6,773,950
INFO 2026-06-08 08:31:45 MarkDuplicates Tracking 220596 as yet unmatched pairs. 21912 records in RAM.
INFO 2026-06-08 08:31:47 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr12:7,081,268
INFO 2026-06-08 08:31:47 MarkDuplicates Tracking 219940 as yet unmatched pairs. 21256 records in RAM.
INFO 2026-06-08 08:31:48 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr12:8,519,034
INFO 2026-06-08 08:31:48 MarkDuplicates Tracking 218947 as yet unmatched pairs. 20258 records in RAM.
INFO 2026-06-08 08:31:50 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr12:10,723,008
INFO 2026-06-08 08:31:50 MarkDuplicates Tracking 218544 as yet unmatched pairs. 19853 records in RAM.
INFO 2026-06-08 08:31:51 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr12:15,503,839
INFO 2026-06-08 08:31:51 MarkDuplicates Tracking 217617 as yet unmatched pairs. 18924 records in RAM.
INFO 2026-06-08 08:31:53 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr12:28,337,169
INFO 2026-06-08 08:31:53 MarkDuplicates Tracking 217007 as yet unmatched pairs. 18304 records in RAM.
INFO 2026-06-08 08:31:54 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr12:45,924,887
INFO 2026-06-08 08:31:54 MarkDuplicates Tracking 216607 as yet unmatched pairs. 17902 records in RAM.
INFO 2026-06-08 08:31:56 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr12:48,925,297
INFO 2026-06-08 08:31:56 MarkDuplicates Tracking 215902 as yet unmatched pairs. 17182 records in RAM.
INFO 2026-06-08 08:31:57 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr12:49,129,271
INFO 2026-06-08 08:31:57 MarkDuplicates Tracking 216038 as yet unmatched pairs. 17313 records in RAM.
INFO 2026-06-08 08:31:59 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr12:50,086,644
INFO 2026-06-08 08:31:59 MarkDuplicates Tracking 214536 as yet unmatched pairs. 15811 records in RAM.
INFO 2026-06-08 08:32:00 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr12:52,898,716
INFO 2026-06-08 08:32:00 MarkDuplicates Tracking 214514 as yet unmatched pairs. 15785 records in RAM.
INFO 2026-06-08 08:32:01 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr12:53,274,964
INFO 2026-06-08 08:32:01 MarkDuplicates Tracking 212897 as yet unmatched pairs. 14166 records in RAM.
INFO 2026-06-08 08:32:03 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr12:54,181,472
INFO 2026-06-08 08:32:03 MarkDuplicates Tracking 212289 as yet unmatched pairs. 13556 records in RAM.
INFO 2026-06-08 08:32:05 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr12:55,725,850
INFO 2026-06-08 08:32:05 MarkDuplicates Tracking 211963 as yet unmatched pairs. 13229 records in RAM.
INFO 2026-06-08 08:32:06 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr12:56,165,549
INFO 2026-06-08 08:32:06 MarkDuplicates Tracking 211014 as yet unmatched pairs. 12274 records in RAM.
INFO 2026-06-08 08:32:08 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr12:56,714,618
INFO 2026-06-08 08:32:08 MarkDuplicates Tracking 213789 as yet unmatched pairs. 15047 records in RAM.
INFO 2026-06-08 08:32:10 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr12:57,156,808
INFO 2026-06-08 08:32:10 MarkDuplicates Tracking 209830 as yet unmatched pairs. 11088 records in RAM.
INFO 2026-06-08 08:32:11 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr12:57,488,165
INFO 2026-06-08 08:32:11 MarkDuplicates Tracking 208985 as yet unmatched pairs. 10243 records in RAM.
INFO 2026-06-08 08:32:13 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr12:62,965,543
INFO 2026-06-08 08:32:13 MarkDuplicates Tracking 207839 as yet unmatched pairs. 9096 records in RAM.
INFO 2026-06-08 08:32:14 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr12:68,690,689
INFO 2026-06-08 08:32:14 MarkDuplicates Tracking 207295 as yet unmatched pairs. 8546 records in RAM.
INFO 2026-06-08 08:32:16 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr12:76,369,661
INFO 2026-06-08 08:32:16 MarkDuplicates Tracking 206834 as yet unmatched pairs. 8080 records in RAM.
INFO 2026-06-08 08:32:18 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr12:94,367,856
INFO 2026-06-08 08:32:18 MarkDuplicates Tracking 206037 as yet unmatched pairs. 7277 records in RAM.
INFO 2026-06-08 08:32:19 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr12:100,326,641
INFO 2026-06-08 08:32:19 MarkDuplicates Tracking 205526 as yet unmatched pairs. 6758 records in RAM.
INFO 2026-06-08 08:32:21 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr12:105,061,705
INFO 2026-06-08 08:32:21 MarkDuplicates Tracking 204742 as yet unmatched pairs. 5973 records in RAM.
INFO 2026-06-08 08:32:23 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr12:109,938,437
INFO 2026-06-08 08:32:23 MarkDuplicates Tracking 204039 as yet unmatched pairs. 5264 records in RAM.
INFO 2026-06-08 08:32:24 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr12:112,184,437
INFO 2026-06-08 08:32:24 MarkDuplicates Tracking 203274 as yet unmatched pairs. 4497 records in RAM.
INFO 2026-06-08 08:32:26 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr12:113,950,141
INFO 2026-06-08 08:32:26 MarkDuplicates Tracking 202591 as yet unmatched pairs. 3811 records in RAM.
INFO 2026-06-08 08:32:27 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr12:120,215,578
INFO 2026-06-08 08:32:27 MarkDuplicates Tracking 202056 as yet unmatched pairs. 3270 records in RAM.
INFO 2026-06-08 08:32:29 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr12:122,133,754
INFO 2026-06-08 08:32:29 MarkDuplicates Tracking 201270 as yet unmatched pairs. 2484 records in RAM.
INFO 2026-06-08 08:32:31 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr12:124,336,812
INFO 2026-06-08 08:32:31 MarkDuplicates Tracking 200488 as yet unmatched pairs. 1690 records in RAM.
INFO 2026-06-08 08:32:32 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr12:131,727,043
INFO 2026-06-08 08:32:32 MarkDuplicates Tracking 199721 as yet unmatched pairs. 907 records in RAM.
INFO 2026-06-08 08:32:34 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr12:133,105,609
INFO 2026-06-08 08:32:34 MarkDuplicates Tracking 198923 as yet unmatched pairs. 102 records in RAM.
INFO 2026-06-08 08:32:35 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr13:24,434,734
INFO 2026-06-08 08:32:35 MarkDuplicates Tracking 198337 as yet unmatched pairs. 6854 records in RAM.
INFO 2026-06-08 08:32:37 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr13:30,463,283
INFO 2026-06-08 08:32:37 MarkDuplicates Tracking 197806 as yet unmatched pairs. 6321 records in RAM.
INFO 2026-06-08 08:32:38 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr13:38,688,450
INFO 2026-06-08 08:32:38 MarkDuplicates Tracking 196918 as yet unmatched pairs. 5429 records in RAM.
INFO 2026-06-08 08:32:40 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr13:45,969,160
INFO 2026-06-08 08:32:40 MarkDuplicates Tracking 196351 as yet unmatched pairs. 4853 records in RAM.
INFO 2026-06-08 08:32:41 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr13:52,659,235
INFO 2026-06-08 08:32:41 MarkDuplicates Tracking 195622 as yet unmatched pairs. 4120 records in RAM.
INFO 2026-06-08 08:32:43 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr13:95,833,031
INFO 2026-06-08 08:32:43 MarkDuplicates Tracking 194974 as yet unmatched pairs. 3466 records in RAM.
INFO 2026-06-08 08:32:44 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr13:109,784,611
INFO 2026-06-08 08:32:44 MarkDuplicates Tracking 194279 as yet unmatched pairs. 2755 records in RAM.
INFO 2026-06-08 08:32:46 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 2s. Last read position: chr13:110,213,960
INFO 2026-06-08 08:32:46 MarkDuplicates Tracking 194949 as yet unmatched pairs. 3421 records in RAM.
INFO 2026-06-08 08:32:48 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr13:110,508,080
INFO 2026-06-08 08:32:48 MarkDuplicates Tracking 193479 as yet unmatched pairs. 1946 records in RAM.
INFO 2026-06-08 08:32:49 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr13:113,832,469
INFO 2026-06-08 08:32:49 MarkDuplicates Tracking 192259 as yet unmatched pairs. 721 records in RAM.
INFO 2026-06-08 08:32:51 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr14:21,230,337
INFO 2026-06-08 08:32:51 MarkDuplicates Tracking 193132 as yet unmatched pairs. 21163 records in RAM.
INFO 2026-06-08 08:32:54 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 3s. Last read position: chr14:22,875,353
INFO 2026-06-08 08:32:54 MarkDuplicates Tracking 191596 as yet unmatched pairs. 19624 records in RAM.
INFO 2026-06-08 08:32:56 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 2s. Last read position: chr14:24,143,440
INFO 2026-06-08 08:32:56 MarkDuplicates Tracking 190443 as yet unmatched pairs. 18467 records in RAM.
