File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/7a7a04789898161e6303e6b21654fc/.command.out
Size
1.7 KB
Attempt
  AIH curated blacklist: matched 9 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 127
  Pass (FILTER=PASS): 18 (14.2%)
  Fail (FILTER=FAIL): 109 (85.8%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 9
  All 9 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 18
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 16
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 15
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 13
  confidence_below_min(medium<high): 8
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 6
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 5
  confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 5
  confidence_below_min(medium<high);aih_curated_blacklist: 4
  confidence_below_min(low<high): 4
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 3
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 3
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 2
  aih_curated_blacklist: 1
  total_reads_below_min(4.0<8.0);aih_curated_blacklist: 1

Breakdown by confidence:
  high: 18 pass, 3 fail (total: 21)
  low: 0 pass, 83 fail (total: 83)
  medium: 0 pass, 23 fail (total: 23)
Arriba filter: 127 rows -> 18 PASS; wrote V4_0001_RNA_0005_23H5VFLT4_s01.arriba.fusions.filtered.tsv and V4_0001_RNA_0005_23H5VFLT4_s01.arriba.fusions.filtered_pass_only.tsv
Summary written to: V4_0001_RNA_0005_23H5VFLT4_s01.arriba.fusions.filter_summary.txt