File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/8bbd285fab9ccbfb8e429112096f23/.command.log
Size
1.2 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (NTC_0001_0001_23H5VFLT4_s15)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/89210853ee884f1669710f868c6b9f/NTC_0001_0001_23H5VFLT4_s15.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/9055d4b0da3d2fb2a1c6cf662c7616/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/8bbd285fab9ccbfb8e429112096f23/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/8bbd285fab9ccbfb8e429112096f23/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/0caad1614725c4cce40a4864004506/NTC_0001_0001_23H5VFLT4_s15.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 24
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	24
Known Splicing Events:	2
Partial Novel Splicing Events:	0
Novel Splicing Events:	22
Filtered Splicing Events:	0

Total splicing  Junctions:	10
Known Splicing Junctions:	1
Partial Novel Splicing Junctions:	0
Novel Splicing Junctions:	9

===================================================================
Create BED file ...
Create Interact file ...