INFO 2026-06-08 08:32:58 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr14:30,702,294
INFO 2026-06-08 08:32:58 MarkDuplicates Tracking 188701 as yet unmatched pairs. 16720 records in RAM.
INFO 2026-06-08 08:32:59 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr14:37,266,502
INFO 2026-06-08 08:32:59 MarkDuplicates Tracking 188137 as yet unmatched pairs. 16147 records in RAM.
INFO 2026-06-08 08:33:00 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,681
INFO 2026-06-08 08:33:00 MarkDuplicates Tracking 211820 as yet unmatched pairs. 39825 records in RAM.
INFO 2026-06-08 08:33:02 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,576
INFO 2026-06-08 08:33:02 MarkDuplicates Tracking 195712 as yet unmatched pairs. 23704 records in RAM.
INFO 2026-06-08 08:33:03 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr14:49,893,696
INFO 2026-06-08 08:33:03 MarkDuplicates Tracking 187040 as yet unmatched pairs. 15022 records in RAM.
INFO 2026-06-08 08:33:05 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr14:52,784,664
INFO 2026-06-08 08:33:05 MarkDuplicates Tracking 186389 as yet unmatched pairs. 14360 records in RAM.
INFO 2026-06-08 08:33:06 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr14:60,282,724
INFO 2026-06-08 08:33:06 MarkDuplicates Tracking 185899 as yet unmatched pairs. 13863 records in RAM.
INFO 2026-06-08 08:33:07 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr14:64,122,283
INFO 2026-06-08 08:33:07 MarkDuplicates Tracking 185313 as yet unmatched pairs. 13275 records in RAM.
INFO 2026-06-08 08:33:09 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr14:67,783,369
INFO 2026-06-08 08:33:09 MarkDuplicates Tracking 184689 as yet unmatched pairs. 12650 records in RAM.
INFO 2026-06-08 08:33:11 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr14:69,885,374
INFO 2026-06-08 08:33:11 MarkDuplicates Tracking 183735 as yet unmatched pairs. 11694 records in RAM.
INFO 2026-06-08 08:33:12 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr14:74,480,269
INFO 2026-06-08 08:33:12 MarkDuplicates Tracking 184004 as yet unmatched pairs. 11959 records in RAM.
INFO 2026-06-08 08:33:14 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr14:75,134,966
INFO 2026-06-08 08:33:14 MarkDuplicates Tracking 182493 as yet unmatched pairs. 10447 records in RAM.
INFO 2026-06-08 08:33:15 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr14:88,011,618
INFO 2026-06-08 08:33:15 MarkDuplicates Tracking 181596 as yet unmatched pairs. 9538 records in RAM.
INFO 2026-06-08 08:33:17 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr14:92,712,855
INFO 2026-06-08 08:33:17 MarkDuplicates Tracking 181381 as yet unmatched pairs. 9322 records in RAM.
INFO 2026-06-08 08:33:18 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr14:99,412,993
INFO 2026-06-08 08:33:18 MarkDuplicates Tracking 180107 as yet unmatched pairs. 8041 records in RAM.
INFO 2026-06-08 08:33:21 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 2s. Last read position: chr14:102,019,963
INFO 2026-06-08 08:33:21 MarkDuplicates Tracking 179562 as yet unmatched pairs. 7445 records in RAM.
INFO 2026-06-08 08:33:23 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr14:103,336,836
INFO 2026-06-08 08:33:23 MarkDuplicates Tracking 178632 as yet unmatched pairs. 6508 records in RAM.
INFO 2026-06-08 08:33:25 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 2s. Last read position: chr14:104,941,666
INFO 2026-06-08 08:33:25 MarkDuplicates Tracking 179176 as yet unmatched pairs. 7051 records in RAM.
INFO 2026-06-08 08:33:27 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr14:104,947,162
INFO 2026-06-08 08:33:27 MarkDuplicates Tracking 178884 as yet unmatched pairs. 6754 records in RAM.
INFO 2026-06-08 08:33:28 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr14:105,286,328
INFO 2026-06-08 08:33:28 MarkDuplicates Tracking 176365 as yet unmatched pairs. 4232 records in RAM.
INFO 2026-06-08 08:33:29 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr14:105,625,043
INFO 2026-06-08 08:33:29 MarkDuplicates Tracking 177821 as yet unmatched pairs. 5688 records in RAM.
INFO 2026-06-08 08:33:31 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,241
INFO 2026-06-08 08:33:31 MarkDuplicates Tracking 176703 as yet unmatched pairs. 4564 records in RAM.
INFO 2026-06-08 08:33:32 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr14:105,708,394
INFO 2026-06-08 08:33:32 MarkDuplicates Tracking 177544 as yet unmatched pairs. 5403 records in RAM.
INFO 2026-06-08 08:33:34 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,618
INFO 2026-06-08 08:33:34 MarkDuplicates Tracking 185701 as yet unmatched pairs. 13560 records in RAM.
INFO 2026-06-08 08:33:36 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,069
INFO 2026-06-08 08:33:36 MarkDuplicates Tracking 178872 as yet unmatched pairs. 6731 records in RAM.
INFO 2026-06-08 08:33:37 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,880
INFO 2026-06-08 08:33:37 MarkDuplicates Tracking 194727 as yet unmatched pairs. 22584 records in RAM.
INFO 2026-06-08 08:33:38 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr14:105,771,185
INFO 2026-06-08 08:33:38 MarkDuplicates Tracking 173477 as yet unmatched pairs. 1332 records in RAM.
INFO 2026-06-08 08:33:40 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr14:106,803,131
INFO 2026-06-08 08:33:40 MarkDuplicates Tracking 172146 as yet unmatched pairs. 0 records in RAM.
INFO 2026-06-08 08:33:42 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr15:30,403,735
INFO 2026-06-08 08:33:42 MarkDuplicates Tracking 171568 as yet unmatched pairs. 12061 records in RAM.
INFO 2026-06-08 08:33:43 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr15:36,891,704
INFO 2026-06-08 08:33:43 MarkDuplicates Tracking 170977 as yet unmatched pairs. 11460 records in RAM.
INFO 2026-06-08 08:33:45 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr15:41,069,605
INFO 2026-06-08 08:33:45 MarkDuplicates Tracking 170198 as yet unmatched pairs. 10681 records in RAM.
INFO 2026-06-08 08:33:46 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr15:43,474,695
INFO 2026-06-08 08:33:46 MarkDuplicates Tracking 169627 as yet unmatched pairs. 10100 records in RAM.
INFO 2026-06-08 08:33:48 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr15:44,715,613
INFO 2026-06-08 08:33:48 MarkDuplicates Tracking 169837 as yet unmatched pairs. 10309 records in RAM.
INFO 2026-06-08 08:33:49 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr15:50,609,808
INFO 2026-06-08 08:33:49 MarkDuplicates Tracking 168172 as yet unmatched pairs. 8640 records in RAM.
INFO 2026-06-08 08:33:51 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr15:57,545,631
INFO 2026-06-08 08:33:51 MarkDuplicates Tracking 167565 as yet unmatched pairs. 8028 records in RAM.
INFO 2026-06-08 08:33:53 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 2s. Last read position: chr15:61,945,781
INFO 2026-06-08 08:33:53 MarkDuplicates Tracking 166958 as yet unmatched pairs. 7420 records in RAM.
INFO 2026-06-08 08:33:56 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 2s. Last read position: chr15:64,468,505
INFO 2026-06-08 08:33:56 MarkDuplicates Tracking 166077 as yet unmatched pairs. 6535 records in RAM.
INFO 2026-06-08 08:33:58 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 2s. Last read position: chr15:67,166,803
INFO 2026-06-08 08:33:58 MarkDuplicates Tracking 165489 as yet unmatched pairs. 5937 records in RAM.
INFO 2026-06-08 08:33:59 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr15:71,994,540
INFO 2026-06-08 08:33:59 MarkDuplicates Tracking 164701 as yet unmatched pairs. 5147 records in RAM.
INFO 2026-06-08 08:34:01 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr15:74,032,580
INFO 2026-06-08 08:34:01 MarkDuplicates Tracking 164563 as yet unmatched pairs. 5000 records in RAM.
INFO 2026-06-08 08:34:02 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr15:75,339,817
INFO 2026-06-08 08:34:02 MarkDuplicates Tracking 163480 as yet unmatched pairs. 3916 records in RAM.
INFO 2026-06-08 08:34:04 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr15:78,897,000
INFO 2026-06-08 08:34:04 MarkDuplicates Tracking 162589 as yet unmatched pairs. 3024 records in RAM.
INFO 2026-06-08 08:34:05 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr15:84,784,603
INFO 2026-06-08 08:34:05 MarkDuplicates Tracking 161942 as yet unmatched pairs. 2370 records in RAM.
INFO 2026-06-08 08:34:07 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr15:89,790,494
INFO 2026-06-08 08:34:07 MarkDuplicates Tracking 161308 as yet unmatched pairs. 1734 records in RAM.
INFO 2026-06-08 08:34:08 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr15:91,853,923
INFO 2026-06-08 08:34:08 MarkDuplicates Tracking 160231 as yet unmatched pairs. 656 records in RAM.
INFO 2026-06-08 08:34:10 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr16:63,674
INFO 2026-06-08 08:34:10 MarkDuplicates Tracking 159653 as yet unmatched pairs. 23167 records in RAM.
INFO 2026-06-08 08:34:11 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr16:1,220,751
INFO 2026-06-08 08:34:11 MarkDuplicates Tracking 158517 as yet unmatched pairs. 22028 records in RAM.
INFO 2026-06-08 08:34:13 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr16:1,978,427
INFO 2026-06-08 08:34:13 MarkDuplicates Tracking 157631 as yet unmatched pairs. 21142 records in RAM.
INFO 2026-06-08 08:34:15 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr16:2,583,438
INFO 2026-06-08 08:34:15 MarkDuplicates Tracking 156655 as yet unmatched pairs. 20163 records in RAM.
INFO 2026-06-08 08:34:16 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr16:3,022,840
INFO 2026-06-08 08:34:16 MarkDuplicates Tracking 156778 as yet unmatched pairs. 20285 records in RAM.
INFO 2026-06-08 08:34:18 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr16:4,362,021
INFO 2026-06-08 08:34:18 MarkDuplicates Tracking 155105 as yet unmatched pairs. 18612 records in RAM.
INFO 2026-06-08 08:34:20 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 2s. Last read position: chr16:10,916,393
INFO 2026-06-08 08:34:20 MarkDuplicates Tracking 154417 as yet unmatched pairs. 17922 records in RAM.
INFO 2026-06-08 08:34:22 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 2s. Last read position: chr16:14,857,249
INFO 2026-06-08 08:34:22 MarkDuplicates Tracking 153790 as yet unmatched pairs. 17288 records in RAM.
INFO 2026-06-08 08:34:24 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr16:16,251,048
INFO 2026-06-08 08:34:24 MarkDuplicates Tracking 153356 as yet unmatched pairs. 16854 records in RAM.
INFO 2026-06-08 08:34:25 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr16:18,519,301
INFO 2026-06-08 08:34:25 MarkDuplicates Tracking 153098 as yet unmatched pairs. 16595 records in RAM.
INFO 2026-06-08 08:34:27 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr16:21,405,142
INFO 2026-06-08 08:34:27 MarkDuplicates Tracking 152369 as yet unmatched pairs. 15862 records in RAM.
INFO 2026-06-08 08:34:28 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr16:22,479,633
INFO 2026-06-08 08:34:28 MarkDuplicates Tracking 151997 as yet unmatched pairs. 15486 records in RAM.
INFO 2026-06-08 08:34:29 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr16:27,225,756
INFO 2026-06-08 08:34:29 MarkDuplicates Tracking 151587 as yet unmatched pairs. 15075 records in RAM.
INFO 2026-06-08 08:34:31 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr16:28,830,733
INFO 2026-06-08 08:34:31 MarkDuplicates Tracking 151416 as yet unmatched pairs. 14901 records in RAM.
INFO 2026-06-08 08:34:32 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr16:29,485,544
INFO 2026-06-08 08:34:32 MarkDuplicates Tracking 150448 as yet unmatched pairs. 13932 records in RAM.
INFO 2026-06-08 08:34:34 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr16:29,991,352
INFO 2026-06-08 08:34:34 MarkDuplicates Tracking 149585 as yet unmatched pairs. 13067 records in RAM.
INFO 2026-06-08 08:34:35 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr16:30,264,894
INFO 2026-06-08 08:34:35 MarkDuplicates Tracking 148908 as yet unmatched pairs. 12386 records in RAM.
INFO 2026-06-08 08:34:36 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr16:30,751,141
INFO 2026-06-08 08:34:36 MarkDuplicates Tracking 148218 as yet unmatched pairs. 11695 records in RAM.
INFO 2026-06-08 08:34:38 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr16:31,190,349
INFO 2026-06-08 08:34:38 MarkDuplicates Tracking 147945 as yet unmatched pairs. 11422 records in RAM.
INFO 2026-06-08 08:34:39 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr16:49,728,824
INFO 2026-06-08 08:34:39 MarkDuplicates Tracking 146487 as yet unmatched pairs. 9963 records in RAM.
INFO 2026-06-08 08:34:41 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr16:56,608,988
INFO 2026-06-08 08:34:41 MarkDuplicates Tracking 157557 as yet unmatched pairs. 21030 records in RAM.
INFO 2026-06-08 08:34:43 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 2s. Last read position: chr16:57,469,230
INFO 2026-06-08 08:34:43 MarkDuplicates Tracking 144985 as yet unmatched pairs. 8456 records in RAM.
INFO 2026-06-08 08:34:46 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 2s. Last read position: chr16:58,719,246
INFO 2026-06-08 08:34:46 MarkDuplicates Tracking 144058 as yet unmatched pairs. 7528 records in RAM.
INFO 2026-06-08 08:34:48 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 2s. Last read position: chr16:67,542,711
INFO 2026-06-08 08:34:48 MarkDuplicates Tracking 143595 as yet unmatched pairs. 7064 records in RAM.
INFO 2026-06-08 08:34:50 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:68,691,825
INFO 2026-06-08 08:34:50 MarkDuplicates Tracking 143277 as yet unmatched pairs. 6745 records in RAM.
INFO 2026-06-08 08:34:51 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:69,960,421
INFO 2026-06-08 08:34:51 MarkDuplicates Tracking 141597 as yet unmatched pairs. 5064 records in RAM.
INFO 2026-06-08 08:34:53 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:72,794,555
INFO 2026-06-08 08:34:53 MarkDuplicates Tracking 140934 as yet unmatched pairs. 4399 records in RAM.
INFO 2026-06-08 08:34:54 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:77,194,247
INFO 2026-06-08 08:34:54 MarkDuplicates Tracking 140130 as yet unmatched pairs. 3595 records in RAM.
INFO 2026-06-08 08:34:56 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:84,977,128
INFO 2026-06-08 08:34:56 MarkDuplicates Tracking 139889 as yet unmatched pairs. 3347 records in RAM.
INFO 2026-06-08 08:34:57 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:88,643,311
INFO 2026-06-08 08:34:57 MarkDuplicates Tracking 140027 as yet unmatched pairs. 3476 records in RAM.
INFO 2026-06-08 08:34:59 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:89,284,758
INFO 2026-06-08 08:34:59 MarkDuplicates Tracking 137592 as yet unmatched pairs. 1041 records in RAM.
INFO 2026-06-08 08:35:00 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:90,006,432
INFO 2026-06-08 08:35:00 MarkDuplicates Tracking 136731 as yet unmatched pairs. 177 records in RAM.
INFO 2026-06-08 08:35:02 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr17:1,483,637
INFO 2026-06-08 08:35:02 MarkDuplicates Tracking 136091 as yet unmatched pairs. 33665 records in RAM.
INFO 2026-06-08 08:35:04 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr17:2,334,841
INFO 2026-06-08 08:35:04 MarkDuplicates Tracking 135149 as yet unmatched pairs. 32722 records in RAM.
INFO 2026-06-08 08:35:05 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr17:4,672,553
INFO 2026-06-08 08:35:05 MarkDuplicates Tracking 134363 as yet unmatched pairs. 31928 records in RAM.
INFO 2026-06-08 08:35:07 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr17:5,532,889
INFO 2026-06-08 08:35:07 MarkDuplicates Tracking 133528 as yet unmatched pairs. 31093 records in RAM.
INFO 2026-06-08 08:35:08 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr17:7,462,591
INFO 2026-06-08 08:35:08 MarkDuplicates Tracking 132751 as yet unmatched pairs. 30316 records in RAM.
INFO 2026-06-08 08:35:10 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr17:7,676,382
INFO 2026-06-08 08:35:10 MarkDuplicates Tracking 132175 as yet unmatched pairs. 29740 records in RAM.
INFO 2026-06-08 08:35:12 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr17:10,993,775
INFO 2026-06-08 08:35:12 MarkDuplicates Tracking 131330 as yet unmatched pairs. 28891 records in RAM.
INFO 2026-06-08 08:35:13 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr17:17,795,323
INFO 2026-06-08 08:35:13 MarkDuplicates Tracking 130670 as yet unmatched pairs. 28224 records in RAM.
INFO 2026-06-08 08:35:15 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 2s. Last read position: chr17:20,285,635
INFO 2026-06-08 08:35:15 MarkDuplicates Tracking 129903 as yet unmatched pairs. 27457 records in RAM.
INFO 2026-06-08 08:35:18 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 3s. Last read position: chr17:28,690,079
INFO 2026-06-08 08:35:18 MarkDuplicates Tracking 129165 as yet unmatched pairs. 26719 records in RAM.
INFO 2026-06-08 08:35:20 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr17:29,761,120
INFO 2026-06-08 08:35:20 MarkDuplicates Tracking 128565 as yet unmatched pairs. 26108 records in RAM.
INFO 2026-06-08 08:35:22 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr17:32,778,517
INFO 2026-06-08 08:35:22 MarkDuplicates Tracking 127819 as yet unmatched pairs. 25358 records in RAM.
INFO 2026-06-08 08:35:23 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr17:35,880,237
INFO 2026-06-08 08:35:23 MarkDuplicates Tracking 127062 as yet unmatched pairs. 24599 records in RAM.
INFO 2026-06-08 08:36:26 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 62s. Last read position: chr17:38,712,756
INFO 2026-06-08 08:36:26 MarkDuplicates Tracking 126440 as yet unmatched pairs. 23974 records in RAM.
INFO 2026-06-08 08:37:38 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 72s. Last read position: chr17:39,708,319
INFO 2026-06-08 08:37:38 MarkDuplicates Tracking 125911 as yet unmatched pairs. 23439 records in RAM.
INFO 2026-06-08 08:37:39 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 1s. Last read position: chr17:40,416,777
INFO 2026-06-08 08:37:39 MarkDuplicates Tracking 124907 as yet unmatched pairs. 22432 records in RAM.
INFO 2026-06-08 08:37:41 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:16:56s. Time for last 1,000,000: 1s. Last read position: chr17:42,219,399
INFO 2026-06-08 08:37:41 MarkDuplicates Tracking 124022 as yet unmatched pairs. 21543 records in RAM.
INFO 2026-06-08 08:37:42 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:16:58s. Time for last 1,000,000: 1s. Last read position: chr17:42,856,384
INFO 2026-06-08 08:37:42 MarkDuplicates Tracking 123191 as yet unmatched pairs. 20710 records in RAM.
INFO 2026-06-08 08:37:44 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:00s. Time for last 1,000,000: 1s. Last read position: chr17:44,314,733
INFO 2026-06-08 08:37:44 MarkDuplicates Tracking 122444 as yet unmatched pairs. 19961 records in RAM.
INFO 2026-06-08 08:37:46 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 1s. Last read position: chr17:45,149,970
INFO 2026-06-08 08:37:46 MarkDuplicates Tracking 121654 as yet unmatched pairs. 19169 records in RAM.
INFO 2026-06-08 08:37:47 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 1s. Last read position: chr17:47,292,188
INFO 2026-06-08 08:37:47 MarkDuplicates Tracking 121204 as yet unmatched pairs. 18719 records in RAM.
INFO 2026-06-08 08:37:49 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:04s. Time for last 1,000,000: 1s. Last read position: chr17:48,930,459
INFO 2026-06-08 08:37:49 MarkDuplicates Tracking 120373 as yet unmatched pairs. 17885 records in RAM.
INFO 2026-06-08 08:37:50 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:06s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,811
INFO 2026-06-08 08:37:50 MarkDuplicates Tracking 120300 as yet unmatched pairs. 17811 records in RAM.
INFO 2026-06-08 08:37:52 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:07s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,957
INFO 2026-06-08 08:37:52 MarkDuplicates Tracking 128970 as yet unmatched pairs. 26479 records in RAM.
INFO 2026-06-08 08:37:54 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,520
INFO 2026-06-08 08:37:54 MarkDuplicates Tracking 130877 as yet unmatched pairs. 28385 records in RAM.
INFO 2026-06-08 08:37:55 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,808
INFO 2026-06-08 08:37:55 MarkDuplicates Tracking 127692 as yet unmatched pairs. 25200 records in RAM.
INFO 2026-06-08 08:37:57 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,164
INFO 2026-06-08 08:37:57 MarkDuplicates Tracking 134050 as yet unmatched pairs. 31556 records in RAM.
INFO 2026-06-08 08:37:59 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,649
INFO 2026-06-08 08:37:59 MarkDuplicates Tracking 123642 as yet unmatched pairs. 21148 records in RAM.
INFO 2026-06-08 08:38:01 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 2s. Last read position: chr17:50,197,748
INFO 2026-06-08 08:38:01 MarkDuplicates Tracking 133788 as yet unmatched pairs. 31294 records in RAM.
INFO 2026-06-08 08:38:03 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 2s. Last read position: chr17:50,298,970
INFO 2026-06-08 08:38:03 MarkDuplicates Tracking 113246 as yet unmatched pairs. 10752 records in RAM.
INFO 2026-06-08 08:38:04 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 1s. Last read position: chr17:57,257,111
INFO 2026-06-08 08:38:04 MarkDuplicates Tracking 112871 as yet unmatched pairs. 10369 records in RAM.
INFO 2026-06-08 08:38:06 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 1s. Last read position: chr17:59,668,819
INFO 2026-06-08 08:38:06 MarkDuplicates Tracking 112481 as yet unmatched pairs. 9978 records in RAM.
INFO 2026-06-08 08:38:08 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:23s. Time for last 1,000,000: 2s. Last read position: chr17:61,950,899
INFO 2026-06-08 08:38:08 MarkDuplicates Tracking 111361 as yet unmatched pairs. 8858 records in RAM.
INFO 2026-06-08 08:38:10 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 2s. Last read position: chr17:64,499,928
INFO 2026-06-08 08:38:10 MarkDuplicates Tracking 110748 as yet unmatched pairs. 8241 records in RAM.
INFO 2026-06-08 08:38:12 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr17:68,523,784
INFO 2026-06-08 08:38:12 MarkDuplicates Tracking 112238 as yet unmatched pairs. 9728 records in RAM.
INFO 2026-06-08 08:38:14 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr17:75,038,998
INFO 2026-06-08 08:38:14 MarkDuplicates Tracking 109647 as yet unmatched pairs. 7131 records in RAM.
INFO 2026-06-08 08:38:16 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 2s. Last read position: chr17:75,847,911
INFO 2026-06-08 08:38:16 MarkDuplicates Tracking 108482 as yet unmatched pairs. 5963 records in RAM.
INFO 2026-06-08 08:38:18 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 2s. Last read position: chr17:77,216,485
INFO 2026-06-08 08:38:18 MarkDuplicates Tracking 107636 as yet unmatched pairs. 5115 records in RAM.
INFO 2026-06-08 08:38:20 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr17:78,973,085
INFO 2026-06-08 08:38:20 MarkDuplicates Tracking 107260 as yet unmatched pairs. 4729 records in RAM.
INFO 2026-06-08 08:38:21 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 1s. Last read position: chr17:80,344,772
INFO 2026-06-08 08:38:21 MarkDuplicates Tracking 105709 as yet unmatched pairs. 3178 records in RAM.
INFO 2026-06-08 08:38:23 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr17:81,455,274
INFO 2026-06-08 08:38:23 MarkDuplicates Tracking 104823 as yet unmatched pairs. 2283 records in RAM.
INFO 2026-06-08 08:38:24 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 1s. Last read position: chr17:81,860,411
INFO 2026-06-08 08:38:24 MarkDuplicates Tracking 103962 as yet unmatched pairs. 1422 records in RAM.
INFO 2026-06-08 08:38:26 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr17:82,322,910
INFO 2026-06-08 08:38:26 MarkDuplicates Tracking 103685 as yet unmatched pairs. 1144 records in RAM.
INFO 2026-06-08 08:38:27 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr18:3,272,940
INFO 2026-06-08 08:38:27 MarkDuplicates Tracking 102823 as yet unmatched pairs. 5248 records in RAM.
INFO 2026-06-08 08:38:29 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr18:9,399,344
INFO 2026-06-08 08:38:29 MarkDuplicates Tracking 101621 as yet unmatched pairs. 4045 records in RAM.
INFO 2026-06-08 08:38:31 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr18:22,171,269
INFO 2026-06-08 08:38:31 MarkDuplicates Tracking 100754 as yet unmatched pairs. 3175 records in RAM.
INFO 2026-06-08 08:38:32 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr18:32,412,600
INFO 2026-06-08 08:38:32 MarkDuplicates Tracking 100088 as yet unmatched pairs. 2507 records in RAM.
INFO 2026-06-08 08:38:33 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr18:49,282,018
INFO 2026-06-08 08:38:33 MarkDuplicates Tracking 99489 as yet unmatched pairs. 1903 records in RAM.
INFO 2026-06-08 08:38:35 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr18:59,152,582
INFO 2026-06-08 08:38:35 MarkDuplicates Tracking 98805 as yet unmatched pairs. 1218 records in RAM.
INFO 2026-06-08 08:38:37 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chr18:77,016,780
INFO 2026-06-08 08:38:37 MarkDuplicates Tracking 98257 as yet unmatched pairs. 667 records in RAM.
INFO 2026-06-08 08:38:39 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 2s. Last read position: chr19:804,684
INFO 2026-06-08 08:38:39 MarkDuplicates Tracking 97219 as yet unmatched pairs. 38253 records in RAM.
INFO 2026-06-08 08:38:42 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 2s. Last read position: chr19:1,123,553
INFO 2026-06-08 08:38:42 MarkDuplicates Tracking 96219 as yet unmatched pairs. 37253 records in RAM.
INFO 2026-06-08 08:38:43 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr19:1,823,625
INFO 2026-06-08 08:38:43 MarkDuplicates Tracking 95183 as yet unmatched pairs. 36214 records in RAM.
