Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/e43f0a9041cb491576a1982bedd2fe/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/bb2c44ace0ead90c965921f3266c26/tih_rna_sample_00096_23H5VFLT4_s11.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/e43f0a9041cb491576a1982bedd2fe/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory