Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/438350ea9655e318412c098d495d49/HD789_0002_RNA_0008_23H5VFLT4_s19.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/72a08075c3b69d974e03d444b715ad/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/72a08075c3b69d974e03d444b715ad/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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Processed 593000000 records
paired = 294673503
unpaired = 3670616
MERGED PAIRED END READS = 294673503
MATES PROCESSED = 593017622
TOTAL READS     = 298344119
DISTINCT READS  = 1.57404e+08
DISTINCT COUNTS = 703
MAX COUNT       = 620432
COUNTS OF 1     = 9.39074e+07
MAX TERMS       = 100
OBSERVED COUNTS (620433)
1	93907377
2	34465914
3	14211858
4	6460931
5	3214760
6	1739052
7	1010479
8	624987
9	409956
10	281879
11	200819
12	149423
13	113764
14	88115
15	70100
16	57052
17	46588
18	38853
19	32347
20	27841
21	23594
22	20526
23	17954
24	15862
25	13779
26	12309
27	10970
28	9656
29	8788
30	7857
31	7122
32	6442
33	5880
34	5354
35	4921
36	4413
37	4182
38	3783
39	3490
40	3197
41	2995
42	2757
43	2571
44	2413
45	2296
46	2174
47	1955
48	1820
49	1746
50	1705
51	1582
52	1490
53	1358
54	1357
55	1276
56	1192
57	1101
58	1041
59	1029
60	914
61	857
62	847
63	838
64	787
65	771
66	773
67	707
68	643
69	630
70	586
71	530
72	545
73	539
74	491
75	500
76	424
77	437
78	438
79	402
80	391
81	377
82	372
83	334
84	356
85	329
86	305
87	299
88	321
89	269
90	267
91	265
92	260
93	268
94	258
95	240
96	225
97	234
98	210
99	197
100	195
101	175
102	188
103	170
104	176
105	163
106	157
107	166
108	158
109	178
110	156
111	130
112	171
113	159
114	132
115	134
116	107
117	115
118	136
119	124
120	110
121	114
122	109
123	106
124	121
125	105
126	92
127	101
128	99
129	81
130	88
131	71
132	72
133	84
134	91
135	72
136	75
137	77
138	74
139	74
140	66
141	75
142	67
143	78
144	75
145	70
146	59
147	62
148	48
149	54
150	55
151	70
152	64
153	46
154	49
155	56
156	50
157	44
158	49
159	46
160	48
161	52
162	39
163	34
164	40
165	45
166	32
167	36
168	52
169	35
170	30
171	50
172	42
173	38
174	37
175	33
176	36
177	36
178	36
179	40
180	37
181	35
182	26
183	41
184	33
185	28
186	34
187	34
188	37
189	26
190	41
191	28
192	32
193	24
194	32
195	25
196	18
197	19
198	20
199	18
200	24
201	28
202	21
203	28
204	17
205	25
206	27
207	14
208	21
209	20
210	20
211	19
212	25
213	26
214	29
215	22
216	13
217	18
218	16
219	28
220	11
221	16
222	17
223	19
224	18
225	9
226	20
227	14
228	21
229	17
230	8
231	13
232	19
233	15
234	13
235	11
236	11
237	19
238	11
239	10
240	13
241	8
242	18
243	15
244	12
245	11
246	10
247	9
248	11
249	7
250	12
251	12
252	10
253	14
254	19
255	14
256	14
257	6
258	9
259	11
260	8
261	12
262	15
263	13
264	5
265	13
266	12
267	12
268	11
269	15
270	6
271	14
272	17
273	11
274	19
275	10
276	11
277	6
278	4
279	7
280	4
281	9
282	10
283	4
284	7
285	7
286	7
287	12
288	12
289	5
290	4
291	11
292	9
293	8
294	7
295	11
296	5
297	5
298	4
299	6
300	4
301	6
302	5
303	5
304	9
305	9
306	4
307	5
308	2
309	6
310	11
311	7
312	5
313	5
314	3
315	6
316	4
317	7
318	7
319	4
320	3
321	4
322	10
323	9
324	8
325	5
326	9
327	5
329	4
330	2
331	3
332	3
333	6
334	4
335	6
336	5
337	4
338	2
339	9
340	3
341	6
342	1
343	6
344	5
345	2
346	6
347	4
348	6
349	6
350	3
351	7
352	7
353	2
354	4
355	2
356	5
357	7
358	3
359	3
360	3
361	3
362	1
363	3
364	2
365	3
366	5
367	5
368	8
369	8
371	1
372	6
374	7
376	3
377	3
378	2
379	2
380	3
382	1
383	3
384	5
385	3
386	5
387	2
388	2
389	2
390	4
391	4
393	1
394	3
396	4
397	7
398	3
399	1
401	1
402	4
403	1
404	1
405	4
406	4
407	2
408	3
409	3
410	3
411	3
412	1
413	1
414	3
415	2
416	3
417	2
418	1
421	1
422	1
423	1
424	2
425	2
426	7
427	4
428	2
429	2
430	3
431	2
432	2
433	1
434	4
435	1
436	2
437	3
438	2
440	4
441	4
442	2
443	1
444	1
445	1
446	1
447	3
448	1
450	5
451	2
452	6
454	1
455	2
456	2
457	1
458	1
459	4
460	1
461	6
462	1
463	1
464	1
465	2
466	3
467	4
468	1
469	2
470	2
471	2
472	1
473	4
474	2
475	2
476	4
477	2
478	1
479	2
480	3
481	1
482	1
484	2
485	3
486	1
487	2
488	4
489	1
490	1
491	1
492	2
493	3
494	2
495	2
496	2
497	1
499	1
500	2
501	4
502	1
503	2
504	2
506	1
507	4
508	1
510	1
511	1
512	1
516	1
517	2
518	1
519	1
520	1
522	1
523	2
525	1
527	1
530	2
531	4
534	2
538	2
540	3
541	1
542	2
544	1
545	2
546	2
547	1
549	1
554	1
555	1
557	1
559	1
561	2
562	1
563	2
564	1
565	1
568	1
572	2
573	2
574	1
575	2
576	3
577	2
581	1
583	2
585	1
586	2
591	1
597	2
598	2
600	3
603	1
604	1
605	2
606	1
607	1
608	1
609	1
610	1
611	1
612	2
613	1
616	1
618	1
620	2
622	1
625	1
626	2
627	1
629	2
630	1
631	1
632	1
642	2
644	1
645	1
648	1
649	2
651	1
652	1
653	1
654	1
659	1
661	1
670	2
672	1
675	1
679	1
680	2
682	1
684	1
685	1
689	1
692	1
697	1
698	2
699	1
702	1
705	2
706	1
708	2
710	1
713	1
714	2
717	1
722	1
725	1
730	1
731	1
732	1
733	1
734	1
735	1
737	2
738	1
741	1
744	1
753	1
755	1
756	1
758	1
761	1
768	2
781	1
785	1
787	1
789	1
794	1
797	1
820	2
825	1
828	2
844	1
847	2
857	1
863	1
878	1
882	1
883	1
893	1
894	1
904	1
910	1
916	1
917	1
924	1
931	1
934	1
946	1
970	1
971	1
998	1
1002	1
1007	1
1014	2
1028	1
1031	1
1046	1
1047	1
1051	1
1055	1
1058	1
1071	1
1083	1
1086	2
1094	1
1098	1
1113	1
1134	1
1141	1
1143	1
1166	1
1177	1
1194	1
1198	1
1200	1
1222	1
1237	1
1270	1
1272	1
1291	1
1316	1
1347	1
1357	1
1394	1
1397	1
1415	1
1422	1
1488	1
1526	1
1539	1
1573	1
1580	1
1582	1
1586	1
1651	1
1684	1
1782	1
1953	1
2066	1
2209	1
2381	1
2389	1
2401	1
2407	1
2634	1
2808	1
3010	1
3019	1
4022	1
5807	1
7371	1
23743	1
620432	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
._._......._..._....___._...._.__....__._._.._.._.._...__....__...___.._
.._..._...._....__.._.__......____.____.__.__..._._._.._...._.....__..._
......_._...
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]