INFO 2026-06-08 08:38:45 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr19:2,476,264
INFO 2026-06-08 08:38:45 MarkDuplicates Tracking 94155 as yet unmatched pairs. 35184 records in RAM.
INFO 2026-06-08 08:38:47 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr19:3,984,303
INFO 2026-06-08 08:38:47 MarkDuplicates Tracking 92965 as yet unmatched pairs. 33992 records in RAM.
INFO 2026-06-08 08:38:48 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chr19:4,929,275
INFO 2026-06-08 08:38:48 MarkDuplicates Tracking 92388 as yet unmatched pairs. 33414 records in RAM.
INFO 2026-06-08 08:38:50 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr19:6,459,434
INFO 2026-06-08 08:38:50 MarkDuplicates Tracking 91108 as yet unmatched pairs. 32134 records in RAM.
INFO 2026-06-08 08:38:51 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr19:6,743,500
INFO 2026-06-08 08:38:51 MarkDuplicates Tracking 90502 as yet unmatched pairs. 31528 records in RAM.
INFO 2026-06-08 08:38:53 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr19:8,062,429
INFO 2026-06-08 08:38:53 MarkDuplicates Tracking 89600 as yet unmatched pairs. 30625 records in RAM.
INFO 2026-06-08 08:38:54 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr19:9,980,842
INFO 2026-06-08 08:38:54 MarkDuplicates Tracking 88847 as yet unmatched pairs. 29871 records in RAM.
INFO 2026-06-08 08:38:56 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr19:10,642,429
INFO 2026-06-08 08:38:56 MarkDuplicates Tracking 88006 as yet unmatched pairs. 29030 records in RAM.
INFO 2026-06-08 08:38:57 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr19:11,436,113
INFO 2026-06-08 08:38:57 MarkDuplicates Tracking 87667 as yet unmatched pairs. 28691 records in RAM.
INFO 2026-06-08 08:38:59 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr19:12,792,606
INFO 2026-06-08 08:38:59 MarkDuplicates Tracking 86898 as yet unmatched pairs. 27922 records in RAM.
INFO 2026-06-08 08:39:02 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 2s. Last read position: chr19:14,051,919
INFO 2026-06-08 08:39:02 MarkDuplicates Tracking 85660 as yet unmatched pairs. 26684 records in RAM.
INFO 2026-06-08 08:39:03 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr19:14,622,945
INFO 2026-06-08 08:39:03 MarkDuplicates Tracking 84533 as yet unmatched pairs. 25557 records in RAM.
INFO 2026-06-08 08:39:05 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr19:15,263,457
INFO 2026-06-08 08:39:05 MarkDuplicates Tracking 83964 as yet unmatched pairs. 24987 records in RAM.
INFO 2026-06-08 08:39:06 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr19:16,866,455
INFO 2026-06-08 08:39:06 MarkDuplicates Tracking 82789 as yet unmatched pairs. 23809 records in RAM.
INFO 2026-06-08 08:39:08 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr19:17,839,654
INFO 2026-06-08 08:39:08 MarkDuplicates Tracking 81889 as yet unmatched pairs. 22907 records in RAM.
INFO 2026-06-08 08:39:09 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr19:18,396,424
INFO 2026-06-08 08:39:09 MarkDuplicates Tracking 81141 as yet unmatched pairs. 22154 records in RAM.
INFO 2026-06-08 08:39:11 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr19:18,994,411
INFO 2026-06-08 08:39:11 MarkDuplicates Tracking 80066 as yet unmatched pairs. 21077 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr19:30,009,092
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 79454 as yet unmatched pairs. 20458 records in RAM.
INFO 2026-06-08 08:39:14 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr19:35,157,472
INFO 2026-06-08 08:39:14 MarkDuplicates Tracking 79112 as yet unmatched pairs. 20113 records in RAM.
INFO 2026-06-08 08:39:16 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr19:35,940,030
INFO 2026-06-08 08:39:16 MarkDuplicates Tracking 77125 as yet unmatched pairs. 18126 records in RAM.
INFO 2026-06-08 08:39:17 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr19:38,578,143
INFO 2026-06-08 08:39:17 MarkDuplicates Tracking 76293 as yet unmatched pairs. 17293 records in RAM.
INFO 2026-06-08 08:39:19 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr19:39,407,869
INFO 2026-06-08 08:39:19 MarkDuplicates Tracking 76567 as yet unmatched pairs. 17566 records in RAM.
INFO 2026-06-08 08:39:20 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr19:40,235,283
INFO 2026-06-08 08:39:20 MarkDuplicates Tracking 75790 as yet unmatched pairs. 16789 records in RAM.
INFO 2026-06-08 08:39:22 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 2s. Last read position: chr19:41,231,000
INFO 2026-06-08 08:39:22 MarkDuplicates Tracking 73831 as yet unmatched pairs. 14830 records in RAM.
INFO 2026-06-08 08:39:24 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr19:42,087,586
INFO 2026-06-08 08:39:24 MarkDuplicates Tracking 73066 as yet unmatched pairs. 14060 records in RAM.
INFO 2026-06-08 08:39:26 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr19:42,291,702
INFO 2026-06-08 08:39:26 MarkDuplicates Tracking 73445 as yet unmatched pairs. 14432 records in RAM.
INFO 2026-06-08 08:39:27 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr19:43,353,732
INFO 2026-06-08 08:39:27 MarkDuplicates Tracking 73524 as yet unmatched pairs. 14492 records in RAM.
INFO 2026-06-08 08:39:28 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr19:44,814,697
INFO 2026-06-08 08:39:28 MarkDuplicates Tracking 70865 as yet unmatched pairs. 11830 records in RAM.
INFO 2026-06-08 08:39:30 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr19:45,361,620
INFO 2026-06-08 08:39:30 MarkDuplicates Tracking 69626 as yet unmatched pairs. 10591 records in RAM.
INFO 2026-06-08 08:39:32 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr19:46,042,346
INFO 2026-06-08 08:39:32 MarkDuplicates Tracking 68432 as yet unmatched pairs. 9396 records in RAM.
INFO 2026-06-08 08:39:33 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr19:47,379,715
INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 67585 as yet unmatched pairs. 8549 records in RAM.
INFO 2026-06-08 08:39:34 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr19:48,625,910
INFO 2026-06-08 08:39:34 MarkDuplicates Tracking 66776 as yet unmatched pairs. 7740 records in RAM.
INFO 2026-06-08 08:39:36 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr19:49,108,201
INFO 2026-06-08 08:39:36 MarkDuplicates Tracking 66042 as yet unmatched pairs. 7005 records in RAM.
INFO 2026-06-08 08:39:38 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr19:49,625,125
INFO 2026-06-08 08:39:38 MarkDuplicates Tracking 65110 as yet unmatched pairs. 6073 records in RAM.
INFO 2026-06-08 08:39:39 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr19:49,908,403
INFO 2026-06-08 08:39:39 MarkDuplicates Tracking 64243 as yet unmatched pairs. 5206 records in RAM.
INFO 2026-06-08 08:39:40 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr19:51,768,783
INFO 2026-06-08 08:39:40 MarkDuplicates Tracking 63407 as yet unmatched pairs. 4370 records in RAM.
INFO 2026-06-08 08:39:42 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr19:54,105,957
INFO 2026-06-08 08:39:42 MarkDuplicates Tracking 63126 as yet unmatched pairs. 4089 records in RAM.
INFO 2026-06-08 08:39:44 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr19:54,458,558
INFO 2026-06-08 08:39:44 MarkDuplicates Tracking 62186 as yet unmatched pairs. 3149 records in RAM.
INFO 2026-06-08 08:39:46 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 2s. Last read position: chr19:55,386,650
INFO 2026-06-08 08:39:46 MarkDuplicates Tracking 62296 as yet unmatched pairs. 3259 records in RAM.
INFO 2026-06-08 08:39:47 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr19:57,211,543
INFO 2026-06-08 08:39:47 MarkDuplicates Tracking 59944 as yet unmatched pairs. 905 records in RAM.
INFO 2026-06-08 08:39:49 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr19:58,550,035
INFO 2026-06-08 08:39:49 MarkDuplicates Tracking 59302 as yet unmatched pairs. 263 records in RAM.
INFO 2026-06-08 08:39:50 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr20:1,921,567
INFO 2026-06-08 08:39:50 MarkDuplicates Tracking 59642 as yet unmatched pairs. 12134 records in RAM.
INFO 2026-06-08 08:39:52 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr20:3,784,673
INFO 2026-06-08 08:39:52 MarkDuplicates Tracking 57841 as yet unmatched pairs. 10329 records in RAM.
INFO 2026-06-08 08:39:53 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr20:10,614,032
INFO 2026-06-08 08:39:53 MarkDuplicates Tracking 56615 as yet unmatched pairs. 9097 records in RAM.
INFO 2026-06-08 08:39:55 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr20:23,048,412
INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 56132 as yet unmatched pairs. 8611 records in RAM.
INFO 2026-06-08 08:39:56 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr20:32,369,016
INFO 2026-06-08 08:39:56 MarkDuplicates Tracking 55405 as yet unmatched pairs. 7884 records in RAM.
INFO 2026-06-08 08:39:58 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr20:35,176,248
INFO 2026-06-08 08:39:58 MarkDuplicates Tracking 55288 as yet unmatched pairs. 7765 records in RAM.
INFO 2026-06-08 08:39:59 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr20:36,892,955
INFO 2026-06-08 08:39:59 MarkDuplicates Tracking 53854 as yet unmatched pairs. 6327 records in RAM.
INFO 2026-06-08 08:40:01 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr20:40,687,903
INFO 2026-06-08 08:40:01 MarkDuplicates Tracking 53416 as yet unmatched pairs. 5889 records in RAM.
INFO 2026-06-08 08:40:02 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr20:45,416,154
INFO 2026-06-08 08:40:02 MarkDuplicates Tracking 52097 as yet unmatched pairs. 4570 records in RAM.
INFO 2026-06-08 08:40:04 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr20:47,663,489
INFO 2026-06-08 08:40:04 MarkDuplicates Tracking 51508 as yet unmatched pairs. 3981 records in RAM.
INFO 2026-06-08 08:40:05 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr20:50,191,909
INFO 2026-06-08 08:40:05 MarkDuplicates Tracking 51504 as yet unmatched pairs. 3975 records in RAM.
INFO 2026-06-08 08:40:07 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr20:58,713,492
INFO 2026-06-08 08:40:07 MarkDuplicates Tracking 49939 as yet unmatched pairs. 2409 records in RAM.
INFO 2026-06-08 08:40:08 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr20:62,332,593
INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 48995 as yet unmatched pairs. 1463 records in RAM.
INFO 2026-06-08 08:40:10 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr20:63,590,458
INFO 2026-06-08 08:40:10 MarkDuplicates Tracking 48213 as yet unmatched pairs. 681 records in RAM.
INFO 2026-06-08 08:40:12 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr21:7,054,543
INFO 2026-06-08 08:40:12 MarkDuplicates Tracking 47361 as yet unmatched pairs. 12393 records in RAM.
INFO 2026-06-08 08:40:13 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr21:8,214,963
INFO 2026-06-08 08:40:13 MarkDuplicates Tracking 47068 as yet unmatched pairs. 12100 records in RAM.
INFO 2026-06-08 08:40:14 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr21:8,217,979
INFO 2026-06-08 08:40:14 MarkDuplicates Tracking 45326 as yet unmatched pairs. 10334 records in RAM.
INFO 2026-06-08 08:40:15 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,912
INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 44760 as yet unmatched pairs. 9764 records in RAM.
INFO 2026-06-08 08:40:16 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 0s. Last read position: chr21:8,394,881
INFO 2026-06-08 08:40:16 MarkDuplicates Tracking 44739 as yet unmatched pairs. 9742 records in RAM.
INFO 2026-06-08 08:40:17 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 0s. Last read position: chr21:8,399,879
INFO 2026-06-08 08:40:17 MarkDuplicates Tracking 44387 as yet unmatched pairs. 9384 records in RAM.
INFO 2026-06-08 08:40:18 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr21:8,436,627
INFO 2026-06-08 08:40:18 MarkDuplicates Tracking 42803 as yet unmatched pairs. 7795 records in RAM.
INFO 2026-06-08 08:40:19 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 0s. Last read position: chr21:8,442,821
INFO 2026-06-08 08:40:19 MarkDuplicates Tracking 42471 as yet unmatched pairs. 7463 records in RAM.
INFO 2026-06-08 08:40:20 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 0s. Last read position: chr21:8,444,659
INFO 2026-06-08 08:40:20 MarkDuplicates Tracking 41286 as yet unmatched pairs. 6277 records in RAM.
INFO 2026-06-08 08:40:22 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr21:26,000,064
INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 40968 as yet unmatched pairs. 5959 records in RAM.
INFO 2026-06-08 08:40:23 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr21:33,325,073
INFO 2026-06-08 08:40:23 MarkDuplicates Tracking 39429 as yet unmatched pairs. 4420 records in RAM.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr21:37,160,808
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 38617 as yet unmatched pairs. 3607 records in RAM.
INFO 2026-06-08 08:40:26 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr21:43,418,350
INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 38080 as yet unmatched pairs. 3067 records in RAM.
INFO 2026-06-08 08:40:28 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr21:44,862,764
INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 37333 as yet unmatched pairs. 2320 records in RAM.
INFO 2026-06-08 08:40:29 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr21:45,510,107
INFO 2026-06-08 08:40:29 MarkDuplicates Tracking 36718 as yet unmatched pairs. 1704 records in RAM.
INFO 2026-06-08 08:40:31 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr22:17,085,141
INFO 2026-06-08 08:40:31 MarkDuplicates Tracking 35292 as yet unmatched pairs. 10581 records in RAM.
INFO 2026-06-08 08:40:32 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr22:20,727,360
INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 34189 as yet unmatched pairs. 9478 records in RAM.
INFO 2026-06-08 08:40:34 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr22:23,253,946
INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 34313 as yet unmatched pairs. 9600 records in RAM.
INFO 2026-06-08 08:40:35 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr22:27,798,978
INFO 2026-06-08 08:40:35 MarkDuplicates Tracking 32754 as yet unmatched pairs. 8041 records in RAM.
INFO 2026-06-08 08:40:37 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr22:29,525,925
INFO 2026-06-08 08:40:37 MarkDuplicates Tracking 32059 as yet unmatched pairs. 7346 records in RAM.
INFO 2026-06-08 08:40:38 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr22:31,956,159
INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 31474 as yet unmatched pairs. 6761 records in RAM.
INFO 2026-06-08 08:40:40 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr22:36,288,298
INFO 2026-06-08 08:40:40 MarkDuplicates Tracking 30568 as yet unmatched pairs. 5855 records in RAM.
INFO 2026-06-08 08:40:41 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr22:37,296,056
INFO 2026-06-08 08:40:41 MarkDuplicates Tracking 29709 as yet unmatched pairs. 4996 records in RAM.
INFO 2026-06-08 08:40:43 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr22:38,738,741
INFO 2026-06-08 08:40:43 MarkDuplicates Tracking 28976 as yet unmatched pairs. 4262 records in RAM.
INFO 2026-06-08 08:40:45 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr22:40,844,894
INFO 2026-06-08 08:40:45 MarkDuplicates Tracking 28136 as yet unmatched pairs. 3419 records in RAM.
INFO 2026-06-08 08:40:46 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr22:42,565,088
INFO 2026-06-08 08:40:46 MarkDuplicates Tracking 27279 as yet unmatched pairs. 2562 records in RAM.
INFO 2026-06-08 08:40:48 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr22:49,628,485
INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 26427 as yet unmatched pairs. 1709 records in RAM.
INFO 2026-06-08 08:40:49 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr22:50,526,019
INFO 2026-06-08 08:40:49 MarkDuplicates Tracking 26196 as yet unmatched pairs. 1478 records in RAM.
INFO 2026-06-08 08:40:51 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chrX:3,829,097
INFO 2026-06-08 08:40:51 MarkDuplicates Tracking 24371 as yet unmatched pairs. 11136 records in RAM.
INFO 2026-06-08 08:40:52 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chrX:21,845,217
INFO 2026-06-08 08:40:52 MarkDuplicates Tracking 23741 as yet unmatched pairs. 10463 records in RAM.
INFO 2026-06-08 08:40:54 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chrX:40,581,025
INFO 2026-06-08 08:40:54 MarkDuplicates Tracking 23383 as yet unmatched pairs. 10104 records in RAM.
INFO 2026-06-08 08:40:55 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chrX:47,214,845
INFO 2026-06-08 08:40:55 MarkDuplicates Tracking 22343 as yet unmatched pairs. 9064 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chrX:48,815,032
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 21588 as yet unmatched pairs. 8309 records in RAM.
INFO 2026-06-08 08:40:58 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chrX:52,190,454
INFO 2026-06-08 08:40:58 MarkDuplicates Tracking 20646 as yet unmatched pairs. 7365 records in RAM.
INFO 2026-06-08 08:41:00 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chrX:55,488,636
INFO 2026-06-08 08:41:00 MarkDuplicates Tracking 19908 as yet unmatched pairs. 6627 records in RAM.
INFO 2026-06-08 08:41:01 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chrX:71,134,356
INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 19276 as yet unmatched pairs. 5995 records in RAM.
INFO 2026-06-08 08:41:03 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chrX:77,676,243
INFO 2026-06-08 08:41:03 MarkDuplicates Tracking 19040 as yet unmatched pairs. 5759 records in RAM.
INFO 2026-06-08 08:41:05 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chrX:103,377,534
INFO 2026-06-08 08:41:05 MarkDuplicates Tracking 18269 as yet unmatched pairs. 4988 records in RAM.
INFO 2026-06-08 08:41:06 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chrX:118,749,765
INFO 2026-06-08 08:41:06 MarkDuplicates Tracking 17630 as yet unmatched pairs. 4349 records in RAM.
