Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/d08e67d90729dde14e85deda2ab47c/tih_rna_sample_00097_23H5VFLT4_s12.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/b6ce4ff6ad5505a3bc4c2513a84df2/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/b6ce4ff6ad5505a3bc4c2513a84df2/.command.run ==> STAGING COMPLETE (3 inputs) PAIRED_END_BAM_INPUT Processed 1000000 records Processed 2000000 records Processed 3000000 records Processed 4000000 records Processed 5000000 records Processed 6000000 records Processed 7000000 records Processed 8000000 records Processed 9000000 records Processed 10000000 records Processed 11000000 records Processed 12000000 records Processed 13000000 records Processed 14000000 records Processed 15000000 records Processed 16000000 records Processed 17000000 records Processed 18000000 records Processed 19000000 records Processed 20000000 records Processed 21000000 records 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Processed 59000000 records Processed 60000000 records Processed 61000000 records Processed 62000000 records Processed 63000000 records Processed 64000000 records Processed 65000000 records Processed 66000000 records Processed 67000000 records Processed 68000000 records Processed 69000000 records Processed 70000000 records Processed 71000000 records Processed 72000000 records Processed 73000000 records Processed 74000000 records Processed 75000000 records Processed 76000000 records Processed 77000000 records Processed 78000000 records Processed 79000000 records Processed 80000000 records Processed 81000000 records Processed 82000000 records Processed 83000000 records Processed 84000000 records Processed 85000000 records Processed 86000000 records Processed 87000000 records Processed 88000000 records Processed 89000000 records Processed 90000000 records Processed 91000000 records Processed 92000000 records Processed 93000000 records Processed 94000000 records Processed 95000000 records Processed 96000000 records Processed 97000000 records Processed 98000000 records Processed 99000000 records Processed 100000000 records Processed 101000000 records Processed 102000000 records Processed 103000000 records Processed 104000000 records Processed 105000000 records Processed 106000000 records Processed 107000000 records Processed 108000000 records Processed 109000000 records Processed 110000000 records Processed 111000000 records Processed 112000000 records Processed 113000000 records Processed 114000000 records Processed 115000000 records Processed 116000000 records Processed 117000000 records Processed 118000000 records Processed 119000000 records Processed 120000000 records Processed 121000000 records Processed 122000000 records Processed 123000000 records Processed 124000000 records Processed 125000000 records Processed 126000000 records Processed 127000000 records Processed 128000000 records Processed 129000000 records Processed 130000000 records Processed 131000000 records Processed 132000000 records Processed 133000000 records Processed 134000000 records Processed 135000000 records Processed 136000000 records Processed 137000000 records Processed 138000000 records Processed 139000000 records Processed 140000000 records Processed 141000000 records Processed 142000000 records Processed 143000000 records Processed 144000000 records Processed 145000000 records Processed 146000000 records Processed 147000000 records Processed 148000000 records Processed 149000000 records Processed 150000000 records Processed 151000000 records Processed 152000000 records Processed 153000000 records Processed 154000000 records Processed 155000000 records Processed 156000000 records Processed 157000000 records Processed 158000000 records Processed 159000000 records Processed 160000000 records Processed 161000000 records Processed 162000000 records Processed 163000000 records Processed 164000000 records Processed 165000000 records Processed 166000000 records Processed 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Processed 203000000 records Processed 204000000 records Processed 205000000 records Processed 206000000 records Processed 207000000 records Processed 208000000 records Processed 209000000 records Processed 210000000 records Processed 211000000 records Processed 212000000 records Processed 213000000 records Processed 214000000 records Processed 215000000 records Processed 216000000 records Processed 217000000 records Processed 218000000 records Processed 219000000 records Processed 220000000 records Processed 221000000 records Processed 222000000 records Processed 223000000 records Processed 224000000 records Processed 225000000 records Processed 226000000 records Processed 227000000 records Processed 228000000 records Processed 229000000 records Processed 230000000 records Processed 231000000 records Processed 232000000 records Processed 233000000 records Processed 234000000 records Processed 235000000 records Processed 236000000 records Processed 237000000 records Processed 238000000 records Processed 239000000 records Processed 240000000 records Processed 241000000 records Processed 242000000 records Processed 243000000 records Processed 244000000 records Processed 245000000 records Processed 246000000 records Processed 247000000 records Processed 248000000 records Processed 249000000 records Processed 250000000 records Processed 251000000 records Processed 252000000 records Processed 253000000 records Processed 254000000 records Processed 255000000 records Processed 256000000 records Processed 257000000 records Processed 258000000 records Processed 259000000 records Processed 260000000 records Processed 261000000 records Processed 262000000 records Processed 263000000 records Processed 264000000 records Processed 265000000 records Processed 266000000 records Processed 267000000 records Processed 268000000 records Processed 269000000 records Processed 270000000 records Processed 271000000 records Processed 272000000 records Processed 273000000 records Processed 274000000 records Processed 275000000 records Processed 276000000 records Processed 277000000 records Processed 278000000 records Processed 279000000 records Processed 280000000 records Processed 281000000 records Processed 282000000 records Processed 283000000 records Processed 284000000 records Processed 285000000 records Processed 286000000 records Processed 287000000 records Processed 288000000 records Processed 289000000 records Processed 290000000 records Processed 291000000 records Processed 292000000 records Processed 293000000 records Processed 294000000 records Processed 295000000 records Processed 296000000 records Processed 297000000 records Processed 298000000 records Processed 299000000 records Processed 300000000 records Processed 301000000 records Processed 302000000 records Processed 303000000 records Processed 304000000 records Processed 305000000 records Processed 306000000 records Processed 307000000 records Processed 308000000 records Processed 309000000 records Processed 310000000 records Processed 311000000 records Processed 312000000 records Processed 313000000 records Processed 314000000 records Processed 315000000 records Processed 316000000 records Processed 317000000 records Processed 318000000 records Processed 319000000 records Processed 320000000 records Processed 321000000 records Processed 322000000 records Processed 323000000 records Processed 324000000 records Processed 325000000 records Processed 326000000 records Processed 327000000 records Processed 328000000 records Processed 329000000 records Processed 330000000 records Processed 331000000 records Processed 332000000 records Processed 333000000 records Processed 334000000 records Processed 335000000 records Processed 336000000 records Processed 337000000 records Processed 338000000 records Processed 339000000 records Processed 340000000 records Processed 341000000 records Processed 342000000 records Processed 343000000 records Processed 344000000 records Processed 345000000 records Processed 346000000 records Processed 347000000 records Processed 348000000 records Processed 349000000 records Processed 350000000 records Processed 351000000 records Processed 352000000 records Processed 353000000 records Processed 354000000 records Processed 355000000 records Processed 356000000 records Processed 357000000 records Processed 358000000 records Processed 359000000 records Processed 360000000 records Processed 361000000 records Processed 362000000 records Processed 363000000 records Processed 364000000 records Processed 365000000 records Processed 366000000 records Processed 367000000 records Processed 368000000 records Processed 369000000 records Processed 370000000 records Processed 371000000 records Processed 372000000 records Processed 373000000 records Processed 374000000 records Processed 375000000 records Processed 376000000 records Processed 377000000 records Processed 378000000 records Processed 379000000 records Processed 380000000 records Processed 381000000 records Processed 382000000 records Processed 383000000 records Processed 384000000 records Processed 385000000 records Processed 386000000 records Processed 387000000 records Processed 388000000 records Processed 389000000 records Processed 390000000 records Processed 391000000 records Processed 392000000 records Processed 393000000 records Processed 394000000 records Processed 395000000 records Processed 396000000 records Processed 397000000 records Processed 398000000 records Processed 399000000 records Processed 400000000 records Processed 401000000 records Processed 402000000 records Processed 403000000 records Processed 404000000 records Processed 405000000 records Processed 406000000 records Processed 407000000 records Processed 408000000 records Processed 409000000 records Processed 410000000 records Processed 411000000 records Processed 412000000 records Processed 413000000 records Processed 414000000 records Processed 415000000 records Processed 416000000 records Processed 417000000 records Processed 418000000 records Processed 419000000 records Processed 420000000 records Processed 421000000 records Processed 422000000 records Processed 423000000 records Processed 424000000 records Processed 425000000 records Processed 426000000 records Processed 427000000 records Processed 428000000 records Processed 429000000 records Processed 430000000 records Processed 431000000 records Processed 432000000 records Processed 433000000 records Processed 434000000 records Processed 435000000 records Processed 436000000 records Processed 437000000 records Processed 438000000 records Processed 439000000 records Processed 440000000 records Processed 441000000 records Processed 442000000 records Processed 443000000 records Processed 444000000 records Processed 445000000 records Processed 446000000 records Processed 447000000 records Processed 448000000 records Processed 449000000 records Processed 450000000 records Processed 451000000 records Processed 452000000 records Processed 453000000 records Processed 454000000 records Processed 455000000 records Processed 456000000 records Processed 457000000 records Processed 458000000 records Processed 459000000 records Processed 460000000 records Processed 461000000 records Processed 462000000 records Processed 463000000 records Processed 464000000 records Processed 465000000 records Processed 466000000 records Processed 467000000 records Processed 468000000 records Processed 469000000 records Processed 470000000 records Processed 471000000 records Processed 472000000 records Processed 473000000 records Processed 474000000 records Processed 475000000 records Processed 476000000 records Processed 477000000 records Processed 478000000 records Processed 479000000 records Processed 480000000 records Processed 481000000 records Processed 482000000 records Processed 483000000 records Processed 484000000 records Processed 485000000 records Processed 486000000 records Processed 487000000 records Processed 488000000 records Processed 489000000 records Processed 490000000 records Processed 491000000 records Processed 492000000 records Processed 493000000 records Processed 494000000 records Processed 495000000 records Processed 496000000 records Processed 497000000 records Processed 498000000 records Processed 499000000 records Processed 500000000 records Processed 501000000 records Processed 502000000 records Processed 503000000 records Processed 504000000 records Processed 505000000 records Processed 506000000 records Processed 507000000 records Processed 508000000 records Processed 509000000 records Processed 510000000 records Processed 511000000 records Processed 512000000 records Processed 513000000 records Processed 514000000 records Processed 515000000 records Processed 516000000 records Processed 517000000 records Processed 518000000 records Processed 519000000 records Processed 520000000 records Processed 521000000 records Processed 522000000 records Processed 523000000 records Processed 524000000 records Processed 525000000 records Processed 526000000 records Processed 527000000 records Processed 528000000 records Processed 529000000 records Processed 530000000 records Processed 531000000 records Processed 532000000 records Processed 533000000 records Processed 534000000 records Processed 535000000 records Processed 536000000 records Processed 537000000 records Processed 538000000 records Processed 539000000 records Processed 540000000 records Processed 541000000 records Processed 542000000 records Processed 543000000 records Processed 544000000 records Processed 545000000 records Processed 546000000 records Processed 547000000 records Processed 548000000 records Processed 549000000 records Processed 550000000 records Processed 551000000 records Processed 552000000 records Processed 553000000 records Processed 554000000 records Processed 555000000 records Processed 556000000 records Processed 557000000 records Processed 558000000 records Processed 559000000 records Processed 560000000 records Processed 561000000 records Processed 562000000 records Processed 563000000 records Processed 564000000 records Processed 565000000 records Processed 566000000 records Processed 567000000 records Processed 568000000 records Processed 569000000 records Processed 570000000 records Processed 571000000 records Processed 572000000 records Processed 573000000 records Processed 574000000 records Processed 575000000 records Processed 576000000 records Processed 577000000 records Processed 578000000 records Processed 579000000 records Processed 580000000 records Processed 581000000 records Processed 582000000 records Processed 583000000 records Processed 584000000 records Processed 585000000 records Processed 586000000 records Processed 587000000 records Processed 588000000 records Processed 589000000 records Processed 590000000 records Processed 591000000 records Processed 592000000 records Processed 593000000 records Processed 594000000 records paired = 295282283 unpaired = 3742257 MERGED PAIRED END READS = 295282283 MATES PROCESSED = 594306823 TOTAL READS = 299024540 DISTINCT READS = 1.41949e+08 DISTINCT COUNTS = 976 MAX COUNT = 342265 COUNTS OF 1 = 8.14093e+07 MAX TERMS = 100 OBSERVED COUNTS (342266) 1 81409331 2 31041674 3 13390101 4 6375553 5 3323689 6 1882526 7 1148038 8 748488 9 514319 10 370708 11 276481 12 212397 13 166861 14 134253 15 109704 16 90977 17 76611 18 65213 19 55443 20 48164 21 42048 22 36618 23 32672 24 28803 25 25644 26 22898 27 20364 28 18674 29 16879 30 15542 31 14105 32 12912 33 11805 34 11062 35 10063 36 9235 37 8712 38 7987 39 7486 40 6799 41 6350 42 5983 43 5674 44 5432 45 4975 46 4703 47 4455 48 4191 49 3982 50 3756 51 3541 52 3358 53 3164 54 3046 55 2826 56 2704 57 2522 58 2388 59 2288 60 2314 61 2166 62 2051 63 1941 64 1901 65 1756 66 1724 67 1650 68 1573 69 1500 70 1403 71 1440 72 1351 73 1297 74 1239 75 1169 76 1139 77 1168 78 1015 79 1002 80 996 81 983 82 962 83 920 84 847 85 850 86 753 87 760 88 762 89 700 90 680 91 693 92 661 93 652 94 575 95 600 96 572 97 577 98 540 99 576 100 510 101 497 102 474 103 489 104 477 105 486 106 445 107 412 108 441 109 421 110 437 111 363 112 376 113 389 114 370 115 344 116 334 117 320 118 322 119 308 120 294 121 292 122 335 123 304 124 295 125 277 126 253 127 293 128 264 129 237 130 253 131 236 132 218 133 199 134 218 135 204 136 209 137 189 138 186 139 182 140 201 141 221 142 206 143 179 144 166 145 181 146 184 147 178 148 189 149 174 150 168 151 158 152 169 153 124 154 124 155 155 156 144 157 157 158 119 159 140 160 139 161 129 162 127 163 120 164 111 165 103 166 119 167 118 168 120 169 88 170 106 171 120 172 103 173 109 174 98 175 99 176 106 177 97 178 92 179 102 180 98 181 97 182 100 183 105 184 91 185 94 186 74 187 78 188 76 189 77 190 72 191 77 192 70 193 66 194 92 195 71 196 87 197 62 198 68 199 50 200 74 201 67 202 65 203 75 204 65 205 53 206 62 207 57 208 60 209 48 210 56 211 56 212 60 213 61 214 67 215 72 216 54 217 54 218 56 219 70 220 53 221 45 222 49 223 43 224 47 225 49 226 44 227 53 228 49 229 45 230 55 231 42 232 41 233 45 234 45 235 40 236 51 237 39 238 41 239 42 240 31 241 48 242 30 243 40 244 41 245 34 246 35 247 48 248 39 249 30 250 30 251 35 252 33 253 33 254 36 255 28 256 33 257 30 258 33 259 21 260 31 261 35 262 30 263 28 264 24 265 26 266 26 267 28 268 27 269 18 270 26 271 27 272 24 273 30 274 32 275 25 276 33 277 25 278 31 279 22 280 26 281 22 282 23 283 23 284 24 285 19 286 29 287 23 288 27 289 24 290 26 291 25 292 19 293 30 294 20 295 30 296 24 297 25 298 20 299 12 300 18 301 20 302 28 303 22 304 19 305 29 306 14 307 26 308 20 309 19 310 10 311 14 312 25 313 10 314 15 315 17 316 14 317 21 318 11 319 16 320 8 321 18 322 22 323 15 324 16 325 15 326 21 327 26 328 14 329 15 330 11 331 11 332 14 333 11 334 11 335 20 336 17 337 20 338 15 339 16 340 9 341 15 342 19 343 24 344 17 345 9 346 14 347 12 348 16 349 10 350 16 351 13 352 17 353 16 354 8 355 8 356 14 357 13 358 14 359 14 360 10 361 13 362 8 363 18 364 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5 527 5 528 4 529 4 530 3 531 3 532 4 533 2 534 2 535 4 536 2 537 1 538 4 539 4 540 4 541 2 542 4 543 5 544 2 545 1 546 2 547 2 548 3 549 5 550 2 551 4 552 2 553 3 554 4 555 1 556 6 557 4 558 5 559 3 560 2 561 1 562 2 563 1 565 4 566 1 567 2 568 1 569 3 570 4 572 3 573 1 574 2 575 1 576 2 577 4 578 2 580 6 581 4 582 4 583 2 584 4 586 2 587 3 589 2 590 1 591 5 593 1 594 3 595 3 596 4 597 2 598 4 599 5 601 5 602 2 603 2 605 1 606 5 608 1 609 3 610 4 611 3 612 5 613 4 614 1 615 1 616 2 617 1 618 2 619 4 620 2 621 1 622 2 623 4 624 3 626 2 627 3 628 1 629 1 632 4 633 1 634 1 635 1 636 2 637 4 638 2 639 3 640 1 641 4 643 2 644 2 646 4 647 3 648 4 649 2 650 2 651 6 652 3 653 3 655 1 657 1 658 1 659 2 660 5 661 2 662 2 663 2 664 1 665 3 666 1 667 2 669 2 672 4 675 6 676 1 677 2 678 1 679 3 681 1 685 1 687 2 688 1 689 1 690 1 691 5 692 2 693 2 694 1 696 1 697 3 698 1 699 3 700 1 701 1 702 2 704 2 705 1 706 1 708 4 710 1 711 2 712 2 713 1 714 1 715 1 716 1 717 1 718 1 719 3 720 2 722 2 725 1 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1065 1 1076 1 1080 1 1083 2 1086 1 1088 1 1089 1 1092 1 1093 1 1097 1 1100 1 1103 1 1104 2 1115 1 1116 1 1119 1 1121 1 1131 2 1136 1 1140 1 1146 1 1147 1 1150 1 1155 1 1157 2 1165 1 1166 1 1172 3 1175 1 1181 2 1185 1 1190 1 1192 1 1199 1 1206 1 1214 1 1224 2 1227 1 1228 1 1240 2 1248 1 1251 1 1258 2 1261 1 1274 1 1276 1 1282 1 1287 1 1288 1 1291 1 1296 1 1299 1 1304 1 1305 1 1320 1 1322 1 1354 1 1358 1 1359 1 1360 1 1373 1 1381 1 1396 1 1417 1 1422 1 1426 1 1427 1 1437 1 1439 2 1441 1 1442 1 1443 1 1449 1 1451 1 1456 1 1481 1 1496 1 1513 1 1544 1 1545 1 1574 1 1591 1 1621 1 1671 1 1677 1 1715 1 1717 1 1727 1 1733 1 1756 1 1780 1 1800 1 1813 1 1817 1 1850 1 1892 1 1912 1 1925 1 1930 1 1953 1 1961 1 2077 1 2125 1 2170 1 2173 1 2182 1 2192 1 2328 1 2567 1 2600 1 2644 1 2715 1 2777 1 2958 1 3072 1 3405 1 3509 1 4039 1 4883 1 5047 1 9897 1 342265 1 [ESTIMATING YIELD CURVE] [BOOTSTRAPPING HISTOGRAM] .._..._._................._........................._..._.__....__....._ 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[COMPUTING CONFIDENCE INTERVALS] [WRITING OUTPUT]