INFO 2026-06-08 08:41:08 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chrX:130,013,786
INFO 2026-06-08 08:41:08 MarkDuplicates Tracking 16858 as yet unmatched pairs. 3577 records in RAM.
INFO 2026-06-08 08:41:10 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chrX:149,549,636
INFO 2026-06-08 08:41:10 MarkDuplicates Tracking 15915 as yet unmatched pairs. 2631 records in RAM.
INFO 2026-06-08 08:41:11 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chrX:153,910,023
INFO 2026-06-08 08:41:11 MarkDuplicates Tracking 15390 as yet unmatched pairs. 2106 records in RAM.
INFO 2026-06-08 08:41:13 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chrX:154,358,465
INFO 2026-06-08 08:41:13 MarkDuplicates Tracking 14768 as yet unmatched pairs. 1484 records in RAM.
INFO 2026-06-08 08:41:15 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 2s. Last read position: chrX:154,488,751
INFO 2026-06-08 08:41:15 MarkDuplicates Tracking 13588 as yet unmatched pairs. 304 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chrM:6,220
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 13571 as yet unmatched pairs. 1014 records in RAM.
INFO 2026-06-08 08:41:18 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: GL000220.1:107,402
INFO 2026-06-08 08:41:18 MarkDuplicates Tracking 12492 as yet unmatched pairs. 4784 records in RAM.
INFO 2026-06-08 08:41:19 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,249
INFO 2026-06-08 08:41:19 MarkDuplicates Tracking 12246 as yet unmatched pairs. 4538 records in RAM.
INFO 2026-06-08 08:41:20 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,575
INFO 2026-06-08 08:41:20 MarkDuplicates Tracking 7984 as yet unmatched pairs. 275 records in RAM.
INFO 2026-06-08 08:41:21 MarkDuplicates Read 641,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: GL000220.1:155,301
INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 7994 as yet unmatched pairs. 285 records in RAM.
INFO 2026-06-08 08:41:23 MarkDuplicates Read 642,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: GL000220.1:159,530
INFO 2026-06-08 08:41:23 MarkDuplicates Tracking 7743 as yet unmatched pairs. 34 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 643,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: KI270733.1:122,740
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 7973 as yet unmatched pairs. 7966 records in RAM.
INFO 2026-06-08 08:41:25 MarkDuplicates Read 644,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: KI270733.1:130,433
INFO 2026-06-08 08:41:25 MarkDuplicates Tracking 7522 as yet unmatched pairs. 7515 records in RAM.
INFO 2026-06-08 08:41:27 MarkDuplicates Read 645,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,205
INFO 2026-06-08 08:41:27 MarkDuplicates Tracking 4512 as yet unmatched pairs. 4505 records in RAM.
INFO 2026-06-08 08:41:28 MarkDuplicates Read 646,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: KI270733.1:171,704
INFO 2026-06-08 08:41:28 MarkDuplicates Tracking 3280 as yet unmatched pairs. 3273 records in RAM.
INFO 2026-06-08 08:41:29 MarkDuplicates Read 647,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,415
INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 138 as yet unmatched pairs. 131 records in RAM.
INFO 2026-06-08 08:41:30 MarkDuplicates Read 648,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 0s. Last read position: KI270733.1:178,796
INFO 2026-06-08 08:41:30 MarkDuplicates Tracking 7 as yet unmatched pairs. 0 records in RAM.
INFO 2026-06-08 08:41:30 MarkDuplicates Read 648151193 records. 0 pairs never matched.
INFO 2026-06-08 08:42:21 MarkDuplicates After buildSortedReadEndLists freeMemory: 204137416; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:42:21 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:42:25 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:42:26 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:42:40 OpticalDuplicateFinder Large duplicate set. size = 1109
INFO 2026-06-08 08:42:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,170
INFO 2026-06-08 08:42:46 OpticalDuplicateFinder Large duplicate set. size = 1146
INFO 2026-06-08 08:42:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,362
INFO 2026-06-08 08:42:46 OpticalDuplicateFinder Large duplicate set. size = 1041
INFO 2026-06-08 08:42:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,122
INFO 2026-06-08 08:42:46 OpticalDuplicateFinder Large duplicate set. size = 1062
INFO 2026-06-08 08:42:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,492
INFO 2026-06-08 08:42:47 OpticalDuplicateFinder Large duplicate set. size = 1298
INFO 2026-06-08 08:42:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,512
INFO 2026-06-08 08:42:47 OpticalDuplicateFinder Large duplicate set. size = 1160
INFO 2026-06-08 08:42:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,232
INFO 2026-06-08 08:42:47 OpticalDuplicateFinder Large duplicate set. size = 1507
INFO 2026-06-08 08:42:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,023
INFO 2026-06-08 08:42:47 OpticalDuplicateFinder Large duplicate set. size = 1431
INFO 2026-06-08 08:42:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,110
INFO 2026-06-08 08:42:47 OpticalDuplicateFinder Large duplicate set. size = 1006
INFO 2026-06-08 08:42:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,250
INFO 2026-06-08 08:42:47 OpticalDuplicateFinder Large duplicate set. size = 1234
INFO 2026-06-08 08:42:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,279
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder Large duplicate set. size = 1739
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,665
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder Large duplicate set. size = 1282
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,677
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder Large duplicate set. size = 1918
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,467
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder Large duplicate set. size = 1770
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,678
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder Large duplicate set. size = 1029
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,613
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder Large duplicate set. size = 1066
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,694
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder Large duplicate set. size = 1306
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,996
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder Large duplicate set. size = 1600
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,549
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder Large duplicate set. size = 1066
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,367
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder Large duplicate set. size = 1338
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,892
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder Large duplicate set. size = 1833
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,048
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder Large duplicate set. size = 1655
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,713
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder Large duplicate set. size = 3538
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,829
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,827
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,903
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder Large duplicate set. size = 1127
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,480
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder Large duplicate set. size = 1341
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,386
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder Large duplicate set. size = 1486
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,493
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder Large duplicate set. size = 1035
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,780
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder Large duplicate set. size = 1157
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,290
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder Large duplicate set. size = 1060
INFO 2026-06-08 08:42:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,398
INFO 2026-06-08 08:42:54 OpticalDuplicateFinder Large duplicate set. size = 1009
INFO 2026-06-08 08:42:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,774
INFO 2026-06-08 08:42:56 OpticalDuplicateFinder Large duplicate set. size = 1489
INFO 2026-06-08 08:42:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,087
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder Large duplicate set. size = 1161
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,514
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder Large duplicate set. size = 1013
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,832
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder Large duplicate set. size = 1308
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,263
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder Large duplicate set. size = 1844
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,044
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder Large duplicate set. size = 1535
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,139
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder Large duplicate set. size = 1311
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,268
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder Large duplicate set. size = 1918
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,303
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder Large duplicate set. size = 1538
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,257
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder Large duplicate set. size = 1100
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,597
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder Large duplicate set. size = 1210
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,164
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder Large duplicate set. size = 1805
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,648
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder Large duplicate set. size = 1518
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,250
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder Large duplicate set. size = 1452
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,419
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder Large duplicate set. size = 1224
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,344
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder Large duplicate set. size = 1278
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,915
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder Large duplicate set. size = 1009
INFO 2026-06-08 08:43:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,137
INFO 2026-06-08 08:43:19 OpticalDuplicateFinder Large duplicate set. size = 1231
INFO 2026-06-08 08:43:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,946
INFO 2026-06-08 08:43:19 OpticalDuplicateFinder Large duplicate set. size = 1075
INFO 2026-06-08 08:43:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,641
INFO 2026-06-08 08:43:20 OpticalDuplicateFinder Large duplicate set. size = 1528
INFO 2026-06-08 08:43:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,498
INFO 2026-06-08 08:43:20 OpticalDuplicateFinder Large duplicate set. size = 1146
INFO 2026-06-08 08:43:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,296
INFO 2026-06-08 08:43:44 OpticalDuplicateFinder Large duplicate set. size = 1408
INFO 2026-06-08 08:43:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,807
INFO 2026-06-08 08:43:44 OpticalDuplicateFinder Large duplicate set. size = 1804
INFO 2026-06-08 08:43:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,241
INFO 2026-06-08 08:43:44 OpticalDuplicateFinder Large duplicate set. size = 1177
INFO 2026-06-08 08:43:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,524
INFO 2026-06-08 08:43:44 OpticalDuplicateFinder Large duplicate set. size = 1305
INFO 2026-06-08 08:43:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,630
INFO 2026-06-08 08:43:44 OpticalDuplicateFinder Large duplicate set. size = 1816
INFO 2026-06-08 08:43:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,142
INFO 2026-06-08 08:43:55 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-08 08:43:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,258
INFO 2026-06-08 08:43:55 OpticalDuplicateFinder Large duplicate set. size = 1304
INFO 2026-06-08 08:43:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,545
INFO 2026-06-08 08:43:55 OpticalDuplicateFinder Large duplicate set. size = 1039
INFO 2026-06-08 08:43:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,476
INFO 2026-06-08 08:44:00 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:44:01 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:45:06 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:45:10 MarkDuplicates After generateDuplicateIndexes freeMemory: 203923440; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:45:10 MarkDuplicates Marking 334045894 records as duplicates.
INFO 2026-06-08 08:45:10 MarkDuplicates Found 23150226 optical duplicate clusters.
INFO 2026-06-08 08:45:10 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:45:26 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:22,647,447
INFO 2026-06-08 08:45:42 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:31s. Time for last 10,000,000: 15s. Last read position: chr1:43,598,730
INFO 2026-06-08 08:45:59 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:48s. Time for last 10,000,000: 17s. Last read position: chr1:116,754,881
INFO 2026-06-08 08:46:15 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:05s. Time for last 10,000,000: 16s. Last read position: chr1:155,479,039
INFO 2026-06-08 08:46:32 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:21s. Time for last 10,000,000: 16s. Last read position: chr1:200,848,449
INFO 2026-06-08 08:46:48 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:37s. Time for last 10,000,000: 16s. Last read position: chr2:3,498,969
INFO 2026-06-08 08:47:05 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:54s. Time for last 10,000,000: 16s. Last read position: chr2:55,234,856
INFO 2026-06-08 08:47:20 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:10s. Time for last 10,000,000: 15s. Last read position: chr2:111,120,973
INFO 2026-06-08 08:47:36 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:25s. Time for last 10,000,000: 15s. Last read position: chr2:189,053,456
INFO 2026-06-08 08:47:51 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:41s. Time for last 10,000,000: 15s. Last read position: chr2:215,428,179
INFO 2026-06-08 08:48:06 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:56s. Time for last 10,000,000: 15s. Last read position: chr3:15,429,913
INFO 2026-06-08 08:48:21 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:11s. Time for last 10,000,000: 14s. Last read position: chr3:52,455,670
INFO 2026-06-08 08:48:36 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:26s. Time for last 10,000,000: 14s. Last read position: chr3:134,360,370
INFO 2026-06-08 08:48:51 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:40s. Time for last 10,000,000: 14s. Last read position: chr4:1,739,706
INFO 2026-06-08 08:49:06 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:55s. Time for last 10,000,000: 14s. Last read position: chr4:87,975,791
INFO 2026-06-08 08:49:21 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:11s. Time for last 10,000,000: 15s. Last read position: chr5:1,337,919
INFO 2026-06-08 08:49:36 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:26s. Time for last 10,000,000: 15s. Last read position: chr5:96,818,856
INFO 2026-06-08 08:49:51 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:41s. Time for last 10,000,000: 15s. Last read position: chr5:150,405,106
INFO 2026-06-08 08:50:06 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:56s. Time for last 10,000,000: 14s. Last read position: chr5:180,608,995
INFO 2026-06-08 08:50:21 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:11s. Time for last 10,000,000: 14s. Last read position: chr6:31,829,573
INFO 2026-06-08 08:50:36 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:25s. Time for last 10,000,000: 14s. Last read position: chr6:63,579,287
INFO 2026-06-08 08:50:51 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:40s. Time for last 10,000,000: 15s. Last read position: chr6:158,503,126
INFO 2026-06-08 08:51:06 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:05:56s. Time for last 10,000,000: 15s. Last read position: chr7:37,444,949
INFO 2026-06-08 08:51:21 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:10s. Time for last 10,000,000: 14s. Last read position: chr7:96,694,849
INFO 2026-06-08 08:51:36 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:25s. Time for last 10,000,000: 14s. Last read position: chr7:142,796,880
INFO 2026-06-08 08:51:51 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:40s. Time for last 10,000,000: 14s. Last read position: chr8:38,429,856
INFO 2026-06-08 08:52:06 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:06:55s. Time for last 10,000,000: 15s. Last read position: chr8:133,284,910
INFO 2026-06-08 08:52:21 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:10s. Time for last 10,000,000: 14s. Last read position: chr9:35,741,767
INFO 2026-06-08 08:52:35 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:25s. Time for last 10,000,000: 14s. Last read position: chr9:115,086,691
INFO 2026-06-08 08:52:50 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:40s. Time for last 10,000,000: 14s. Last read position: chr9:136,943,927
INFO 2026-06-08 08:53:08 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:07:57s. Time for last 10,000,000: 17s. Last read position: chr10:68,034,050
INFO 2026-06-08 08:53:25 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:14s. Time for last 10,000,000: 16s. Last read position: chr10:113,841,475
INFO 2026-06-08 08:53:40 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:29s. Time for last 10,000,000: 14s. Last read position: chr11:18,615,201
INFO 2026-06-08 08:53:54 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:44s. Time for last 10,000,000: 14s. Last read position: chr11:64,246,480
INFO 2026-06-08 08:54:09 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:08:59s. Time for last 10,000,000: 14s. Last read position: chr11:76,539,627
INFO 2026-06-08 08:54:24 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:13s. Time for last 10,000,000: 14s. Last read position: chr11:130,143,379
INFO 2026-06-08 08:54:39 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:28s. Time for last 10,000,000: 14s. Last read position: chr12:48,925,297
INFO 2026-06-08 08:54:56 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:09:45s. Time for last 10,000,000: 16s. Last read position: chr12:57,488,165
INFO 2026-06-08 08:55:11 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:00s. Time for last 10,000,000: 14s. Last read position: chr12:120,215,578
INFO 2026-06-08 08:55:27 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:16s. Time for last 10,000,000: 16s. Last read position: chr13:95,833,031
INFO 2026-06-08 08:55:44 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:33s. Time for last 10,000,000: 16s. Last read position: chr14:49,586,681
INFO 2026-06-08 08:55:59 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:10:49s. Time for last 10,000,000: 15s. Last read position: chr14:88,011,618
INFO 2026-06-08 08:56:14 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:04s. Time for last 10,000,000: 14s. Last read position: chr14:105,708,394
INFO 2026-06-08 08:56:31 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:20s. Time for last 10,000,000: 16s. Last read position: chr15:44,715,613
INFO 2026-06-08 08:56:47 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:11:36s. Time for last 10,000,000: 15s. Last read position: chr15:84,784,603
INFO 2026-06-08 08:57:01 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:11:51s. Time for last 10,000,000: 14s. Last read position: chr16:14,857,249
INFO 2026-06-08 08:57:16 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:06s. Time for last 10,000,000: 15s. Last read position: chr16:30,751,141
INFO 2026-06-08 08:57:32 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:22s. Time for last 10,000,000: 15s. Last read position: chr16:77,194,247
INFO 2026-06-08 08:57:47 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:12:37s. Time for last 10,000,000: 15s. Last read position: chr17:7,676,382
INFO 2026-06-08 08:58:03 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:12:53s. Time for last 10,000,000: 15s. Last read position: chr17:40,416,777
INFO 2026-06-08 08:58:18 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:08s. Time for last 10,000,000: 14s. Last read position: chr17:50,191,808
INFO 2026-06-08 08:58:33 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:23s. Time for last 10,000,000: 15s. Last read position: chr17:75,038,998
INFO 2026-06-08 08:58:48 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:13:38s. Time for last 10,000,000: 14s. Last read position: chr18:22,171,269
INFO 2026-06-08 08:59:03 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:13:52s. Time for last 10,000,000: 14s. Last read position: chr19:4,929,275
INFO 2026-06-08 08:59:18 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:07s. Time for last 10,000,000: 14s. Last read position: chr19:15,263,457
INFO 2026-06-08 08:59:33 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:14:23s. Time for last 10,000,000: 15s. Last read position: chr19:40,235,283
INFO 2026-06-08 08:59:48 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:14:38s. Time for last 10,000,000: 14s. Last read position: chr19:49,108,201
INFO 2026-06-08 09:00:05 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:14:55s. Time for last 10,000,000: 17s. Last read position: chr20:3,784,673
INFO 2026-06-08 09:00:26 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:16s. Time for last 10,000,000: 21s. Last read position: chr20:58,713,492
INFO 2026-06-08 09:00:40 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:15:29s. Time for last 10,000,000: 13s. Last read position: chr21:8,442,821
INFO 2026-06-08 09:00:54 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:15:44s. Time for last 10,000,000: 14s. Last read position: chr22:23,253,946
INFO 2026-06-08 09:01:09 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:15:59s. Time for last 10,000,000: 14s. Last read position: chr22:50,526,019
INFO 2026-06-08 09:01:24 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:16:13s. Time for last 10,000,000: 14s. Last read position: chrX:103,377,534
INFO 2026-06-08 09:01:38 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:16:28s. Time for last 10,000,000: 14s. Last read position: GL000220.1:116,575
INFO 2026-06-08 09:01:55 MarkDuplicates Written 650,000,000 records. Elapsed time: 00:16:44s. Time for last 10,000,000: 16s. Last read position: */*
INFO 2026-06-08 09:02:00 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:02:00 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:02:00 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:02:00 MarkDuplicates Before output close freeMemory: 203863832; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:02:00 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:02:00 MarkDuplicates After output close freeMemory: 104120040; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:02:00 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 41.29 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory