Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/a780b1e2c2af60fec124b18ddaf373/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/a780b1e2c2af60fec124b18ddaf373/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/5fbc51a805066aeb16dbc3810c27aa/GM24385_0001_RNA_0001_23H5VFLT4_s16.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT GM24385_0001_RNA_0001_23H5VFLT4_s16.Aligned.sortedByCoord.out.bam --OUTPUT GM24385_0001_RNA_0001_23H5VFLT4_s16.md.bam --METRICS_FILE GM24385_0001_RNA_0001_23H5VFLT4_s16.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:20:41.349 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:20:41 GMT 2026] MarkDuplicates --INPUT GM24385_0001_RNA_0001_23H5VFLT4_s16.Aligned.sortedByCoord.out.bam --OUTPUT GM24385_0001_RNA_0001_23H5VFLT4_s16.md.bam --METRICS_FILE GM24385_0001_RNA_0001_23H5VFLT4_s16.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:20:41 GMT 2026] Executing as ?@nf-17a780b1e2c2af60fec124b18ddaf373-a2be2-xllfk on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:20:41 MarkDuplicates Start of doWork freeMemory: 105492744; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:20:41 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:20:41 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:20:45 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,211,716
INFO 2026-06-08 08:20:45 MarkDuplicates Tracking 2099 as yet unmatched pairs. 644 records in RAM.
INFO 2026-06-08 08:20:47 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,703,549
INFO 2026-06-08 08:20:47 MarkDuplicates Tracking 3845 as yet unmatched pairs. 643 records in RAM.
INFO 2026-06-08 08:20:50 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:6,096,682
INFO 2026-06-08 08:20:50 MarkDuplicates Tracking 6095 as yet unmatched pairs. 1324 records in RAM.
INFO 2026-06-08 08:20:52 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:8,867,225
INFO 2026-06-08 08:20:52 MarkDuplicates Tracking 6814 as yet unmatched pairs. 697 records in RAM.
INFO 2026-06-08 08:20:53 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:11,237,879
INFO 2026-06-08 08:20:53 MarkDuplicates Tracking 8054 as yet unmatched pairs. 653 records in RAM.
INFO 2026-06-08 08:20:56 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:15,411,944
INFO 2026-06-08 08:20:56 MarkDuplicates Tracking 8897 as yet unmatched pairs. 97 records in RAM.
INFO 2026-06-08 08:20:57 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:16,666,815
INFO 2026-06-08 08:20:57 MarkDuplicates Tracking 10012 as yet unmatched pairs. 100 records in RAM.
INFO 2026-06-08 08:20:59 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 2s. Last read position: chr1:19,307,069
INFO 2026-06-08 08:20:59 MarkDuplicates Tracking 11468 as yet unmatched pairs. 495 records in RAM.
INFO 2026-06-08 08:21:01 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:23,019,662
INFO 2026-06-08 08:21:01 MarkDuplicates Tracking 13414 as yet unmatched pairs. 1241 records in RAM.
INFO 2026-06-08 08:21:03 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:24,929,681
INFO 2026-06-08 08:21:03 MarkDuplicates Tracking 14488 as yet unmatched pairs. 994 records in RAM.
INFO 2026-06-08 08:21:05 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:26,780,531
INFO 2026-06-08 08:21:05 MarkDuplicates Tracking 15373 as yet unmatched pairs. 550 records in RAM.
INFO 2026-06-08 08:21:07 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:28,150,400
INFO 2026-06-08 08:21:07 MarkDuplicates Tracking 16824 as yet unmatched pairs. 537 records in RAM.
INFO 2026-06-08 08:21:09 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:31,293,228
INFO 2026-06-08 08:21:09 MarkDuplicates Tracking 18053 as yet unmatched pairs. 569 records in RAM.
INFO 2026-06-08 08:21:11 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:32,679,639
INFO 2026-06-08 08:21:11 MarkDuplicates Tracking 19427 as yet unmatched pairs. 669 records in RAM.
INFO 2026-06-08 08:21:13 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:35,558,101
INFO 2026-06-08 08:21:13 MarkDuplicates Tracking 20528 as yet unmatched pairs. 318 records in RAM.
INFO 2026-06-08 08:21:15 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:38,851,614
INFO 2026-06-08 08:21:15 MarkDuplicates Tracking 21764 as yet unmatched pairs. 271 records in RAM.
INFO 2026-06-08 08:21:16 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:40,078,560
INFO 2026-06-08 08:21:16 MarkDuplicates Tracking 23038 as yet unmatched pairs. 448 records in RAM.
INFO 2026-06-08 08:21:18 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:42,817,163
INFO 2026-06-08 08:21:18 MarkDuplicates Tracking 24119 as yet unmatched pairs. 208 records in RAM.
INFO 2026-06-08 08:21:19 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:44,778,002
INFO 2026-06-08 08:21:19 MarkDuplicates Tracking 26678 as yet unmatched pairs. 1524 records in RAM.
INFO 2026-06-08 08:21:21 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:46,683,343
INFO 2026-06-08 08:21:21 MarkDuplicates Tracking 27163 as yet unmatched pairs. 643 records in RAM.
INFO 2026-06-08 08:21:23 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:52,602,490
INFO 2026-06-08 08:21:23 MarkDuplicates Tracking 27927 as yet unmatched pairs. 265 records in RAM.
INFO 2026-06-08 08:21:24 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:64,835,485
INFO 2026-06-08 08:21:24 MarkDuplicates Tracking 29475 as yet unmatched pairs. 587 records in RAM.
INFO 2026-06-08 08:21:26 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:77,965,091
INFO 2026-06-08 08:21:26 MarkDuplicates Tracking 30611 as yet unmatched pairs. 674 records in RAM.
INFO 2026-06-08 08:21:28 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:88,805,620
INFO 2026-06-08 08:21:28 MarkDuplicates Tracking 31337 as yet unmatched pairs. 306 records in RAM.
INFO 2026-06-08 08:21:30 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:99,880,725
INFO 2026-06-08 08:21:30 MarkDuplicates Tracking 32548 as yet unmatched pairs. 436 records in RAM.
INFO 2026-06-08 08:21:32 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:110,211,803
INFO 2026-06-08 08:21:32 MarkDuplicates Tracking 33306 as yet unmatched pairs. 250 records in RAM.
INFO 2026-06-08 08:21:33 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:112,618,882
INFO 2026-06-08 08:21:33 MarkDuplicates Tracking 34429 as yet unmatched pairs. 315 records in RAM.
INFO 2026-06-08 08:21:35 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:114,733,732
INFO 2026-06-08 08:21:35 MarkDuplicates Tracking 36394 as yet unmatched pairs. 1104 records in RAM.
INFO 2026-06-08 08:21:36 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:120,442,882
INFO 2026-06-08 08:21:36 MarkDuplicates Tracking 36643 as yet unmatched pairs. 296 records in RAM.
INFO 2026-06-08 08:21:38 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:146,106,572
INFO 2026-06-08 08:21:38 MarkDuplicates Tracking 37374 as yet unmatched pairs. 261 records in RAM.
INFO 2026-06-08 08:21:39 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:149,082,064
INFO 2026-06-08 08:21:39 MarkDuplicates Tracking 38103 as yet unmatched pairs. 483 records in RAM.
INFO 2026-06-08 08:21:40 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:150,150,197
INFO 2026-06-08 08:21:40 MarkDuplicates Tracking 39001 as yet unmatched pairs. 631 records in RAM.
INFO 2026-06-08 08:21:42 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:150,968,440
INFO 2026-06-08 08:21:42 MarkDuplicates Tracking 39943 as yet unmatched pairs. 489 records in RAM.
INFO 2026-06-08 08:21:43 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:153,747,330
INFO 2026-06-08 08:21:43 MarkDuplicates Tracking 41200 as yet unmatched pairs. 603 records in RAM.
INFO 2026-06-08 08:21:45 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:154,170,685
INFO 2026-06-08 08:21:45 MarkDuplicates Tracking 49516 as yet unmatched pairs. 7647 records in RAM.
INFO 2026-06-08 08:21:47 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 2s. Last read position: chr1:154,601,481
INFO 2026-06-08 08:21:47 MarkDuplicates Tracking 44353 as yet unmatched pairs. 1451 records in RAM.
INFO 2026-06-08 08:21:49 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:155,318,603
INFO 2026-06-08 08:21:49 MarkDuplicates Tracking 44644 as yet unmatched pairs. 427 records in RAM.
INFO 2026-06-08 08:21:50 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:155,976,643
INFO 2026-06-08 08:21:50 MarkDuplicates Tracking 45533 as yet unmatched pairs. 212 records in RAM.
INFO 2026-06-08 08:21:52 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:156,652,566
INFO 2026-06-08 08:21:52 MarkDuplicates Tracking 46859 as yet unmatched pairs. 189 records in RAM.
INFO 2026-06-08 08:21:53 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:160,292,011
INFO 2026-06-08 08:21:53 MarkDuplicates Tracking 48680 as yet unmatched pairs. 920 records in RAM.
INFO 2026-06-08 08:21:55 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:161,048,125
INFO 2026-06-08 08:21:55 MarkDuplicates Tracking 51271 as yet unmatched pairs. 2524 records in RAM.
INFO 2026-06-08 08:21:56 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:166,277,364
INFO 2026-06-08 08:21:56 MarkDuplicates Tracking 49895 as yet unmatched pairs. 106 records in RAM.
INFO 2026-06-08 08:21:58 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:171,550,176
INFO 2026-06-08 08:21:58 MarkDuplicates Tracking 51392 as yet unmatched pairs. 519 records in RAM.
INFO 2026-06-08 08:21:59 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:176,085,873
INFO 2026-06-08 08:21:59 MarkDuplicates Tracking 52550 as yet unmatched pairs. 537 records in RAM.
INFO 2026-06-08 08:22:00 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:183,023,973
INFO 2026-06-08 08:22:00 MarkDuplicates Tracking 53929 as yet unmatched pairs. 461 records in RAM.
INFO 2026-06-08 08:22:02 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:186,347,454
INFO 2026-06-08 08:22:02 MarkDuplicates Tracking 55107 as yet unmatched pairs. 774 records in RAM.
INFO 2026-06-08 08:22:04 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:200,981,069
INFO 2026-06-08 08:22:04 MarkDuplicates Tracking 55922 as yet unmatched pairs. 636 records in RAM.
INFO 2026-06-08 08:22:05 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:203,851,105
INFO 2026-06-08 08:22:05 MarkDuplicates Tracking 58639 as yet unmatched pairs. 2097 records in RAM.
INFO 2026-06-08 08:22:07 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:206,770,997
INFO 2026-06-08 08:22:07 MarkDuplicates Tracking 58587 as yet unmatched pairs. 893 records in RAM.
INFO 2026-06-08 08:22:09 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:213,008,278
INFO 2026-06-08 08:22:09 MarkDuplicates Tracking 59056 as yet unmatched pairs. 167 records in RAM.
INFO 2026-06-08 08:22:10 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:224,398,989
INFO 2026-06-08 08:22:10 MarkDuplicates Tracking 60329 as yet unmatched pairs. 467 records in RAM.
INFO 2026-06-08 08:22:12 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:227,254,124
INFO 2026-06-08 08:22:12 MarkDuplicates Tracking 61642 as yet unmatched pairs. 545 records in RAM.
INFO 2026-06-08 08:22:13 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:231,941,621
INFO 2026-06-08 08:22:13 MarkDuplicates Tracking 62991 as yet unmatched pairs. 56 records in RAM.
INFO 2026-06-08 08:22:15 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:236,572,730
INFO 2026-06-08 08:22:15 MarkDuplicates Tracking 64864 as yet unmatched pairs. 167 records in RAM.
INFO 2026-06-08 08:22:16 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:246,891,798
INFO 2026-06-08 08:22:16 MarkDuplicates Tracking 66103 as yet unmatched pairs. 276 records in RAM.
INFO 2026-06-08 08:22:18 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr2:8,826,986
INFO 2026-06-08 08:22:18 MarkDuplicates Tracking 67293 as yet unmatched pairs. 59495 records in RAM.
INFO 2026-06-08 08:22:20 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr2:20,033,129
INFO 2026-06-08 08:22:20 MarkDuplicates Tracking 68347 as yet unmatched pairs. 60378 records in RAM.
INFO 2026-06-08 08:22:21 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr2:24,861,905
INFO 2026-06-08 08:22:21 MarkDuplicates Tracking 69453 as yet unmatched pairs. 61387 records in RAM.
INFO 2026-06-08 08:22:23 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr2:27,315,054
INFO 2026-06-08 08:22:23 MarkDuplicates Tracking 70623 as yet unmatched pairs. 62437 records in RAM.
INFO 2026-06-08 08:22:24 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr2:32,251,239
INFO 2026-06-08 08:22:24 MarkDuplicates Tracking 71696 as yet unmatched pairs. 63367 records in RAM.
INFO 2026-06-08 08:22:26 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,263
INFO 2026-06-08 08:22:26 MarkDuplicates Tracking 111707 as yet unmatched pairs. 61702 records in RAM.
INFO 2026-06-08 08:22:28 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,363
INFO 2026-06-08 08:22:28 MarkDuplicates Tracking 606682 as yet unmatched pairs. 35699 records in RAM.
INFO 2026-06-08 08:22:29 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:22:29 MarkDuplicates Tracking 650117 as yet unmatched pairs. 33431 records in RAM.
INFO 2026-06-08 08:22:30 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr2:37,222,267
INFO 2026-06-08 08:22:30 MarkDuplicates Tracking 694512 as yet unmatched pairs. 30362 records in RAM.
INFO 2026-06-08 08:22:32 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:43,574,793
INFO 2026-06-08 08:22:32 MarkDuplicates Tracking 694273 as yet unmatched pairs. 30006 records in RAM.
INFO 2026-06-08 08:22:34 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:48,507,316
INFO 2026-06-08 08:22:34 MarkDuplicates Tracking 692945 as yet unmatched pairs. 28447 records in RAM.
INFO 2026-06-08 08:22:35 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr2:55,295,813
INFO 2026-06-08 08:22:35 MarkDuplicates Tracking 692587 as yet unmatched pairs. 27962 records in RAM.
INFO 2026-06-08 08:22:37 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr2:61,281,097
INFO 2026-06-08 08:22:37 MarkDuplicates Tracking 691624 as yet unmatched pairs. 26860 records in RAM.
INFO 2026-06-08 08:22:39 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:65,072,134
INFO 2026-06-08 08:22:39 MarkDuplicates Tracking 690953 as yet unmatched pairs. 25965 records in RAM.
INFO 2026-06-08 08:22:40 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:70,993,766
INFO 2026-06-08 08:22:40 MarkDuplicates Tracking 690035 as yet unmatched pairs. 24902 records in RAM.
INFO 2026-06-08 08:22:42 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:74,252,277
INFO 2026-06-08 08:22:42 MarkDuplicates Tracking 688958 as yet unmatched pairs. 23688 records in RAM.
INFO 2026-06-08 08:22:43 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:84,906,405
INFO 2026-06-08 08:22:43 MarkDuplicates Tracking 688424 as yet unmatched pairs. 23015 records in RAM.
INFO 2026-06-08 08:22:45 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:88,028,111
INFO 2026-06-08 08:22:45 MarkDuplicates Tracking 687279 as yet unmatched pairs. 21728 records in RAM.
INFO 2026-06-08 08:22:46 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:96,291,774
INFO 2026-06-08 08:22:46 MarkDuplicates Tracking 685897 as yet unmatched pairs. 20244 records in RAM.
INFO 2026-06-08 08:22:47 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:98,587,422
INFO 2026-06-08 08:22:47 MarkDuplicates Tracking 684596 as yet unmatched pairs. 18811 records in RAM.
INFO 2026-06-08 08:22:49 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:108,754,916
INFO 2026-06-08 08:22:49 MarkDuplicates Tracking 684419 as yet unmatched pairs. 18505 records in RAM.
INFO 2026-06-08 08:22:51 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:112,573,634
INFO 2026-06-08 08:22:51 MarkDuplicates Tracking 683157 as yet unmatched pairs. 17170 records in RAM.
INFO 2026-06-08 08:22:52 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:121,532,238
INFO 2026-06-08 08:22:52 MarkDuplicates Tracking 682735 as yet unmatched pairs. 16606 records in RAM.
INFO 2026-06-08 08:22:54 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:131,519,546
INFO 2026-06-08 08:22:54 MarkDuplicates Tracking 681346 as yet unmatched pairs. 15025 records in RAM.
INFO 2026-06-08 08:22:55 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:148,657,001
INFO 2026-06-08 08:22:55 MarkDuplicates Tracking 680793 as yet unmatched pairs. 14251 records in RAM.
INFO 2026-06-08 08:22:57 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:159,762,831
INFO 2026-06-08 08:22:57 MarkDuplicates Tracking 680115 as yet unmatched pairs. 13412 records in RAM.
INFO 2026-06-08 08:22:58 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:171,082,831
INFO 2026-06-08 08:22:58 MarkDuplicates Tracking 679923 as yet unmatched pairs. 13046 records in RAM.
INFO 2026-06-08 08:23:00 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:177,221,684
INFO 2026-06-08 08:23:00 MarkDuplicates Tracking 678687 as yet unmatched pairs. 11694 records in RAM.
INFO 2026-06-08 08:23:01 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:179,049,903
INFO 2026-06-08 08:23:01 MarkDuplicates Tracking 677845 as yet unmatched pairs. 10754 records in RAM.
INFO 2026-06-08 08:23:03 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:190,881,226
INFO 2026-06-08 08:23:03 MarkDuplicates Tracking 679280 as yet unmatched pairs. 12031 records in RAM.
INFO 2026-06-08 08:23:04 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:197,393,012
INFO 2026-06-08 08:23:04 MarkDuplicates Tracking 677247 as yet unmatched pairs. 9798 records in RAM.
INFO 2026-06-08 08:23:06 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:202,275,116
INFO 2026-06-08 08:23:06 MarkDuplicates Tracking 676005 as yet unmatched pairs. 8455 records in RAM.
INFO 2026-06-08 08:23:07 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:210,171,296
INFO 2026-06-08 08:23:07 MarkDuplicates Tracking 674719 as yet unmatched pairs. 6991 records in RAM.
INFO 2026-06-08 08:23:09 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:218,459,790
INFO 2026-06-08 08:23:09 MarkDuplicates Tracking 673922 as yet unmatched pairs. 6074 records in RAM.
INFO 2026-06-08 08:23:10 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:222,521,919
INFO 2026-06-08 08:23:10 MarkDuplicates Tracking 673609 as yet unmatched pairs. 5610 records in RAM.
INFO 2026-06-08 08:23:12 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:230,247,997
INFO 2026-06-08 08:23:12 MarkDuplicates Tracking 672221 as yet unmatched pairs. 3961 records in RAM.
INFO 2026-06-08 08:23:13 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:231,781,112
INFO 2026-06-08 08:23:13 MarkDuplicates Tracking 671533 as yet unmatched pairs. 3163 records in RAM.
INFO 2026-06-08 08:23:15 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:237,763,095
INFO 2026-06-08 08:23:15 MarkDuplicates Tracking 670494 as yet unmatched pairs. 1948 records in RAM.
INFO 2026-06-08 08:23:16 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:241,256,683
INFO 2026-06-08 08:23:16 MarkDuplicates Tracking 670370 as yet unmatched pairs. 1626 records in RAM.
INFO 2026-06-08 08:23:19 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 2s. Last read position: chr3:5,179,600
INFO 2026-06-08 08:23:19 MarkDuplicates Tracking 668441 as yet unmatched pairs. 30972 records in RAM.
INFO 2026-06-08 08:23:20 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr3:9,946,760
INFO 2026-06-08 08:23:20 MarkDuplicates Tracking 667224 as yet unmatched pairs. 29619 records in RAM.
INFO 2026-06-08 08:23:21 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr3:12,936,276
INFO 2026-06-08 08:23:21 MarkDuplicates Tracking 666557 as yet unmatched pairs. 28846 records in RAM.
INFO 2026-06-08 08:23:23 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr3:15,738,540
INFO 2026-06-08 08:23:23 MarkDuplicates Tracking 668529 as yet unmatched pairs. 30645 records in RAM.
INFO 2026-06-08 08:23:24 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr3:17,238,204
INFO 2026-06-08 08:23:24 MarkDuplicates Tracking 664698 as yet unmatched pairs. 26707 records in RAM.
INFO 2026-06-08 08:23:26 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr3:32,790,364
INFO 2026-06-08 08:23:26 MarkDuplicates Tracking 663705 as yet unmatched pairs. 25527 records in RAM.
INFO 2026-06-08 08:23:27 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr3:38,384,323
INFO 2026-06-08 08:23:27 MarkDuplicates Tracking 662626 as yet unmatched pairs. 24285 records in RAM.
INFO 2026-06-08 08:23:29 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr3:42,639,061
INFO 2026-06-08 08:23:29 MarkDuplicates Tracking 662230 as yet unmatched pairs. 23787 records in RAM.
INFO 2026-06-08 08:23:31 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 2s. Last read position: chr3:47,000,211
INFO 2026-06-08 08:23:31 MarkDuplicates Tracking 662155 as yet unmatched pairs. 23540 records in RAM.
INFO 2026-06-08 08:23:32 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr3:47,841,005
INFO 2026-06-08 08:23:32 MarkDuplicates Tracking 659859 as yet unmatched pairs. 21126 records in RAM.
INFO 2026-06-08 08:23:34 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr3:49,011,677
INFO 2026-06-08 08:23:34 MarkDuplicates Tracking 660368 as yet unmatched pairs. 21517 records in RAM.
INFO 2026-06-08 08:23:36 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr3:49,360,227
INFO 2026-06-08 08:23:36 MarkDuplicates Tracking 658939 as yet unmatched pairs. 19964 records in RAM.
INFO 2026-06-08 08:23:37 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr3:50,289,451
INFO 2026-06-08 08:23:37 MarkDuplicates Tracking 656999 as yet unmatched pairs. 17930 records in RAM.
INFO 2026-06-08 08:23:39 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr3:52,247,216
INFO 2026-06-08 08:23:39 MarkDuplicates Tracking 656036 as yet unmatched pairs. 16842 records in RAM.
INFO 2026-06-08 08:23:41 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 2s. Last read position: chr3:53,235,053
INFO 2026-06-08 08:23:41 MarkDuplicates Tracking 655013 as yet unmatched pairs. 15632 records in RAM.
INFO 2026-06-08 08:23:43 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr3:63,838,444
INFO 2026-06-08 08:23:43 MarkDuplicates Tracking 654687 as yet unmatched pairs. 15125 records in RAM.
INFO 2026-06-08 08:23:44 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr3:98,772,954
INFO 2026-06-08 08:23:44 MarkDuplicates Tracking 653122 as yet unmatched pairs. 13439 records in RAM.
INFO 2026-06-08 08:23:46 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr3:108,648,021
INFO 2026-06-08 08:23:46 MarkDuplicates Tracking 652545 as yet unmatched pairs. 12683 records in RAM.
INFO 2026-06-08 08:23:48 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr3:120,335,933
INFO 2026-06-08 08:23:48 MarkDuplicates Tracking 652287 as yet unmatched pairs. 12222 records in RAM.
INFO 2026-06-08 08:23:49 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr3:122,700,245
INFO 2026-06-08 08:23:49 MarkDuplicates Tracking 652314 as yet unmatched pairs. 12143 records in RAM.
INFO 2026-06-08 08:23:51 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr3:127,668,482
INFO 2026-06-08 08:23:51 MarkDuplicates Tracking 650112 as yet unmatched pairs. 9793 records in RAM.
INFO 2026-06-08 08:23:52 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr3:130,843,401
INFO 2026-06-08 08:23:52 MarkDuplicates Tracking 649152 as yet unmatched pairs. 8687 records in RAM.
INFO 2026-06-08 08:23:54 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr3:136,703,416
INFO 2026-06-08 08:23:54 MarkDuplicates Tracking 648306 as yet unmatched pairs. 7672 records in RAM.
INFO 2026-06-08 08:23:56 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr3:148,991,571
INFO 2026-06-08 08:23:56 MarkDuplicates Tracking 648041 as yet unmatched pairs. 7247 records in RAM.
INFO 2026-06-08 08:23:57 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr3:157,148,354
INFO 2026-06-08 08:23:57 MarkDuplicates Tracking 647159 as yet unmatched pairs. 6162 records in RAM.
INFO 2026-06-08 08:23:58 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr3:171,426,208
INFO 2026-06-08 08:23:58 MarkDuplicates Tracking 646365 as yet unmatched pairs. 5190 records in RAM.
INFO 2026-06-08 08:24:00 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:180,970,157
INFO 2026-06-08 08:24:00 MarkDuplicates Tracking 645783 as yet unmatched pairs. 4480 records in RAM.
INFO 2026-06-08 08:24:01 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr3:184,325,910
INFO 2026-06-08 08:24:01 MarkDuplicates Tracking 645070 as yet unmatched pairs. 3669 records in RAM.
INFO 2026-06-08 08:24:03 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:194,137,896
INFO 2026-06-08 08:24:03 MarkDuplicates Tracking 643655 as yet unmatched pairs. 2116 records in RAM.
INFO 2026-06-08 08:24:04 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:196,806,578
INFO 2026-06-08 08:24:04 MarkDuplicates Tracking 642739 as yet unmatched pairs. 1067 records in RAM.
INFO 2026-06-08 08:24:06 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr4:888,892
INFO 2026-06-08 08:24:06 MarkDuplicates Tracking 642208 as yet unmatched pairs. 18075 records in RAM.
INFO 2026-06-08 08:24:07 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr4:1,814,403
INFO 2026-06-08 08:24:07 MarkDuplicates Tracking 639949 as yet unmatched pairs. 15687 records in RAM.
INFO 2026-06-08 08:24:09 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr4:3,132,636
INFO 2026-06-08 08:24:09 MarkDuplicates Tracking 639097 as yet unmatched pairs. 14685 records in RAM.
INFO 2026-06-08 08:24:11 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr4:8,388,727
INFO 2026-06-08 08:24:11 MarkDuplicates Tracking 637668 as yet unmatched pairs. 13108 records in RAM.
INFO 2026-06-08 08:24:12 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr4:24,570,661
INFO 2026-06-08 08:24:12 MarkDuplicates Tracking 637371 as yet unmatched pairs. 12652 records in RAM.
INFO 2026-06-08 08:24:13 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr4:39,723,979
INFO 2026-06-08 08:24:13 MarkDuplicates Tracking 636047 as yet unmatched pairs. 11178 records in RAM.
INFO 2026-06-08 08:24:15 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr4:47,559,010
INFO 2026-06-08 08:24:15 MarkDuplicates Tracking 635135 as yet unmatched pairs. 10155 records in RAM.
INFO 2026-06-08 08:24:17 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr4:57,005,633
INFO 2026-06-08 08:24:17 MarkDuplicates Tracking 634478 as yet unmatched pairs. 9315 records in RAM.
INFO 2026-06-08 08:24:18 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr4:75,940,081
INFO 2026-06-08 08:24:18 MarkDuplicates Tracking 633690 as yet unmatched pairs. 8428 records in RAM.
INFO 2026-06-08 08:24:20 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr4:83,110,941
INFO 2026-06-08 08:24:20 MarkDuplicates Tracking 632563 as yet unmatched pairs. 7173 records in RAM.
INFO 2026-06-08 08:24:21 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr4:99,866,030
INFO 2026-06-08 08:24:21 MarkDuplicates Tracking 631764 as yet unmatched pairs. 6203 records in RAM.
INFO 2026-06-08 08:24:23 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr4:108,621,968
INFO 2026-06-08 08:24:23 MarkDuplicates Tracking 632811 as yet unmatched pairs. 7073 records in RAM.
INFO 2026-06-08 08:24:24 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr4:122,350,962
INFO 2026-06-08 08:24:24 MarkDuplicates Tracking 630321 as yet unmatched pairs. 4425 records in RAM.
INFO 2026-06-08 08:24:26 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr4:145,761,373
INFO 2026-06-08 08:24:26 MarkDuplicates Tracking 629436 as yet unmatched pairs. 3416 records in RAM.
INFO 2026-06-08 08:24:27 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr4:152,411,695
INFO 2026-06-08 08:24:27 MarkDuplicates Tracking 629531 as yet unmatched pairs. 3317 records in RAM.
INFO 2026-06-08 08:24:29 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr4:168,262,732
INFO 2026-06-08 08:24:29 MarkDuplicates Tracking 628153 as yet unmatched pairs. 1800 records in RAM.
INFO 2026-06-08 08:24:31 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr4:185,332,721
INFO 2026-06-08 08:24:31 MarkDuplicates Tracking 627052 as yet unmatched pairs. 498 records in RAM.
INFO 2026-06-08 08:24:33 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr5:1,616,214
INFO 2026-06-08 08:24:33 MarkDuplicates Tracking 625638 as yet unmatched pairs. 29496 records in RAM.
INFO 2026-06-08 08:24:35 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 2s. Last read position: chr5:14,286,924
INFO 2026-06-08 08:24:35 MarkDuplicates Tracking 627650 as yet unmatched pairs. 31336 records in RAM.
INFO 2026-06-08 08:24:36 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr5:14,471,413
INFO 2026-06-08 08:24:36 MarkDuplicates Tracking 625463 as yet unmatched pairs. 29066 records in RAM.
INFO 2026-06-08 08:24:38 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr5:32,585,689
INFO 2026-06-08 08:24:38 MarkDuplicates Tracking 623221 as yet unmatched pairs. 26724 records in RAM.
INFO 2026-06-08 08:24:39 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr5:41,801,050
INFO 2026-06-08 08:24:39 MarkDuplicates Tracking 621506 as yet unmatched pairs. 24882 records in RAM.
INFO 2026-06-08 08:24:41 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr5:61,531,664
INFO 2026-06-08 08:24:41 MarkDuplicates Tracking 620630 as yet unmatched pairs. 23822 records in RAM.
INFO 2026-06-08 08:24:43 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr5:70,049,657
INFO 2026-06-08 08:24:43 MarkDuplicates Tracking 620090 as yet unmatched pairs. 23151 records in RAM.
INFO 2026-06-08 08:24:44 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr5:73,508,884
INFO 2026-06-08 08:24:44 MarkDuplicates Tracking 619419 as yet unmatched pairs. 22413 records in RAM.
INFO 2026-06-08 08:24:45 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr5:80,894,285
INFO 2026-06-08 08:24:45 MarkDuplicates Tracking 618554 as yet unmatched pairs. 21401 records in RAM.
INFO 2026-06-08 08:24:47 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr5:95,523,257
INFO 2026-06-08 08:24:47 MarkDuplicates Tracking 618126 as yet unmatched pairs. 20766 records in RAM.
INFO 2026-06-08 08:24:49 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr5:109,320,236
INFO 2026-06-08 08:24:49 MarkDuplicates Tracking 617167 as yet unmatched pairs. 19708 records in RAM.
INFO 2026-06-08 08:24:50 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr5:122,819,000
INFO 2026-06-08 08:24:50 MarkDuplicates Tracking 616584 as yet unmatched pairs. 18926 records in RAM.
INFO 2026-06-08 08:24:52 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr5:132,896,376
INFO 2026-06-08 08:24:52 MarkDuplicates Tracking 615724 as yet unmatched pairs. 17878 records in RAM.
INFO 2026-06-08 08:24:53 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr5:138,319,274
INFO 2026-06-08 08:24:53 MarkDuplicates Tracking 614743 as yet unmatched pairs. 16797 records in RAM.
INFO 2026-06-08 08:24:56 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 2s. Last read position: chr5:139,680,984
INFO 2026-06-08 08:24:56 MarkDuplicates Tracking 614985 as yet unmatched pairs. 16947 records in RAM.
INFO 2026-06-08 08:24:58 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr5:141,639,946
INFO 2026-06-08 08:24:58 MarkDuplicates Tracking 613159 as yet unmatched pairs. 14900 records in RAM.
INFO 2026-06-08 08:25:00 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 2s. Last read position: chr5:150,048,579
INFO 2026-06-08 08:25:00 MarkDuplicates Tracking 611878 as yet unmatched pairs. 13487 records in RAM.
INFO 2026-06-08 08:25:02 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,603
INFO 2026-06-08 08:25:02 MarkDuplicates Tracking 635163 as yet unmatched pairs. 36697 records in RAM.
INFO 2026-06-08 08:25:03 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,153
INFO 2026-06-08 08:25:03 MarkDuplicates Tracking 653250 as yet unmatched pairs. 54758 records in RAM.
INFO 2026-06-08 08:25:05 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr5:150,444,335
INFO 2026-06-08 08:25:05 MarkDuplicates Tracking 610308 as yet unmatched pairs. 11691 records in RAM.
INFO 2026-06-08 08:25:06 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr5:151,790,972
INFO 2026-06-08 08:25:06 MarkDuplicates Tracking 607763 as yet unmatched pairs. 9034 records in RAM.
INFO 2026-06-08 08:25:08 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr5:159,024,400
INFO 2026-06-08 08:25:08 MarkDuplicates Tracking 606719 as yet unmatched pairs. 7905 records in RAM.
INFO 2026-06-08 08:25:09 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr5:171,387,960
INFO 2026-06-08 08:25:09 MarkDuplicates Tracking 618539 as yet unmatched pairs. 19536 records in RAM.
INFO 2026-06-08 08:25:11 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr5:172,061,193
INFO 2026-06-08 08:25:11 MarkDuplicates Tracking 605224 as yet unmatched pairs. 6064 records in RAM.
INFO 2026-06-08 08:25:12 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr5:177,210,035
INFO 2026-06-08 08:25:12 MarkDuplicates Tracking 604385 as yet unmatched pairs. 5129 records in RAM.
INFO 2026-06-08 08:25:14 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr5:177,524,291
INFO 2026-06-08 08:25:14 MarkDuplicates Tracking 603512 as yet unmatched pairs. 4146 records in RAM.
INFO 2026-06-08 08:25:16 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr5:179,766,588
INFO 2026-06-08 08:25:16 MarkDuplicates Tracking 602472 as yet unmatched pairs. 3039 records in RAM.
INFO 2026-06-08 08:25:17 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr5:180,792,239
INFO 2026-06-08 08:25:17 MarkDuplicates Tracking 601116 as yet unmatched pairs. 1612 records in RAM.
INFO 2026-06-08 08:25:20 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 2s. Last read position: chr6:2,221,939
INFO 2026-06-08 08:25:20 MarkDuplicates Tracking 599376 as yet unmatched pairs. 35658 records in RAM.
INFO 2026-06-08 08:25:21 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr6:7,231,705
INFO 2026-06-08 08:25:21 MarkDuplicates Tracking 599144 as yet unmatched pairs. 35247 records in RAM.
INFO 2026-06-08 08:25:23 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr6:13,365,013
INFO 2026-06-08 08:25:23 MarkDuplicates Tracking 597759 as yet unmatched pairs. 33731 records in RAM.
INFO 2026-06-08 08:25:24 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr6:21,595,793
INFO 2026-06-08 08:25:24 MarkDuplicates Tracking 596758 as yet unmatched pairs. 32562 records in RAM.
INFO 2026-06-08 08:25:26 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr6:26,199,845
INFO 2026-06-08 08:25:26 MarkDuplicates Tracking 595267 as yet unmatched pairs. 30967 records in RAM.
INFO 2026-06-08 08:25:27 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr6:27,814,511
INFO 2026-06-08 08:25:27 MarkDuplicates Tracking 596900 as yet unmatched pairs. 32516 records in RAM.
INFO 2026-06-08 08:25:29 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr6:29,944,197
INFO 2026-06-08 08:25:29 MarkDuplicates Tracking 595066 as yet unmatched pairs. 30575 records in RAM.
INFO 2026-06-08 08:25:31 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr6:30,685,471
INFO 2026-06-08 08:25:31 MarkDuplicates Tracking 592384 as yet unmatched pairs. 27778 records in RAM.
INFO 2026-06-08 08:25:32 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr6:31,356,752
INFO 2026-06-08 08:25:32 MarkDuplicates Tracking 592785 as yet unmatched pairs. 28111 records in RAM.
INFO 2026-06-08 08:25:33 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr6:31,637,459
INFO 2026-06-08 08:25:33 MarkDuplicates Tracking 590689 as yet unmatched pairs. 25946 records in RAM.
INFO 2026-06-08 08:25:35 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr6:31,962,753
INFO 2026-06-08 08:25:35 MarkDuplicates Tracking 589291 as yet unmatched pairs. 24500 records in RAM.
INFO 2026-06-08 08:25:37 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr6:32,756,445
INFO 2026-06-08 08:25:37 MarkDuplicates Tracking 588654 as yet unmatched pairs. 23763 records in RAM.
INFO 2026-06-08 08:25:38 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr6:32,979,841
INFO 2026-06-08 08:25:38 MarkDuplicates Tracking 588190 as yet unmatched pairs. 23149 records in RAM.
INFO 2026-06-08 08:25:40 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr6:33,313,219
INFO 2026-06-08 08:25:40 MarkDuplicates Tracking 588971 as yet unmatched pairs. 23853 records in RAM.
INFO 2026-06-08 08:25:42 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 2s. Last read position: chr6:34,244,839
INFO 2026-06-08 08:25:42 MarkDuplicates Tracking 585938 as yet unmatched pairs. 20758 records in RAM.
INFO 2026-06-08 08:25:44 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr6:36,687,095
INFO 2026-06-08 08:25:44 MarkDuplicates Tracking 584162 as yet unmatched pairs. 18878 records in RAM.
INFO 2026-06-08 08:25:45 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr6:41,719,454
INFO 2026-06-08 08:25:45 MarkDuplicates Tracking 582941 as yet unmatched pairs. 17531 records in RAM.
INFO 2026-06-08 08:25:48 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 2s. Last read position: chr6:43,221,383
INFO 2026-06-08 08:25:48 MarkDuplicates Tracking 581776 as yet unmatched pairs. 16272 records in RAM.
INFO 2026-06-08 08:25:49 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr6:44,149,912
INFO 2026-06-08 08:25:49 MarkDuplicates Tracking 580420 as yet unmatched pairs. 14806 records in RAM.
INFO 2026-06-08 08:25:51 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr6:52,995,722
INFO 2026-06-08 08:25:51 MarkDuplicates Tracking 598606 as yet unmatched pairs. 32816 records in RAM.
INFO 2026-06-08 08:25:52 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr6:56,836,540
INFO 2026-06-08 08:25:52 MarkDuplicates Tracking 579041 as yet unmatched pairs. 13123 records in RAM.
INFO 2026-06-08 08:25:54 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr6:73,473,493
INFO 2026-06-08 08:25:54 MarkDuplicates Tracking 578089 as yet unmatched pairs. 11955 records in RAM.
INFO 2026-06-08 08:25:55 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr6:83,188,631
INFO 2026-06-08 08:25:55 MarkDuplicates Tracking 577404 as yet unmatched pairs. 11144 records in RAM.
INFO 2026-06-08 08:25:57 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr6:89,673,264
INFO 2026-06-08 08:25:57 MarkDuplicates Tracking 576554 as yet unmatched pairs. 10196 records in RAM.
INFO 2026-06-08 08:25:58 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr6:106,549,116
INFO 2026-06-08 08:25:58 MarkDuplicates Tracking 575731 as yet unmatched pairs. 9245 records in RAM.
INFO 2026-06-08 08:26:00 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr6:111,566,431
INFO 2026-06-08 08:26:00 MarkDuplicates Tracking 574710 as yet unmatched pairs. 8130 records in RAM.
INFO 2026-06-08 08:26:01 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr6:124,962,837
INFO 2026-06-08 08:26:01 MarkDuplicates Tracking 573745 as yet unmatched pairs. 7099 records in RAM.
INFO 2026-06-08 08:26:03 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr6:136,693,903
INFO 2026-06-08 08:26:03 MarkDuplicates Tracking 572845 as yet unmatched pairs. 6080 records in RAM.
INFO 2026-06-08 08:26:04 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr6:144,458,854
INFO 2026-06-08 08:26:04 MarkDuplicates Tracking 571993 as yet unmatched pairs. 5097 records in RAM.
INFO 2026-06-08 08:26:06 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr6:151,417,334
INFO 2026-06-08 08:26:06 MarkDuplicates Tracking 570734 as yet unmatched pairs. 3730 records in RAM.
INFO 2026-06-08 08:26:07 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr6:157,405,395
INFO 2026-06-08 08:26:07 MarkDuplicates Tracking 569871 as yet unmatched pairs. 2713 records in RAM.
INFO 2026-06-08 08:26:09 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr6:160,061,811
INFO 2026-06-08 08:26:09 MarkDuplicates Tracking 569400 as yet unmatched pairs. 2138 records in RAM.
INFO 2026-06-08 08:26:11 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr6:170,317,993
INFO 2026-06-08 08:26:11 MarkDuplicates Tracking 568032 as yet unmatched pairs. 633 records in RAM.
INFO 2026-06-08 08:26:12 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr7:2,255,031
INFO 2026-06-08 08:26:12 MarkDuplicates Tracking 566664 as yet unmatched pairs. 34794 records in RAM.
INFO 2026-06-08 08:26:14 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr7:5,216,589
INFO 2026-06-08 08:26:14 MarkDuplicates Tracking 564482 as yet unmatched pairs. 32506 records in RAM.
INFO 2026-06-08 08:26:16 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 2s. Last read position: chr7:5,514,708
INFO 2026-06-08 08:26:16 MarkDuplicates Tracking 562434 as yet unmatched pairs. 30411 records in RAM.
INFO 2026-06-08 08:26:19 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 2s. Last read position: chr7:5,529,373
INFO 2026-06-08 08:26:19 MarkDuplicates Tracking 569747 as yet unmatched pairs. 37646 records in RAM.
INFO 2026-06-08 08:26:20 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr7:7,574,148
INFO 2026-06-08 08:26:20 MarkDuplicates Tracking 560388 as yet unmatched pairs. 28170 records in RAM.
INFO 2026-06-08 08:26:22 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr7:23,448,998
INFO 2026-06-08 08:26:22 MarkDuplicates Tracking 559520 as yet unmatched pairs. 27143 records in RAM.
INFO 2026-06-08 08:26:24 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr7:30,599,949
INFO 2026-06-08 08:26:24 MarkDuplicates Tracking 559073 as yet unmatched pairs. 26538 records in RAM.
INFO 2026-06-08 08:26:25 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr7:40,744,073
INFO 2026-06-08 08:26:25 MarkDuplicates Tracking 557688 as yet unmatched pairs. 25003 records in RAM.
INFO 2026-06-08 08:26:27 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr7:44,757,033
INFO 2026-06-08 08:26:27 MarkDuplicates Tracking 558091 as yet unmatched pairs. 25314 records in RAM.
INFO 2026-06-08 08:26:29 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr7:55,472,885
INFO 2026-06-08 08:26:29 MarkDuplicates Tracking 556366 as yet unmatched pairs. 23456 records in RAM.
INFO 2026-06-08 08:26:30 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr7:70,134,625
INFO 2026-06-08 08:26:30 MarkDuplicates Tracking 554442 as yet unmatched pairs. 21398 records in RAM.
INFO 2026-06-08 08:26:31 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr7:73,303,483
INFO 2026-06-08 08:26:31 MarkDuplicates Tracking 554382 as yet unmatched pairs. 21292 records in RAM.
INFO 2026-06-08 08:26:33 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr7:74,762,489
INFO 2026-06-08 08:26:33 MarkDuplicates Tracking 552983 as yet unmatched pairs. 19814 records in RAM.
INFO 2026-06-08 08:26:34 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr7:75,472,841
INFO 2026-06-08 08:26:34 MarkDuplicates Tracking 552292 as yet unmatched pairs. 19044 records in RAM.
INFO 2026-06-08 08:26:36 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr7:77,929,113
INFO 2026-06-08 08:26:36 MarkDuplicates Tracking 551572 as yet unmatched pairs. 18243 records in RAM.
INFO 2026-06-08 08:26:37 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr7:92,327,888
INFO 2026-06-08 08:26:37 MarkDuplicates Tracking 550801 as yet unmatched pairs. 17365 records in RAM.
INFO 2026-06-08 08:26:39 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr7:98,911,153
INFO 2026-06-08 08:26:39 MarkDuplicates Tracking 549968 as yet unmatched pairs. 16422 records in RAM.
INFO 2026-06-08 08:26:40 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr7:100,094,209
INFO 2026-06-08 08:26:40 MarkDuplicates Tracking 549211 as yet unmatched pairs. 15611 records in RAM.
INFO 2026-06-08 08:26:42 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr7:100,478,171
INFO 2026-06-08 08:26:42 MarkDuplicates Tracking 547582 as yet unmatched pairs. 13880 records in RAM.
INFO 2026-06-08 08:26:43 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr7:101,223,793
INFO 2026-06-08 08:26:43 MarkDuplicates Tracking 546471 as yet unmatched pairs. 12701 records in RAM.
INFO 2026-06-08 08:26:45 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr7:102,640,253
INFO 2026-06-08 08:26:45 MarkDuplicates Tracking 546151 as yet unmatched pairs. 12301 records in RAM.
INFO 2026-06-08 08:26:46 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr7:107,527,302
INFO 2026-06-08 08:26:46 MarkDuplicates Tracking 544935 as yet unmatched pairs. 10942 records in RAM.
INFO 2026-06-08 08:26:48 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr7:127,589,103
INFO 2026-06-08 08:26:48 MarkDuplicates Tracking 544475 as yet unmatched pairs. 10186 records in RAM.
INFO 2026-06-08 08:26:49 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr7:128,089,672
INFO 2026-06-08 08:26:49 MarkDuplicates Tracking 546179 as yet unmatched pairs. 11828 records in RAM.
INFO 2026-06-08 08:26:51 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr7:133,035,786
INFO 2026-06-08 08:26:51 MarkDuplicates Tracking 542538 as yet unmatched pairs. 8070 records in RAM.
INFO 2026-06-08 08:26:53 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr7:137,913,060
INFO 2026-06-08 08:26:53 MarkDuplicates Tracking 545584 as yet unmatched pairs. 10977 records in RAM.
INFO 2026-06-08 08:26:54 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr7:140,127,529
INFO 2026-06-08 08:26:54 MarkDuplicates Tracking 540291 as yet unmatched pairs. 5569 records in RAM.
INFO 2026-06-08 08:26:56 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 2s. Last read position: chr7:143,755,873
INFO 2026-06-08 08:26:56 MarkDuplicates Tracking 539244 as yet unmatched pairs. 4449 records in RAM.
INFO 2026-06-08 08:26:58 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr7:150,369,764
INFO 2026-06-08 08:26:58 MarkDuplicates Tracking 540196 as yet unmatched pairs. 5298 records in RAM.
INFO 2026-06-08 08:27:00 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr7:151,356,141
INFO 2026-06-08 08:27:00 MarkDuplicates Tracking 536641 as yet unmatched pairs. 1640 records in RAM.
INFO 2026-06-08 08:27:02 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr7:157,169,106
INFO 2026-06-08 08:27:02 MarkDuplicates Tracking 535725 as yet unmatched pairs. 602 records in RAM.
INFO 2026-06-08 08:27:03 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr8:11,107,909
INFO 2026-06-08 08:27:03 MarkDuplicates Tracking 534248 as yet unmatched pairs. 23068 records in RAM.
INFO 2026-06-08 08:27:05 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr8:22,245,162
INFO 2026-06-08 08:27:05 MarkDuplicates Tracking 533209 as yet unmatched pairs. 21916 records in RAM.
INFO 2026-06-08 08:27:07 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr8:25,468,260
INFO 2026-06-08 08:27:07 MarkDuplicates Tracking 532079 as yet unmatched pairs. 20724 records in RAM.
INFO 2026-06-08 08:27:08 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr8:30,095,363
INFO 2026-06-08 08:27:08 MarkDuplicates Tracking 530814 as yet unmatched pairs. 19353 records in RAM.
INFO 2026-06-08 08:27:10 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr8:38,418,314
INFO 2026-06-08 08:27:10 MarkDuplicates Tracking 530574 as yet unmatched pairs. 18987 records in RAM.
INFO 2026-06-08 08:27:11 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr8:41,505,991
INFO 2026-06-08 08:27:11 MarkDuplicates Tracking 529292 as yet unmatched pairs. 17671 records in RAM.
INFO 2026-06-08 08:27:13 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr8:47,969,885
INFO 2026-06-08 08:27:13 MarkDuplicates Tracking 528008 as yet unmatched pairs. 16293 records in RAM.
INFO 2026-06-08 08:27:14 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr8:60,862,210
INFO 2026-06-08 08:27:14 MarkDuplicates Tracking 526994 as yet unmatched pairs. 15191 records in RAM.
INFO 2026-06-08 08:27:16 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr8:70,156,821
INFO 2026-06-08 08:27:16 MarkDuplicates Tracking 526788 as yet unmatched pairs. 14853 records in RAM.
INFO 2026-06-08 08:27:17 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr8:81,702,765
INFO 2026-06-08 08:27:17 MarkDuplicates Tracking 525293 as yet unmatched pairs. 13206 records in RAM.
INFO 2026-06-08 08:27:19 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr8:97,719,110
INFO 2026-06-08 08:27:19 MarkDuplicates Tracking 524699 as yet unmatched pairs. 12475 records in RAM.
INFO 2026-06-08 08:27:21 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr8:100,709,645
INFO 2026-06-08 08:27:21 MarkDuplicates Tracking 524927 as yet unmatched pairs. 12507 records in RAM.
INFO 2026-06-08 08:27:22 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr8:102,403,354
INFO 2026-06-08 08:27:22 MarkDuplicates Tracking 522504 as yet unmatched pairs. 9978 records in RAM.
INFO 2026-06-08 08:27:24 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr8:120,811,482
INFO 2026-06-08 08:27:24 MarkDuplicates Tracking 521971 as yet unmatched pairs. 9340 records in RAM.
INFO 2026-06-08 08:27:26 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr8:127,740,953
INFO 2026-06-08 08:27:26 MarkDuplicates Tracking 520803 as yet unmatched pairs. 8039 records in RAM.
INFO 2026-06-08 08:28:23 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 57s. Last read position: chr8:141,427,055
INFO 2026-06-08 08:28:23 MarkDuplicates Tracking 520429 as yet unmatched pairs. 7459 records in RAM.
INFO 2026-06-08 08:28:25 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr8:143,804,647
INFO 2026-06-08 08:28:25 MarkDuplicates Tracking 518386 as yet unmatched pairs. 5302 records in RAM.
INFO 2026-06-08 08:28:27 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr8:143,986,090
INFO 2026-06-08 08:28:27 MarkDuplicates Tracking 517514 as yet unmatched pairs. 4383 records in RAM.
INFO 2026-06-08 08:28:28 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr8:144,399,619
INFO 2026-06-08 08:28:28 MarkDuplicates Tracking 515061 as yet unmatched pairs. 1868 records in RAM.
INFO 2026-06-08 08:28:30 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 1s. Last read position: chr9:423,106
INFO 2026-06-08 08:28:30 MarkDuplicates Tracking 513357 as yet unmatched pairs. 29563 records in RAM.
INFO 2026-06-08 08:28:32 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr9:5,763,711
INFO 2026-06-08 08:28:32 MarkDuplicates Tracking 512909 as yet unmatched pairs. 28928 records in RAM.
INFO 2026-06-08 08:28:34 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr9:9,442,129
INFO 2026-06-08 08:28:34 MarkDuplicates Tracking 515101 as yet unmatched pairs. 30921 records in RAM.
INFO 2026-06-08 08:28:35 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr9:19,357,144
INFO 2026-06-08 08:28:35 MarkDuplicates Tracking 510043 as yet unmatched pairs. 25791 records in RAM.
INFO 2026-06-08 08:28:37 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 1s. Last read position: chr9:33,166,947
INFO 2026-06-08 08:28:37 MarkDuplicates Tracking 510154 as yet unmatched pairs. 25776 records in RAM.
INFO 2026-06-08 08:28:38 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr9:35,107,533
INFO 2026-06-08 08:28:38 MarkDuplicates Tracking 507773 as yet unmatched pairs. 23291 records in RAM.
INFO 2026-06-08 08:28:40 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr9:36,834,574
INFO 2026-06-08 08:28:40 MarkDuplicates Tracking 507214 as yet unmatched pairs. 22652 records in RAM.
INFO 2026-06-08 08:28:41 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr9:37,020,731
INFO 2026-06-08 08:28:41 MarkDuplicates Tracking 505732 as yet unmatched pairs. 21122 records in RAM.
INFO 2026-06-08 08:28:43 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr9:68,489,470
INFO 2026-06-08 08:28:43 MarkDuplicates Tracking 504714 as yet unmatched pairs. 19969 records in RAM.
INFO 2026-06-08 08:28:45 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr9:84,000,992
INFO 2026-06-08 08:28:45 MarkDuplicates Tracking 503951 as yet unmatched pairs. 19116 records in RAM.
INFO 2026-06-08 08:28:46 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr9:92,223,387
INFO 2026-06-08 08:28:46 MarkDuplicates Tracking 504148 as yet unmatched pairs. 19216 records in RAM.
INFO 2026-06-08 08:28:48 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr9:95,697,901
INFO 2026-06-08 08:28:48 MarkDuplicates Tracking 502033 as yet unmatched pairs. 17022 records in RAM.
INFO 2026-06-08 08:28:50 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr9:107,283,353
INFO 2026-06-08 08:28:50 MarkDuplicates Tracking 500991 as yet unmatched pairs. 15889 records in RAM.
INFO 2026-06-08 08:28:52 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr9:113,286,237
INFO 2026-06-08 08:28:52 MarkDuplicates Tracking 499941 as yet unmatched pairs. 14748 records in RAM.
INFO 2026-06-08 08:28:53 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr9:120,913,483
INFO 2026-06-08 08:28:53 MarkDuplicates Tracking 500156 as yet unmatched pairs. 14912 records in RAM.
INFO 2026-06-08 08:28:55 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr9:123,629,649
INFO 2026-06-08 08:28:55 MarkDuplicates Tracking 498451 as yet unmatched pairs. 13104 records in RAM.
INFO 2026-06-08 08:28:56 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr9:127,449,297
INFO 2026-06-08 08:28:56 MarkDuplicates Tracking 498841 as yet unmatched pairs. 13337 records in RAM.
INFO 2026-06-08 08:28:58 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr9:128,353,428
INFO 2026-06-08 08:28:58 MarkDuplicates Tracking 495895 as yet unmatched pairs. 10290 records in RAM.
INFO 2026-06-08 08:28:59 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr9:129,137,653
INFO 2026-06-08 08:28:59 MarkDuplicates Tracking 495125 as yet unmatched pairs. 9450 records in RAM.
INFO 2026-06-08 08:29:01 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr9:130,884,711
INFO 2026-06-08 08:29:01 MarkDuplicates Tracking 494517 as yet unmatched pairs. 8755 records in RAM.
INFO 2026-06-08 08:29:03 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr9:132,264,583
INFO 2026-06-08 08:29:03 MarkDuplicates Tracking 493213 as yet unmatched pairs. 7361 records in RAM.
INFO 2026-06-08 08:29:04 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr9:133,400,554
INFO 2026-06-08 08:29:04 MarkDuplicates Tracking 491652 as yet unmatched pairs. 5735 records in RAM.
INFO 2026-06-08 08:29:06 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr9:136,445,658
INFO 2026-06-08 08:29:06 MarkDuplicates Tracking 490655 as yet unmatched pairs. 4691 records in RAM.
INFO 2026-06-08 08:29:07 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr9:136,840,788
INFO 2026-06-08 08:29:07 MarkDuplicates Tracking 490063 as yet unmatched pairs. 4027 records in RAM.
INFO 2026-06-08 08:29:09 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr9:137,256,905
INFO 2026-06-08 08:29:09 MarkDuplicates Tracking 487271 as yet unmatched pairs. 1167 records in RAM.
INFO 2026-06-08 08:29:11 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr10:3,163,807
INFO 2026-06-08 08:29:11 MarkDuplicates Tracking 486053 as yet unmatched pairs. 21034 records in RAM.
INFO 2026-06-08 08:29:12 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr10:12,029,178
INFO 2026-06-08 08:29:12 MarkDuplicates Tracking 485067 as yet unmatched pairs. 19895 records in RAM.
INFO 2026-06-08 08:29:14 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 2s. Last read position: chr10:20,149,474
INFO 2026-06-08 08:29:14 MarkDuplicates Tracking 483742 as yet unmatched pairs. 18510 records in RAM.
INFO 2026-06-08 08:29:16 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr10:29,523,791
INFO 2026-06-08 08:29:16 MarkDuplicates Tracking 482865 as yet unmatched pairs. 17528 records in RAM.
INFO 2026-06-08 08:29:18 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr10:37,783,754
INFO 2026-06-08 08:29:18 MarkDuplicates Tracking 482071 as yet unmatched pairs. 16618 records in RAM.
INFO 2026-06-08 08:29:19 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr10:46,357,502
INFO 2026-06-08 08:29:19 MarkDuplicates Tracking 481369 as yet unmatched pairs. 15855 records in RAM.
INFO 2026-06-08 08:29:21 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr10:50,093,863
INFO 2026-06-08 08:29:21 MarkDuplicates Tracking 480747 as yet unmatched pairs. 15171 records in RAM.
INFO 2026-06-08 08:29:22 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr10:68,067,987
INFO 2026-06-08 08:29:22 MarkDuplicates Tracking 479678 as yet unmatched pairs. 14022 records in RAM.
INFO 2026-06-08 08:29:24 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr10:72,353,207
INFO 2026-06-08 08:29:24 MarkDuplicates Tracking 478395 as yet unmatched pairs. 12691 records in RAM.
INFO 2026-06-08 08:29:25 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr10:74,843,377
INFO 2026-06-08 08:29:25 MarkDuplicates Tracking 477712 as yet unmatched pairs. 11874 records in RAM.
INFO 2026-06-08 08:29:27 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr10:80,170,885
INFO 2026-06-08 08:29:27 MarkDuplicates Tracking 478838 as yet unmatched pairs. 12885 records in RAM.
INFO 2026-06-08 08:29:28 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr10:87,961,056
INFO 2026-06-08 08:29:28 MarkDuplicates Tracking 476806 as yet unmatched pairs. 10780 records in RAM.
INFO 2026-06-08 08:29:30 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr10:93,901,227
INFO 2026-06-08 08:29:30 MarkDuplicates Tracking 474540 as yet unmatched pairs. 8430 records in RAM.
INFO 2026-06-08 08:29:32 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr10:96,168,061
INFO 2026-06-08 08:29:32 MarkDuplicates Tracking 473729 as yet unmatched pairs. 7527 records in RAM.
INFO 2026-06-08 08:29:33 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr10:99,402,629
INFO 2026-06-08 08:29:33 MarkDuplicates Tracking 472937 as yet unmatched pairs. 6630 records in RAM.
INFO 2026-06-08 08:29:35 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr10:102,111,344
INFO 2026-06-08 08:29:35 MarkDuplicates Tracking 472232 as yet unmatched pairs. 5865 records in RAM.
INFO 2026-06-08 08:29:36 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr10:103,413,259
INFO 2026-06-08 08:29:36 MarkDuplicates Tracking 470501 as yet unmatched pairs. 4074 records in RAM.
INFO 2026-06-08 08:29:38 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr10:114,821,957
INFO 2026-06-08 08:29:38 MarkDuplicates Tracking 469425 as yet unmatched pairs. 2876 records in RAM.
INFO 2026-06-08 08:29:40 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr10:124,681,607
INFO 2026-06-08 08:29:40 MarkDuplicates Tracking 468496 as yet unmatched pairs. 1875 records in RAM.
INFO 2026-06-08 08:29:42 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr10:133,273,950
INFO 2026-06-08 08:29:42 MarkDuplicates Tracking 467944 as yet unmatched pairs. 1225 records in RAM.
INFO 2026-06-08 08:29:44 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr11:315,012
INFO 2026-06-08 08:29:44 MarkDuplicates Tracking 473091 as yet unmatched pairs. 47544 records in RAM.
INFO 2026-06-08 08:29:45 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr11:799,980
INFO 2026-06-08 08:29:45 MarkDuplicates Tracking 464661 as yet unmatched pairs. 39045 records in RAM.
INFO 2026-06-08 08:29:47 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr11:2,945,598
INFO 2026-06-08 08:29:47 MarkDuplicates Tracking 462834 as yet unmatched pairs. 37153 records in RAM.
INFO 2026-06-08 08:29:49 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr11:6,502,753
INFO 2026-06-08 08:29:49 MarkDuplicates Tracking 461872 as yet unmatched pairs. 36144 records in RAM.
INFO 2026-06-08 08:29:50 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr11:9,574,203
INFO 2026-06-08 08:29:50 MarkDuplicates Tracking 460635 as yet unmatched pairs. 34847 records in RAM.
INFO 2026-06-08 08:29:52 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr11:17,114,430
INFO 2026-06-08 08:29:52 MarkDuplicates Tracking 459736 as yet unmatched pairs. 33864 records in RAM.
INFO 2026-06-08 08:29:53 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr11:33,348,629
INFO 2026-06-08 08:29:53 MarkDuplicates Tracking 458974 as yet unmatched pairs. 32982 records in RAM.
INFO 2026-06-08 08:29:55 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr11:45,860,900
INFO 2026-06-08 08:29:55 MarkDuplicates Tracking 457905 as yet unmatched pairs. 31815 records in RAM.
INFO 2026-06-08 08:29:57 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr11:47,358,786
INFO 2026-06-08 08:29:57 MarkDuplicates Tracking 457586 as yet unmatched pairs. 31443 records in RAM.
INFO 2026-06-08 08:29:58 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr11:57,741,564
INFO 2026-06-08 08:29:58 MarkDuplicates Tracking 456300 as yet unmatched pairs. 30064 records in RAM.
INFO 2026-06-08 08:30:00 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr11:60,469,485
INFO 2026-06-08 08:30:00 MarkDuplicates Tracking 458205 as yet unmatched pairs. 31914 records in RAM.
INFO 2026-06-08 08:30:02 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 2s. Last read position: chr11:61,802,416
INFO 2026-06-08 08:30:02 MarkDuplicates Tracking 453921 as yet unmatched pairs. 27533 records in RAM.
INFO 2026-06-08 08:30:04 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr11:62,611,106
INFO 2026-06-08 08:30:04 MarkDuplicates Tracking 453594 as yet unmatched pairs. 27165 records in RAM.
INFO 2026-06-08 08:30:05 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr11:63,764,583
INFO 2026-06-08 08:30:05 MarkDuplicates Tracking 451958 as yet unmatched pairs. 25507 records in RAM.
INFO 2026-06-08 08:30:07 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr11:64,320,873
INFO 2026-06-08 08:30:07 MarkDuplicates Tracking 450821 as yet unmatched pairs. 24316 records in RAM.
INFO 2026-06-08 08:30:09 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr11:64,878,245
INFO 2026-06-08 08:30:09 MarkDuplicates Tracking 449704 as yet unmatched pairs. 23157 records in RAM.
INFO 2026-06-08 08:30:10 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr11:65,394,263
INFO 2026-06-08 08:30:10 MarkDuplicates Tracking 447518 as yet unmatched pairs. 20934 records in RAM.
INFO 2026-06-08 08:30:12 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr11:65,505,159
INFO 2026-06-08 08:30:12 MarkDuplicates Tracking 446361 as yet unmatched pairs. 19600 records in RAM.
INFO 2026-06-08 08:30:13 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr11:65,649,319
INFO 2026-06-08 08:30:13 MarkDuplicates Tracking 445360 as yet unmatched pairs. 18518 records in RAM.
INFO 2026-06-08 08:30:15 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr11:66,070,496
INFO 2026-06-08 08:30:15 MarkDuplicates Tracking 444379 as yet unmatched pairs. 17513 records in RAM.
INFO 2026-06-08 08:30:16 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr11:67,250,328
INFO 2026-06-08 08:30:16 MarkDuplicates Tracking 442132 as yet unmatched pairs. 15197 records in RAM.
INFO 2026-06-08 08:30:18 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr11:67,493,488
INFO 2026-06-08 08:30:18 MarkDuplicates Tracking 440840 as yet unmatched pairs. 13845 records in RAM.
INFO 2026-06-08 08:30:20 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr11:68,476,037
INFO 2026-06-08 08:30:20 MarkDuplicates Tracking 438439 as yet unmatched pairs. 11394 records in RAM.
INFO 2026-06-08 08:30:21 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr11:72,015,258
INFO 2026-06-08 08:30:21 MarkDuplicates Tracking 437864 as yet unmatched pairs. 10756 records in RAM.
INFO 2026-06-08 08:30:23 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr11:73,309,878
INFO 2026-06-08 08:30:23 MarkDuplicates Tracking 436010 as yet unmatched pairs. 8804 records in RAM.
INFO 2026-06-08 08:30:25 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr11:77,343,897
INFO 2026-06-08 08:30:25 MarkDuplicates Tracking 435241 as yet unmatched pairs. 7962 records in RAM.
INFO 2026-06-08 08:30:27 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr11:88,334,984
INFO 2026-06-08 08:30:27 MarkDuplicates Tracking 434757 as yet unmatched pairs. 7386 records in RAM.
INFO 2026-06-08 08:30:28 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr11:103,082,765
INFO 2026-06-08 08:30:28 MarkDuplicates Tracking 432913 as yet unmatched pairs. 5461 records in RAM.
INFO 2026-06-08 08:30:30 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr11:112,025,549
INFO 2026-06-08 08:30:30 MarkDuplicates Tracking 432440 as yet unmatched pairs. 4837 records in RAM.
INFO 2026-06-08 08:30:31 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr11:118,472,253
INFO 2026-06-08 08:30:31 MarkDuplicates Tracking 431298 as yet unmatched pairs. 3592 records in RAM.
INFO 2026-06-08 08:30:33 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr11:119,287,912
INFO 2026-06-08 08:30:33 MarkDuplicates Tracking 430171 as yet unmatched pairs. 2422 records in RAM.
INFO 2026-06-08 08:30:35 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr11:125,602,322
INFO 2026-06-08 08:30:35 MarkDuplicates Tracking 428982 as yet unmatched pairs. 1110 records in RAM.
INFO 2026-06-08 08:30:36 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr12:318,135
INFO 2026-06-08 08:30:36 MarkDuplicates Tracking 428087 as yet unmatched pairs. 37374 records in RAM.
INFO 2026-06-08 08:30:38 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr12:4,273,931
INFO 2026-06-08 08:30:38 MarkDuplicates Tracking 427205 as yet unmatched pairs. 36406 records in RAM.
INFO 2026-06-08 08:30:40 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr12:6,595,421
INFO 2026-06-08 08:30:40 MarkDuplicates Tracking 426201 as yet unmatched pairs. 35340 records in RAM.
INFO 2026-06-08 08:30:41 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr12:6,957,939
INFO 2026-06-08 08:30:41 MarkDuplicates Tracking 426235 as yet unmatched pairs. 35306 records in RAM.
INFO 2026-06-08 08:30:43 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr12:9,715,792
INFO 2026-06-08 08:30:43 MarkDuplicates Tracking 423749 as yet unmatched pairs. 32788 records in RAM.
INFO 2026-06-08 08:30:44 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr12:12,718,856
INFO 2026-06-08 08:30:44 MarkDuplicates Tracking 423066 as yet unmatched pairs. 32023 records in RAM.
INFO 2026-06-08 08:30:46 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 2s. Last read position: chr12:24,930,323
INFO 2026-06-08 08:30:46 MarkDuplicates Tracking 422416 as yet unmatched pairs. 31302 records in RAM.
INFO 2026-06-08 08:30:48 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 2s. Last read position: chr12:27,041,675
INFO 2026-06-08 08:30:48 MarkDuplicates Tracking 421158 as yet unmatched pairs. 29967 records in RAM.
INFO 2026-06-08 08:30:50 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr12:40,278,131
INFO 2026-06-08 08:30:50 MarkDuplicates Tracking 420653 as yet unmatched pairs. 29371 records in RAM.
INFO 2026-06-08 08:30:51 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr12:47,784,109
INFO 2026-06-08 08:30:51 MarkDuplicates Tracking 419759 as yet unmatched pairs. 28361 records in RAM.
INFO 2026-06-08 08:30:53 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr12:49,050,152
INFO 2026-06-08 08:30:53 MarkDuplicates Tracking 418916 as yet unmatched pairs. 27459 records in RAM.
INFO 2026-06-08 08:30:54 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr12:49,796,125
INFO 2026-06-08 08:30:54 MarkDuplicates Tracking 417520 as yet unmatched pairs. 26023 records in RAM.
INFO 2026-06-08 08:30:56 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr12:53,193,678
INFO 2026-06-08 08:30:56 MarkDuplicates Tracking 417141 as yet unmatched pairs. 25588 records in RAM.
INFO 2026-06-08 08:30:58 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr12:53,665,336
INFO 2026-06-08 08:30:58 MarkDuplicates Tracking 418164 as yet unmatched pairs. 26567 records in RAM.
INFO 2026-06-08 08:30:59 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr12:55,818,416
INFO 2026-06-08 08:30:59 MarkDuplicates Tracking 414512 as yet unmatched pairs. 22867 records in RAM.
INFO 2026-06-08 08:31:01 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr12:56,326,699
INFO 2026-06-08 08:31:01 MarkDuplicates Tracking 414205 as yet unmatched pairs. 22529 records in RAM.
INFO 2026-06-08 08:31:02 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr12:56,718,724
INFO 2026-06-08 08:31:02 MarkDuplicates Tracking 412794 as yet unmatched pairs. 21089 records in RAM.
INFO 2026-06-08 08:31:04 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr12:57,105,487
INFO 2026-06-08 08:31:04 MarkDuplicates Tracking 413217 as yet unmatched pairs. 21494 records in RAM.
INFO 2026-06-08 08:31:06 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr12:57,526,366
INFO 2026-06-08 08:31:06 MarkDuplicates Tracking 410990 as yet unmatched pairs. 19230 records in RAM.
INFO 2026-06-08 08:31:07 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr12:64,431,551
INFO 2026-06-08 08:31:07 MarkDuplicates Tracking 410506 as yet unmatched pairs. 18692 records in RAM.
INFO 2026-06-08 08:31:09 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr12:69,586,313
INFO 2026-06-08 08:31:09 MarkDuplicates Tracking 409124 as yet unmatched pairs. 17239 records in RAM.
INFO 2026-06-08 08:31:11 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 2s. Last read position: chr12:89,608,540
INFO 2026-06-08 08:31:11 MarkDuplicates Tracking 407729 as yet unmatched pairs. 15736 records in RAM.
INFO 2026-06-08 08:31:13 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr12:95,300,540
INFO 2026-06-08 08:31:13 MarkDuplicates Tracking 406657 as yet unmatched pairs. 14561 records in RAM.
INFO 2026-06-08 08:31:15 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr12:103,934,051
INFO 2026-06-08 08:31:15 MarkDuplicates Tracking 406537 as yet unmatched pairs. 14346 records in RAM.
INFO 2026-06-08 08:31:16 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr12:108,524,415
INFO 2026-06-08 08:31:16 MarkDuplicates Tracking 404747 as yet unmatched pairs. 12436 records in RAM.
INFO 2026-06-08 08:31:18 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr12:110,683,237
INFO 2026-06-08 08:31:18 MarkDuplicates Tracking 403676 as yet unmatched pairs. 11312 records in RAM.
INFO 2026-06-08 08:31:19 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr12:112,267,194
INFO 2026-06-08 08:31:19 MarkDuplicates Tracking 402588 as yet unmatched pairs. 10167 records in RAM.
INFO 2026-06-08 08:31:21 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr12:113,159,049
INFO 2026-06-08 08:31:21 MarkDuplicates Tracking 401154 as yet unmatched pairs. 8704 records in RAM.
INFO 2026-06-08 08:31:22 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr12:120,097,238
INFO 2026-06-08 08:31:22 MarkDuplicates Tracking 400786 as yet unmatched pairs. 8289 records in RAM.
INFO 2026-06-08 08:31:24 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr12:121,004,222
INFO 2026-06-08 08:31:24 MarkDuplicates Tracking 398803 as yet unmatched pairs. 6233 records in RAM.
INFO 2026-06-08 08:31:25 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr12:122,602,617
INFO 2026-06-08 08:31:25 MarkDuplicates Tracking 397841 as yet unmatched pairs. 5208 records in RAM.
INFO 2026-06-08 08:31:27 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr12:124,344,720
INFO 2026-06-08 08:31:27 MarkDuplicates Tracking 398131 as yet unmatched pairs. 5402 records in RAM.
INFO 2026-06-08 08:31:29 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr12:131,714,928
INFO 2026-06-08 08:31:29 MarkDuplicates Tracking 395481 as yet unmatched pairs. 2682 records in RAM.
INFO 2026-06-08 08:31:30 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr12:132,701,316
INFO 2026-06-08 08:31:30 MarkDuplicates Tracking 393952 as yet unmatched pairs. 1095 records in RAM.
INFO 2026-06-08 08:31:32 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr13:20,006,446
INFO 2026-06-08 08:31:32 MarkDuplicates Tracking 393644 as yet unmatched pairs. 10160 records in RAM.
INFO 2026-06-08 08:31:33 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr13:26,385,240
INFO 2026-06-08 08:31:33 MarkDuplicates Tracking 391671 as yet unmatched pairs. 8092 records in RAM.
INFO 2026-06-08 08:31:35 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr13:32,742,591
INFO 2026-06-08 08:31:35 MarkDuplicates Tracking 390794 as yet unmatched pairs. 7170 records in RAM.
INFO 2026-06-08 08:31:36 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr13:42,303,663
INFO 2026-06-08 08:31:36 MarkDuplicates Tracking 390006 as yet unmatched pairs. 6303 records in RAM.
INFO 2026-06-08 08:31:38 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr13:48,077,127
INFO 2026-06-08 08:31:38 MarkDuplicates Tracking 388817 as yet unmatched pairs. 5045 records in RAM.
INFO 2026-06-08 08:31:39 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr13:60,483,803
INFO 2026-06-08 08:31:39 MarkDuplicates Tracking 387770 as yet unmatched pairs. 3917 records in RAM.
INFO 2026-06-08 08:31:41 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr13:77,326,649
INFO 2026-06-08 08:31:41 MarkDuplicates Tracking 387485 as yet unmatched pairs. 3552 records in RAM.
INFO 2026-06-08 08:31:43 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr13:100,301,447
INFO 2026-06-08 08:31:43 MarkDuplicates Tracking 385611 as yet unmatched pairs. 1592 records in RAM.
INFO 2026-06-08 08:31:46 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 2s. Last read position: chr13:113,623,127
INFO 2026-06-08 08:31:46 MarkDuplicates Tracking 384787 as yet unmatched pairs. 694 records in RAM.
INFO 2026-06-08 08:31:48 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr14:21,360,448
INFO 2026-06-08 08:31:48 MarkDuplicates Tracking 383679 as yet unmatched pairs. 26350 records in RAM.
INFO 2026-06-08 08:31:49 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr14:23,061,596
INFO 2026-06-08 08:31:49 MarkDuplicates Tracking 382621 as yet unmatched pairs. 25234 records in RAM.
INFO 2026-06-08 08:31:51 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr14:24,151,184
INFO 2026-06-08 08:31:51 MarkDuplicates Tracking 382048 as yet unmatched pairs. 24632 records in RAM.
INFO 2026-06-08 08:31:52 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr14:24,432,171
INFO 2026-06-08 08:31:52 MarkDuplicates Tracking 380049 as yet unmatched pairs. 22604 records in RAM.
INFO 2026-06-08 08:31:54 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr14:35,402,397
INFO 2026-06-08 08:31:54 MarkDuplicates Tracking 379910 as yet unmatched pairs. 22403 records in RAM.
INFO 2026-06-08 08:31:56 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,592
INFO 2026-06-08 08:31:56 MarkDuplicates Tracking 433106 as yet unmatched pairs. 75513 records in RAM.
INFO 2026-06-08 08:31:57 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,670
INFO 2026-06-08 08:31:57 MarkDuplicates Tracking 435198 as yet unmatched pairs. 77578 records in RAM.
INFO 2026-06-08 08:31:58 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,773
INFO 2026-06-08 08:31:58 MarkDuplicates Tracking 376744 as yet unmatched pairs. 19069 records in RAM.
INFO 2026-06-08 08:32:00 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,587
INFO 2026-06-08 08:32:00 MarkDuplicates Tracking 402410 as yet unmatched pairs. 44689 records in RAM.
INFO 2026-06-08 08:32:01 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,671
INFO 2026-06-08 08:32:01 MarkDuplicates Tracking 418987 as yet unmatched pairs. 61182 records in RAM.
INFO 2026-06-08 08:32:02 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr14:50,792,780
INFO 2026-06-08 08:32:02 MarkDuplicates Tracking 374617 as yet unmatched pairs. 16716 records in RAM.
INFO 2026-06-08 08:32:04 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr14:58,247,794
INFO 2026-06-08 08:32:04 MarkDuplicates Tracking 373894 as yet unmatched pairs. 15954 records in RAM.
INFO 2026-06-08 08:32:06 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr14:64,053,062
INFO 2026-06-08 08:32:06 MarkDuplicates Tracking 372357 as yet unmatched pairs. 14376 records in RAM.
INFO 2026-06-08 08:32:07 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr14:66,801,646
INFO 2026-06-08 08:32:07 MarkDuplicates Tracking 371459 as yet unmatched pairs. 13406 records in RAM.
INFO 2026-06-08 08:32:09 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr14:69,779,852
INFO 2026-06-08 08:32:09 MarkDuplicates Tracking 370156 as yet unmatched pairs. 12007 records in RAM.
INFO 2026-06-08 08:32:10 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr14:73,292,770
INFO 2026-06-08 08:32:10 MarkDuplicates Tracking 369571 as yet unmatched pairs. 11384 records in RAM.
INFO 2026-06-08 08:32:12 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr14:75,279,932
INFO 2026-06-08 08:32:12 MarkDuplicates Tracking 368203 as yet unmatched pairs. 9971 records in RAM.
INFO 2026-06-08 08:32:13 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr14:90,318,035
INFO 2026-06-08 08:32:13 MarkDuplicates Tracking 367165 as yet unmatched pairs. 8849 records in RAM.
INFO 2026-06-08 08:32:15 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr14:94,062,311
INFO 2026-06-08 08:32:15 MarkDuplicates Tracking 366615 as yet unmatched pairs. 8228 records in RAM.
INFO 2026-06-08 08:32:16 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr14:100,141,733
INFO 2026-06-08 08:32:16 MarkDuplicates Tracking 365825 as yet unmatched pairs. 7364 records in RAM.
INFO 2026-06-08 08:32:18 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr14:102,434,498
INFO 2026-06-08 08:32:18 MarkDuplicates Tracking 363993 as yet unmatched pairs. 5487 records in RAM.
INFO 2026-06-08 08:32:19 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr14:105,051,949
INFO 2026-06-08 08:32:19 MarkDuplicates Tracking 363175 as yet unmatched pairs. 4618 records in RAM.
INFO 2026-06-08 08:32:21 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr14:105,769,332
INFO 2026-06-08 08:32:21 MarkDuplicates Tracking 365519 as yet unmatched pairs. 6890 records in RAM.
INFO 2026-06-08 08:32:22 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr14:105,854,522
INFO 2026-06-08 08:32:22 MarkDuplicates Tracking 362609 as yet unmatched pairs. 3942 records in RAM.
INFO 2026-06-08 08:32:24 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr14:105,928,653
INFO 2026-06-08 08:32:24 MarkDuplicates Tracking 361546 as yet unmatched pairs. 2824 records in RAM.
INFO 2026-06-08 08:32:26 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr15:28,163,142
INFO 2026-06-08 08:32:26 MarkDuplicates Tracking 358448 as yet unmatched pairs. 20867 records in RAM.
INFO 2026-06-08 08:32:27 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr15:34,382,407
INFO 2026-06-08 08:32:27 MarkDuplicates Tracking 358399 as yet unmatched pairs. 20773 records in RAM.
INFO 2026-06-08 08:32:28 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr15:40,419,273
INFO 2026-06-08 08:32:28 MarkDuplicates Tracking 356417 as yet unmatched pairs. 18766 records in RAM.
INFO 2026-06-08 08:32:30 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr15:41,767,125
INFO 2026-06-08 08:32:30 MarkDuplicates Tracking 355769 as yet unmatched pairs. 18090 records in RAM.
INFO 2026-06-08 08:32:32 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 2s. Last read position: chr15:43,613,980
INFO 2026-06-08 08:32:32 MarkDuplicates Tracking 354627 as yet unmatched pairs. 16877 records in RAM.
INFO 2026-06-08 08:32:34 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr15:45,405,367
INFO 2026-06-08 08:32:34 MarkDuplicates Tracking 353310 as yet unmatched pairs. 15503 records in RAM.
INFO 2026-06-08 08:32:36 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr15:52,384,215
INFO 2026-06-08 08:32:36 MarkDuplicates Tracking 352269 as yet unmatched pairs. 14427 records in RAM.
INFO 2026-06-08 08:32:37 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr15:58,627,737
INFO 2026-06-08 08:32:37 MarkDuplicates Tracking 351483 as yet unmatched pairs. 13536 records in RAM.
INFO 2026-06-08 08:32:39 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr15:63,155,626
INFO 2026-06-08 08:32:39 MarkDuplicates Tracking 351535 as yet unmatched pairs. 13527 records in RAM.
INFO 2026-06-08 08:32:40 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr15:64,931,490
INFO 2026-06-08 08:32:40 MarkDuplicates Tracking 349969 as yet unmatched pairs. 11913 records in RAM.
INFO 2026-06-08 08:32:42 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr15:67,543,401
INFO 2026-06-08 08:32:42 MarkDuplicates Tracking 348627 as yet unmatched pairs. 10532 records in RAM.
INFO 2026-06-08 08:32:44 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr15:72,570,172
INFO 2026-06-08 08:32:44 MarkDuplicates Tracking 347386 as yet unmatched pairs. 9222 records in RAM.
INFO 2026-06-08 08:32:45 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr15:74,417,416
INFO 2026-06-08 08:32:45 MarkDuplicates Tracking 347118 as yet unmatched pairs. 8898 records in RAM.
INFO 2026-06-08 08:32:47 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr15:75,208,025
INFO 2026-06-08 08:32:47 MarkDuplicates Tracking 346341 as yet unmatched pairs. 8096 records in RAM.
INFO 2026-06-08 08:32:48 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr15:77,340,905
INFO 2026-06-08 08:32:48 MarkDuplicates Tracking 343341 as yet unmatched pairs. 5016 records in RAM.
INFO 2026-06-08 08:32:50 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr15:82,536,864
INFO 2026-06-08 08:32:50 MarkDuplicates Tracking 343965 as yet unmatched pairs. 5595 records in RAM.
INFO 2026-06-08 08:32:51 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr15:88,630,243
INFO 2026-06-08 08:32:51 MarkDuplicates Tracking 341169 as yet unmatched pairs. 2740 records in RAM.
INFO 2026-06-08 08:32:53 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr15:90,956,764
INFO 2026-06-08 08:32:53 MarkDuplicates Tracking 340436 as yet unmatched pairs. 1976 records in RAM.
INFO 2026-06-08 08:32:54 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr15:101,251,319
INFO 2026-06-08 08:32:54 MarkDuplicates Tracking 338732 as yet unmatched pairs. 214 records in RAM.
INFO 2026-06-08 08:32:56 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr16:590,250
INFO 2026-06-08 08:32:56 MarkDuplicates Tracking 337175 as yet unmatched pairs. 43969 records in RAM.
INFO 2026-06-08 08:32:58 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr16:1,499,237
INFO 2026-06-08 08:32:58 MarkDuplicates Tracking 335541 as yet unmatched pairs. 42307 records in RAM.
INFO 2026-06-08 08:32:59 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr16:2,061,881
INFO 2026-06-08 08:32:59 MarkDuplicates Tracking 333549 as yet unmatched pairs. 40297 records in RAM.
INFO 2026-06-08 08:33:01 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr16:2,530,453
INFO 2026-06-08 08:33:01 MarkDuplicates Tracking 332161 as yet unmatched pairs. 38858 records in RAM.
INFO 2026-06-08 08:33:03 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr16:2,769,163
INFO 2026-06-08 08:33:03 MarkDuplicates Tracking 330824 as yet unmatched pairs. 37498 records in RAM.
INFO 2026-06-08 08:33:05 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 2s. Last read position: chr16:3,740,399
INFO 2026-06-08 08:33:05 MarkDuplicates Tracking 329251 as yet unmatched pairs. 35888 records in RAM.
INFO 2026-06-08 08:33:06 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr16:5,095,475
INFO 2026-06-08 08:33:06 MarkDuplicates Tracking 327772 as yet unmatched pairs. 34374 records in RAM.
INFO 2026-06-08 08:33:07 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr16:11,691,755
INFO 2026-06-08 08:33:07 MarkDuplicates Tracking 327499 as yet unmatched pairs. 34079 records in RAM.
INFO 2026-06-08 08:33:09 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr16:14,725,837
INFO 2026-06-08 08:33:09 MarkDuplicates Tracking 325546 as yet unmatched pairs. 32080 records in RAM.
INFO 2026-06-08 08:33:10 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr16:15,650,270
INFO 2026-06-08 08:33:10 MarkDuplicates Tracking 324782 as yet unmatched pairs. 31266 records in RAM.
INFO 2026-06-08 08:33:12 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr16:16,371,984
INFO 2026-06-08 08:33:12 MarkDuplicates Tracking 324166 as yet unmatched pairs. 30635 records in RAM.
INFO 2026-06-08 08:33:13 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr16:18,792,088
INFO 2026-06-08 08:33:13 MarkDuplicates Tracking 323418 as yet unmatched pairs. 29872 records in RAM.
INFO 2026-06-08 08:33:14 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr16:21,404,024
INFO 2026-06-08 08:33:14 MarkDuplicates Tracking 323473 as yet unmatched pairs. 29911 records in RAM.
INFO 2026-06-08 08:33:15 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr16:21,464,789
INFO 2026-06-08 08:33:15 MarkDuplicates Tracking 323207 as yet unmatched pairs. 29619 records in RAM.
INFO 2026-06-08 08:33:17 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr16:21,849,990
INFO 2026-06-08 08:33:17 MarkDuplicates Tracking 322576 as yet unmatched pairs. 28970 records in RAM.
INFO 2026-06-08 08:33:18 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr16:22,485,846
INFO 2026-06-08 08:33:18 MarkDuplicates Tracking 321906 as yet unmatched pairs. 28271 records in RAM.
INFO 2026-06-08 08:33:19 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,864
INFO 2026-06-08 08:33:19 MarkDuplicates Tracking 322901 as yet unmatched pairs. 29254 records in RAM.
INFO 2026-06-08 08:33:21 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr16:24,790,163
INFO 2026-06-08 08:33:21 MarkDuplicates Tracking 320859 as yet unmatched pairs. 27169 records in RAM.
INFO 2026-06-08 08:33:22 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr16:28,482,363
INFO 2026-06-08 08:33:22 MarkDuplicates Tracking 320054 as yet unmatched pairs. 26345 records in RAM.
INFO 2026-06-08 08:33:24 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr16:28,932,399
INFO 2026-06-08 08:33:24 MarkDuplicates Tracking 318620 as yet unmatched pairs. 24891 records in RAM.
INFO 2026-06-08 08:33:25 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr16:29,455,717
INFO 2026-06-08 08:33:25 MarkDuplicates Tracking 319799 as yet unmatched pairs. 26040 records in RAM.
INFO 2026-06-08 08:33:26 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr16:29,663,851
INFO 2026-06-08 08:33:26 MarkDuplicates Tracking 318003 as yet unmatched pairs. 24223 records in RAM.
INFO 2026-06-08 08:33:28 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 2s. Last read position: chr16:30,069,302
INFO 2026-06-08 08:33:28 MarkDuplicates Tracking 317287 as yet unmatched pairs. 23469 records in RAM.
INFO 2026-06-08 08:33:30 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr16:30,227,014
INFO 2026-06-08 08:33:30 MarkDuplicates Tracking 315162 as yet unmatched pairs. 21337 records in RAM.
INFO 2026-06-08 08:33:31 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr16:30,521,670
INFO 2026-06-08 08:33:31 MarkDuplicates Tracking 314221 as yet unmatched pairs. 20388 records in RAM.
INFO 2026-06-08 08:33:33 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 2s. Last read position: chr16:30,930,309
INFO 2026-06-08 08:33:33 MarkDuplicates Tracking 314244 as yet unmatched pairs. 20383 records in RAM.
INFO 2026-06-08 08:33:35 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr16:31,363,171
INFO 2026-06-08 08:33:35 MarkDuplicates Tracking 311667 as yet unmatched pairs. 17785 records in RAM.
INFO 2026-06-08 08:33:37 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr16:50,711,777
INFO 2026-06-08 08:33:37 MarkDuplicates Tracking 310433 as yet unmatched pairs. 16491 records in RAM.
INFO 2026-06-08 08:33:38 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr16:57,026,299
INFO 2026-06-08 08:33:38 MarkDuplicates Tracking 310224 as yet unmatched pairs. 16228 records in RAM.
INFO 2026-06-08 08:33:40 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr16:58,558,617
INFO 2026-06-08 08:33:40 MarkDuplicates Tracking 308480 as yet unmatched pairs. 14460 records in RAM.
INFO 2026-06-08 08:33:41 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr16:67,611,398
INFO 2026-06-08 08:33:41 MarkDuplicates Tracking 306892 as yet unmatched pairs. 12815 records in RAM.
INFO 2026-06-08 08:33:43 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr16:68,315,939
INFO 2026-06-08 08:33:43 MarkDuplicates Tracking 305396 as yet unmatched pairs. 11279 records in RAM.
INFO 2026-06-08 08:33:44 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr16:70,251,176
INFO 2026-06-08 08:33:44 MarkDuplicates Tracking 305014 as yet unmatched pairs. 10862 records in RAM.
INFO 2026-06-08 08:33:46 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr16:71,922,668
INFO 2026-06-08 08:33:46 MarkDuplicates Tracking 303407 as yet unmatched pairs. 9226 records in RAM.
INFO 2026-06-08 08:33:47 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr16:77,212,820
INFO 2026-06-08 08:33:47 MarkDuplicates Tracking 301817 as yet unmatched pairs. 7588 records in RAM.
INFO 2026-06-08 08:33:49 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr16:84,657,201
INFO 2026-06-08 08:33:49 MarkDuplicates Tracking 300941 as yet unmatched pairs. 6658 records in RAM.
INFO 2026-06-08 08:33:51 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr16:87,841,144
INFO 2026-06-08 08:33:51 MarkDuplicates Tracking 300400 as yet unmatched pairs. 6068 records in RAM.
INFO 2026-06-08 08:33:52 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr16:88,733,382
INFO 2026-06-08 08:33:52 MarkDuplicates Tracking 297840 as yet unmatched pairs. 3461 records in RAM.
INFO 2026-06-08 08:33:54 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr16:89,508,536
INFO 2026-06-08 08:33:54 MarkDuplicates Tracking 296353 as yet unmatched pairs. 1914 records in RAM.
INFO 2026-06-08 08:33:56 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr16:90,040,463
INFO 2026-06-08 08:33:56 MarkDuplicates Tracking 294570 as yet unmatched pairs. 100 records in RAM.
INFO 2026-06-08 08:33:58 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 2s. Last read position: chr17:1,650,801
INFO 2026-06-08 08:33:58 MarkDuplicates Tracking 294048 as yet unmatched pairs. 50176 records in RAM.
INFO 2026-06-08 08:34:01 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 2s. Last read position: chr17:2,692,388
INFO 2026-06-08 08:34:01 MarkDuplicates Tracking 292353 as yet unmatched pairs. 48452 records in RAM.
INFO 2026-06-08 08:34:02 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr17:4,671,826
INFO 2026-06-08 08:34:02 MarkDuplicates Tracking 291523 as yet unmatched pairs. 47612 records in RAM.
INFO 2026-06-08 08:34:04 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr17:5,381,394
INFO 2026-06-08 08:34:04 MarkDuplicates Tracking 289882 as yet unmatched pairs. 45936 records in RAM.
INFO 2026-06-08 08:34:06 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr17:7,257,007
INFO 2026-06-08 08:34:06 MarkDuplicates Tracking 288683 as yet unmatched pairs. 44702 records in RAM.
INFO 2026-06-08 08:34:07 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr17:7,574,726
INFO 2026-06-08 08:34:07 MarkDuplicates Tracking 287660 as yet unmatched pairs. 43644 records in RAM.
INFO 2026-06-08 08:34:09 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr17:8,149,770
INFO 2026-06-08 08:34:09 MarkDuplicates Tracking 285836 as yet unmatched pairs. 41763 records in RAM.
INFO 2026-06-08 08:34:10 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr17:16,032,203
INFO 2026-06-08 08:34:10 MarkDuplicates Tracking 284687 as yet unmatched pairs. 40579 records in RAM.
INFO 2026-06-08 08:34:12 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr17:17,213,812
INFO 2026-06-08 08:34:12 MarkDuplicates Tracking 283466 as yet unmatched pairs. 39329 records in RAM.
INFO 2026-06-08 08:34:14 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr17:18,731,068
INFO 2026-06-08 08:34:14 MarkDuplicates Tracking 281874 as yet unmatched pairs. 37713 records in RAM.
INFO 2026-06-08 08:34:15 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr17:27,605,723
INFO 2026-06-08 08:34:15 MarkDuplicates Tracking 281301 as yet unmatched pairs. 37107 records in RAM.
INFO 2026-06-08 08:34:17 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr17:28,690,971
INFO 2026-06-08 08:34:17 MarkDuplicates Tracking 280281 as yet unmatched pairs. 36066 records in RAM.
INFO 2026-06-08 08:34:18 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr17:29,631,506
INFO 2026-06-08 08:34:18 MarkDuplicates Tracking 278675 as yet unmatched pairs. 34441 records in RAM.
INFO 2026-06-08 08:34:20 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr17:31,993,991
INFO 2026-06-08 08:34:20 MarkDuplicates Tracking 278390 as yet unmatched pairs. 34094 records in RAM.
INFO 2026-06-08 08:34:22 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 2s. Last read position: chr17:35,650,677
INFO 2026-06-08 08:34:22 MarkDuplicates Tracking 276784 as yet unmatched pairs. 32468 records in RAM.
INFO 2026-06-08 08:34:24 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 2s. Last read position: chr17:36,953,120
INFO 2026-06-08 08:34:24 MarkDuplicates Tracking 275518 as yet unmatched pairs. 31197 records in RAM.
INFO 2026-06-08 08:34:26 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr17:38,462,925
INFO 2026-06-08 08:34:26 MarkDuplicates Tracking 275016 as yet unmatched pairs. 30655 records in RAM.
INFO 2026-06-08 08:34:27 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr17:39,408,400
INFO 2026-06-08 08:34:27 MarkDuplicates Tracking 273667 as yet unmatched pairs. 29289 records in RAM.
INFO 2026-06-08 08:34:29 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr17:40,318,356
INFO 2026-06-08 08:34:29 MarkDuplicates Tracking 272247 as yet unmatched pairs. 27863 records in RAM.
INFO 2026-06-08 08:34:30 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr17:42,207,572
INFO 2026-06-08 08:34:30 MarkDuplicates Tracking 271230 as yet unmatched pairs. 26833 records in RAM.
INFO 2026-06-08 08:34:32 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr17:42,695,590
INFO 2026-06-08 08:34:32 MarkDuplicates Tracking 270222 as yet unmatched pairs. 25803 records in RAM.
INFO 2026-06-08 08:34:34 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr17:44,178,323
INFO 2026-06-08 08:34:34 MarkDuplicates Tracking 268457 as yet unmatched pairs. 24027 records in RAM.
INFO 2026-06-08 08:34:35 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr17:45,243,292
INFO 2026-06-08 08:34:35 MarkDuplicates Tracking 267679 as yet unmatched pairs. 23235 records in RAM.
INFO 2026-06-08 08:34:37 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr17:46,649,899
INFO 2026-06-08 08:34:37 MarkDuplicates Tracking 266154 as yet unmatched pairs. 21694 records in RAM.
INFO 2026-06-08 08:34:39 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr17:48,057,410
INFO 2026-06-08 08:34:39 MarkDuplicates Tracking 266106 as yet unmatched pairs. 21631 records in RAM.
INFO 2026-06-08 08:34:40 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,095
INFO 2026-06-08 08:34:40 MarkDuplicates Tracking 264161 as yet unmatched pairs. 19664 records in RAM.
INFO 2026-06-08 08:34:42 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr17:57,839,807
INFO 2026-06-08 08:34:42 MarkDuplicates Tracking 262574 as yet unmatched pairs. 18063 records in RAM.
INFO 2026-06-08 08:34:44 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr17:59,681,411
INFO 2026-06-08 08:34:44 MarkDuplicates Tracking 263224 as yet unmatched pairs. 18701 records in RAM.
INFO 2026-06-08 08:34:45 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr17:62,664,722
INFO 2026-06-08 08:34:45 MarkDuplicates Tracking 260516 as yet unmatched pairs. 15957 records in RAM.
INFO 2026-06-08 08:34:47 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr17:64,504,732
INFO 2026-06-08 08:34:47 MarkDuplicates Tracking 260087 as yet unmatched pairs. 15487 records in RAM.
INFO 2026-06-08 08:34:49 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr17:68,522,796
INFO 2026-06-08 08:34:49 MarkDuplicates Tracking 259139 as yet unmatched pairs. 14528 records in RAM.
INFO 2026-06-08 08:34:50 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr17:75,136,145
INFO 2026-06-08 08:34:50 MarkDuplicates Tracking 257522 as yet unmatched pairs. 12888 records in RAM.
INFO 2026-06-08 08:34:52 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr17:75,843,068
INFO 2026-06-08 08:34:52 MarkDuplicates Tracking 256229 as yet unmatched pairs. 11566 records in RAM.
INFO 2026-06-08 08:34:53 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr17:77,154,939
INFO 2026-06-08 08:34:53 MarkDuplicates Tracking 254225 as yet unmatched pairs. 9545 records in RAM.
INFO 2026-06-08 08:34:55 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr17:78,137,915
INFO 2026-06-08 08:34:55 MarkDuplicates Tracking 253942 as yet unmatched pairs. 9216 records in RAM.
INFO 2026-06-08 08:34:56 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr17:80,217,086
INFO 2026-06-08 08:34:56 MarkDuplicates Tracking 251736 as yet unmatched pairs. 6977 records in RAM.
INFO 2026-06-08 08:34:58 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr17:80,393,358
INFO 2026-06-08 08:34:58 MarkDuplicates Tracking 250434 as yet unmatched pairs. 5608 records in RAM.
INFO 2026-06-08 08:35:00 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr17:81,696,241
INFO 2026-06-08 08:35:00 MarkDuplicates Tracking 248680 as yet unmatched pairs. 3807 records in RAM.
INFO 2026-06-08 08:35:02 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr17:82,057,078
INFO 2026-06-08 08:35:02 MarkDuplicates Tracking 246933 as yet unmatched pairs. 2051 records in RAM.
INFO 2026-06-08 08:35:04 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 2s. Last read position: chr17:82,586,144
INFO 2026-06-08 08:35:04 MarkDuplicates Tracking 245470 as yet unmatched pairs. 567 records in RAM.
INFO 2026-06-08 08:35:06 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr18:9,119,557
INFO 2026-06-08 08:35:06 MarkDuplicates Tracking 244342 as yet unmatched pairs. 9332 records in RAM.
INFO 2026-06-08 08:35:08 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr18:20,955,197
INFO 2026-06-08 08:35:08 MarkDuplicates Tracking 243169 as yet unmatched pairs. 8116 records in RAM.
INFO 2026-06-08 08:35:09 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr18:32,124,788
INFO 2026-06-08 08:35:09 MarkDuplicates Tracking 241892 as yet unmatched pairs. 6828 records in RAM.
INFO 2026-06-08 08:35:11 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr18:48,690,459
INFO 2026-06-08 08:35:11 MarkDuplicates Tracking 240942 as yet unmatched pairs. 5837 records in RAM.
INFO 2026-06-08 08:37:23 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:16:40s. Time for last 1,000,000: 132s. Last read position: chr18:57,668,442
INFO 2026-06-08 08:37:23 MarkDuplicates Tracking 239810 as yet unmatched pairs. 4685 records in RAM.
INFO 2026-06-08 08:37:25 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:16:42s. Time for last 1,000,000: 1s. Last read position: chr18:63,266,649
INFO 2026-06-08 08:37:25 MarkDuplicates Tracking 240574 as yet unmatched pairs. 5428 records in RAM.
INFO 2026-06-08 08:37:27 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:16:44s. Time for last 1,000,000: 1s. Last read position: chr18:74,508,859
INFO 2026-06-08 08:37:27 MarkDuplicates Tracking 237307 as yet unmatched pairs. 2129 records in RAM.
INFO 2026-06-08 08:37:29 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:16:46s. Time for last 1,000,000: 2s. Last read position: chr19:579,500
INFO 2026-06-08 08:37:29 MarkDuplicates Tracking 236645 as yet unmatched pairs. 74022 records in RAM.
INFO 2026-06-08 08:37:31 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 1s. Last read position: chr19:1,014,438
INFO 2026-06-08 08:37:31 MarkDuplicates Tracking 233755 as yet unmatched pairs. 71128 records in RAM.
INFO 2026-06-08 08:37:32 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:16:49s. Time for last 1,000,000: 1s. Last read position: chr19:1,206,943
INFO 2026-06-08 08:37:32 MarkDuplicates Tracking 231923 as yet unmatched pairs. 69280 records in RAM.
INFO 2026-06-08 08:37:34 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:16:51s. Time for last 1,000,000: 1s. Last read position: chr19:1,599,477
INFO 2026-06-08 08:37:34 MarkDuplicates Tracking 232169 as yet unmatched pairs. 69508 records in RAM.
INFO 2026-06-08 08:37:35 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 1s. Last read position: chr19:2,043,551
INFO 2026-06-08 08:37:35 MarkDuplicates Tracking 228433 as yet unmatched pairs. 65749 records in RAM.
INFO 2026-06-08 08:37:37 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:16:54s. Time for last 1,000,000: 1s. Last read position: chr19:2,344,578
INFO 2026-06-08 08:37:37 MarkDuplicates Tracking 226713 as yet unmatched pairs. 64015 records in RAM.
INFO 2026-06-08 08:37:39 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:16:56s. Time for last 1,000,000: 1s. Last read position: chr19:3,543,849
INFO 2026-06-08 08:37:39 MarkDuplicates Tracking 224814 as yet unmatched pairs. 62105 records in RAM.
INFO 2026-06-08 08:37:40 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 1s. Last read position: chr19:4,428,740
INFO 2026-06-08 08:37:40 MarkDuplicates Tracking 222708 as yet unmatched pairs. 59982 records in RAM.
INFO 2026-06-08 08:37:42 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 1s. Last read position: chr19:5,649,113
INFO 2026-06-08 08:37:42 MarkDuplicates Tracking 221331 as yet unmatched pairs. 58582 records in RAM.
INFO 2026-06-08 08:37:44 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 2s. Last read position: chr19:6,452,352
INFO 2026-06-08 08:37:44 MarkDuplicates Tracking 219981 as yet unmatched pairs. 57216 records in RAM.
INFO 2026-06-08 08:37:46 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 1s. Last read position: chr19:7,611,905
INFO 2026-06-08 08:37:46 MarkDuplicates Tracking 218025 as yet unmatched pairs. 55253 records in RAM.
INFO 2026-06-08 08:37:47 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:04s. Time for last 1,000,000: 1s. Last read position: chr19:8,486,129
INFO 2026-06-08 08:37:47 MarkDuplicates Tracking 219298 as yet unmatched pairs. 56524 records in RAM.
INFO 2026-06-08 08:37:49 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:06s. Time for last 1,000,000: 1s. Last read position: chr19:10,258,655
INFO 2026-06-08 08:37:49 MarkDuplicates Tracking 215383 as yet unmatched pairs. 52592 records in RAM.
INFO 2026-06-08 08:37:51 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:08s. Time for last 1,000,000: 2s. Last read position: chr19:10,644,395
INFO 2026-06-08 08:37:51 MarkDuplicates Tracking 213646 as yet unmatched pairs. 50835 records in RAM.
INFO 2026-06-08 08:37:53 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:10s. Time for last 1,000,000: 1s. Last read position: chr19:11,353,773
INFO 2026-06-08 08:37:53 MarkDuplicates Tracking 212481 as yet unmatched pairs. 49659 records in RAM.
INFO 2026-06-08 08:37:54 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 1s. Last read position: chr19:12,710,564
INFO 2026-06-08 08:37:54 MarkDuplicates Tracking 211547 as yet unmatched pairs. 48715 records in RAM.
INFO 2026-06-08 08:37:56 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:13s. Time for last 1,000,000: 1s. Last read position: chr19:13,763,006
INFO 2026-06-08 08:37:56 MarkDuplicates Tracking 209893 as yet unmatched pairs. 47048 records in RAM.
INFO 2026-06-08 08:37:58 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:15s. Time for last 1,000,000: 1s. Last read position: chr19:14,470,203
INFO 2026-06-08 08:37:58 MarkDuplicates Tracking 208287 as yet unmatched pairs. 45430 records in RAM.
INFO 2026-06-08 08:37:59 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 1s. Last read position: chr19:15,265,199
INFO 2026-06-08 08:37:59 MarkDuplicates Tracking 207248 as yet unmatched pairs. 44379 records in RAM.
INFO 2026-06-08 08:38:00 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 1s. Last read position: chr19:16,369,442
INFO 2026-06-08 08:38:00 MarkDuplicates Tracking 204919 as yet unmatched pairs. 42044 records in RAM.
INFO 2026-06-08 08:38:02 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 1s. Last read position: chr19:17,319,566
INFO 2026-06-08 08:38:02 MarkDuplicates Tracking 203315 as yet unmatched pairs. 40438 records in RAM.
INFO 2026-06-08 08:38:04 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 1s. Last read position: chr19:18,123,243
INFO 2026-06-08 08:38:04 MarkDuplicates Tracking 202340 as yet unmatched pairs. 39451 records in RAM.
INFO 2026-06-08 08:38:05 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr19:18,745,921
INFO 2026-06-08 08:38:05 MarkDuplicates Tracking 200376 as yet unmatched pairs. 37469 records in RAM.
INFO 2026-06-08 08:38:07 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr19:19,320,925
INFO 2026-06-08 08:38:07 MarkDuplicates Tracking 199133 as yet unmatched pairs. 36207 records in RAM.
INFO 2026-06-08 08:38:08 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 1s. Last read position: chr19:23,827,966
INFO 2026-06-08 08:38:08 MarkDuplicates Tracking 197260 as yet unmatched pairs. 34314 records in RAM.
INFO 2026-06-08 08:38:10 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr19:35,155,546
INFO 2026-06-08 08:38:10 MarkDuplicates Tracking 197243 as yet unmatched pairs. 34268 records in RAM.
INFO 2026-06-08 08:38:11 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr19:35,727,485
INFO 2026-06-08 08:38:11 MarkDuplicates Tracking 195027 as yet unmatched pairs. 32048 records in RAM.
INFO 2026-06-08 08:38:14 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 2s. Last read position: chr19:38,081,928
INFO 2026-06-08 08:38:14 MarkDuplicates Tracking 193470 as yet unmatched pairs. 30475 records in RAM.
INFO 2026-06-08 08:38:17 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 2s. Last read position: chr19:38,837,459
INFO 2026-06-08 08:38:17 MarkDuplicates Tracking 192546 as yet unmatched pairs. 29541 records in RAM.
INFO 2026-06-08 08:38:18 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr19:39,433,727
INFO 2026-06-08 08:38:18 MarkDuplicates Tracking 193943 as yet unmatched pairs. 30918 records in RAM.
INFO 2026-06-08 08:38:20 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 1s. Last read position: chr19:40,279,938
INFO 2026-06-08 08:38:20 MarkDuplicates Tracking 188854 as yet unmatched pairs. 25815 records in RAM.
INFO 2026-06-08 08:38:21 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr19:41,432,294
INFO 2026-06-08 08:38:21 MarkDuplicates Tracking 187589 as yet unmatched pairs. 24541 records in RAM.
INFO 2026-06-08 08:38:23 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 1s. Last read position: chr19:42,089,898
INFO 2026-06-08 08:38:23 MarkDuplicates Tracking 186718 as yet unmatched pairs. 23663 records in RAM.
INFO 2026-06-08 08:38:24 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr19:42,273,888
INFO 2026-06-08 08:38:24 MarkDuplicates Tracking 185965 as yet unmatched pairs. 22904 records in RAM.
INFO 2026-06-08 08:38:26 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr19:42,370,231
INFO 2026-06-08 08:38:26 MarkDuplicates Tracking 183019 as yet unmatched pairs. 19957 records in RAM.
INFO 2026-06-08 08:38:27 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr19:45,067,439
INFO 2026-06-08 08:38:27 MarkDuplicates Tracking 182333 as yet unmatched pairs. 19238 records in RAM.
INFO 2026-06-08 08:38:29 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr19:45,785,803
INFO 2026-06-08 08:38:29 MarkDuplicates Tracking 180610 as yet unmatched pairs. 17478 records in RAM.
INFO 2026-06-08 08:38:30 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr19:46,782,413
INFO 2026-06-08 08:38:30 MarkDuplicates Tracking 178950 as yet unmatched pairs. 15813 records in RAM.
INFO 2026-06-08 08:38:32 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr19:47,754,729
INFO 2026-06-08 08:38:32 MarkDuplicates Tracking 176766 as yet unmatched pairs. 13619 records in RAM.
INFO 2026-06-08 08:38:33 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr19:48,922,328
INFO 2026-06-08 08:38:33 MarkDuplicates Tracking 175372 as yet unmatched pairs. 12215 records in RAM.
INFO 2026-06-08 08:38:35 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chr19:49,496,461
INFO 2026-06-08 08:38:35 MarkDuplicates Tracking 176284 as yet unmatched pairs. 13109 records in RAM.
INFO 2026-06-08 08:38:36 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr19:49,802,097
INFO 2026-06-08 08:38:36 MarkDuplicates Tracking 172751 as yet unmatched pairs. 9572 records in RAM.
INFO 2026-06-08 08:38:39 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 2s. Last read position: chr19:49,932,975
INFO 2026-06-08 08:38:39 MarkDuplicates Tracking 171818 as yet unmatched pairs. 8633 records in RAM.
INFO 2026-06-08 08:38:41 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr19:52,555,249
INFO 2026-06-08 08:38:41 MarkDuplicates Tracking 169398 as yet unmatched pairs. 6204 records in RAM.
INFO 2026-06-08 08:38:42 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr19:54,458,739
INFO 2026-06-08 08:38:42 MarkDuplicates Tracking 169357 as yet unmatched pairs. 6144 records in RAM.
INFO 2026-06-08 08:38:44 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr19:55,483,979
INFO 2026-06-08 08:38:44 MarkDuplicates Tracking 166769 as yet unmatched pairs. 3547 records in RAM.
INFO 2026-06-08 08:38:45 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr19:57,421,397
INFO 2026-06-08 08:38:45 MarkDuplicates Tracking 164727 as yet unmatched pairs. 1504 records in RAM.
INFO 2026-06-08 08:38:46 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chr19:58,549,767
INFO 2026-06-08 08:38:46 MarkDuplicates Tracking 164363 as yet unmatched pairs. 1126 records in RAM.
INFO 2026-06-08 08:38:48 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 2s. Last read position: chr20:2,838,232
INFO 2026-06-08 08:38:48 MarkDuplicates Tracking 162417 as yet unmatched pairs. 18784 records in RAM.
INFO 2026-06-08 08:38:50 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr20:5,941,082
INFO 2026-06-08 08:38:50 MarkDuplicates Tracking 160585 as yet unmatched pairs. 16949 records in RAM.
INFO 2026-06-08 08:38:51 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr20:21,331,561
INFO 2026-06-08 08:38:51 MarkDuplicates Tracking 159429 as yet unmatched pairs. 15757 records in RAM.
INFO 2026-06-08 08:38:53 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr20:32,436,999
INFO 2026-06-08 08:38:53 MarkDuplicates Tracking 158135 as yet unmatched pairs. 14461 records in RAM.
INFO 2026-06-08 08:38:54 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 1s. Last read position: chr20:35,477,948
INFO 2026-06-08 08:38:54 MarkDuplicates Tracking 156893 as yet unmatched pairs. 13213 records in RAM.
INFO 2026-06-08 08:38:56 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr20:36,920,510
INFO 2026-06-08 08:38:56 MarkDuplicates Tracking 155662 as yet unmatched pairs. 11964 records in RAM.
INFO 2026-06-08 08:38:57 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr20:41,533,053
INFO 2026-06-08 08:38:57 MarkDuplicates Tracking 154444 as yet unmatched pairs. 10727 records in RAM.
INFO 2026-06-08 08:38:59 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr20:45,894,679
INFO 2026-06-08 08:38:59 MarkDuplicates Tracking 153763 as yet unmatched pairs. 10027 records in RAM.
INFO 2026-06-08 08:39:01 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr20:48,649,451
INFO 2026-06-08 08:39:01 MarkDuplicates Tracking 152348 as yet unmatched pairs. 8607 records in RAM.
INFO 2026-06-08 08:39:02 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr20:50,891,766
INFO 2026-06-08 08:39:02 MarkDuplicates Tracking 151230 as yet unmatched pairs. 7455 records in RAM.
INFO 2026-06-08 08:39:04 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr20:58,890,594
INFO 2026-06-08 08:39:04 MarkDuplicates Tracking 149877 as yet unmatched pairs. 6099 records in RAM.
INFO 2026-06-08 08:39:06 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 2s. Last read position: chr20:62,333,229
INFO 2026-06-08 08:39:06 MarkDuplicates Tracking 147998 as yet unmatched pairs. 4209 records in RAM.
INFO 2026-06-08 08:39:08 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr20:63,562,759
INFO 2026-06-08 08:39:08 MarkDuplicates Tracking 147165 as yet unmatched pairs. 3356 records in RAM.
INFO 2026-06-08 08:39:09 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr20:63,963,838
INFO 2026-06-08 08:39:09 MarkDuplicates Tracking 144827 as yet unmatched pairs. 1008 records in RAM.
INFO 2026-06-08 08:39:11 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr21:6,119,075
INFO 2026-06-08 08:39:11 MarkDuplicates Tracking 143394 as yet unmatched pairs. 42652 records in RAM.
INFO 2026-06-08 08:39:12 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr21:8,211,879
INFO 2026-06-08 08:39:12 MarkDuplicates Tracking 142142 as yet unmatched pairs. 41385 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 0s. Last read position: chr21:8,214,440
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 141662 as yet unmatched pairs. 40905 records in RAM.
INFO 2026-06-08 08:39:14 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,055
INFO 2026-06-08 08:39:14 MarkDuplicates Tracking 139052 as yet unmatched pairs. 38287 records in RAM.
INFO 2026-06-08 08:39:15 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,856
INFO 2026-06-08 08:39:15 MarkDuplicates Tracking 146577 as yet unmatched pairs. 45782 records in RAM.
INFO 2026-06-08 08:39:17 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr21:8,217,286
INFO 2026-06-08 08:39:17 MarkDuplicates Tracking 138771 as yet unmatched pairs. 37974 records in RAM.
INFO 2026-06-08 08:39:18 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr21:8,218,696
INFO 2026-06-08 08:39:18 MarkDuplicates Tracking 131586 as yet unmatched pairs. 30786 records in RAM.
INFO 2026-06-08 08:39:19 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr21:8,256,669
INFO 2026-06-08 08:39:19 MarkDuplicates Tracking 130818 as yet unmatched pairs. 30018 records in RAM.
INFO 2026-06-08 08:39:20 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,925
INFO 2026-06-08 08:39:20 MarkDuplicates Tracking 130390 as yet unmatched pairs. 29590 records in RAM.
INFO 2026-06-08 08:39:21 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 0s. Last read position: chr21:8,389,614
INFO 2026-06-08 08:39:21 MarkDuplicates Tracking 129828 as yet unmatched pairs. 29028 records in RAM.
INFO 2026-06-08 08:39:22 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr21:8,396,480
INFO 2026-06-08 08:39:22 MarkDuplicates Tracking 128709 as yet unmatched pairs. 27909 records in RAM.
INFO 2026-06-08 08:39:23 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,068
INFO 2026-06-08 08:39:23 MarkDuplicates Tracking 128986 as yet unmatched pairs. 28186 records in RAM.
INFO 2026-06-08 08:39:24 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,882
INFO 2026-06-08 08:39:24 MarkDuplicates Tracking 129513 as yet unmatched pairs. 28711 records in RAM.
INFO 2026-06-08 08:39:26 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,222
INFO 2026-06-08 08:39:26 MarkDuplicates Tracking 121651 as yet unmatched pairs. 20844 records in RAM.
INFO 2026-06-08 08:39:27 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr21:8,435,327
INFO 2026-06-08 08:39:27 MarkDuplicates Tracking 119375 as yet unmatched pairs. 18567 records in RAM.
INFO 2026-06-08 08:39:28 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr21:8,440,285
INFO 2026-06-08 08:39:28 MarkDuplicates Tracking 118479 as yet unmatched pairs. 17671 records in RAM.
INFO 2026-06-08 08:39:29 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,940
INFO 2026-06-08 08:39:29 MarkDuplicates Tracking 118460 as yet unmatched pairs. 17652 records in RAM.
INFO 2026-06-08 08:39:31 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,353
INFO 2026-06-08 08:39:31 MarkDuplicates Tracking 115056 as yet unmatched pairs. 14247 records in RAM.
INFO 2026-06-08 08:39:32 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,148
INFO 2026-06-08 08:39:32 MarkDuplicates Tracking 115042 as yet unmatched pairs. 14233 records in RAM.
INFO 2026-06-08 08:39:33 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,562
INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 147721 as yet unmatched pairs. 46912 records in RAM.
INFO 2026-06-08 08:39:35 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr21:8,446,426
INFO 2026-06-08 08:39:35 MarkDuplicates Tracking 110081 as yet unmatched pairs. 9272 records in RAM.
INFO 2026-06-08 08:39:36 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr21:31,667,257
INFO 2026-06-08 08:39:36 MarkDuplicates Tracking 107709 as yet unmatched pairs. 6895 records in RAM.
INFO 2026-06-08 08:39:38 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr21:33,903,457
INFO 2026-06-08 08:39:38 MarkDuplicates Tracking 105875 as yet unmatched pairs. 5049 records in RAM.
INFO 2026-06-08 08:39:39 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr21:41,446,352
INFO 2026-06-08 08:39:39 MarkDuplicates Tracking 105020 as yet unmatched pairs. 4171 records in RAM.
INFO 2026-06-08 08:39:41 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr21:44,082,838
INFO 2026-06-08 08:39:41 MarkDuplicates Tracking 103726 as yet unmatched pairs. 2874 records in RAM.
INFO 2026-06-08 08:39:42 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr21:44,890,195
INFO 2026-06-08 08:39:42 MarkDuplicates Tracking 102910 as yet unmatched pairs. 2052 records in RAM.
INFO 2026-06-08 08:39:44 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 2s. Last read position: chr22:17,181,962
INFO 2026-06-08 08:39:44 MarkDuplicates Tracking 100872 as yet unmatched pairs. 24282 records in RAM.
INFO 2026-06-08 08:39:46 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr22:20,465,145
INFO 2026-06-08 08:39:46 MarkDuplicates Tracking 99450 as yet unmatched pairs. 22858 records in RAM.
INFO 2026-06-08 08:39:48 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr22:22,893,601
INFO 2026-06-08 08:39:48 MarkDuplicates Tracking 98567 as yet unmatched pairs. 21969 records in RAM.
INFO 2026-06-08 08:39:50 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr22:24,365,563
INFO 2026-06-08 08:39:50 MarkDuplicates Tracking 96989 as yet unmatched pairs. 20391 records in RAM.
INFO 2026-06-08 08:39:52 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 2s. Last read position: chr22:29,258,827
INFO 2026-06-08 08:39:52 MarkDuplicates Tracking 95817 as yet unmatched pairs. 19213 records in RAM.
INFO 2026-06-08 08:39:53 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr22:29,356,594
INFO 2026-06-08 08:39:53 MarkDuplicates Tracking 94317 as yet unmatched pairs. 17712 records in RAM.
INFO 2026-06-08 08:39:55 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr22:31,642,795
INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 92733 as yet unmatched pairs. 16127 records in RAM.
INFO 2026-06-08 08:39:57 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr22:36,296,869
INFO 2026-06-08 08:39:57 MarkDuplicates Tracking 92432 as yet unmatched pairs. 15807 records in RAM.
INFO 2026-06-08 08:39:58 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr22:37,142,438
INFO 2026-06-08 08:39:58 MarkDuplicates Tracking 91336 as yet unmatched pairs. 14695 records in RAM.
INFO 2026-06-08 08:40:00 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr22:38,143,216
INFO 2026-06-08 08:40:00 MarkDuplicates Tracking 89034 as yet unmatched pairs. 12393 records in RAM.
INFO 2026-06-08 08:40:01 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr22:39,086,344
INFO 2026-06-08 08:40:01 MarkDuplicates Tracking 87754 as yet unmatched pairs. 11103 records in RAM.
INFO 2026-06-08 08:40:03 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr22:40,511,741
INFO 2026-06-08 08:40:03 MarkDuplicates Tracking 86248 as yet unmatched pairs. 9586 records in RAM.
INFO 2026-06-08 08:40:05 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr22:41,810,281
INFO 2026-06-08 08:40:05 MarkDuplicates Tracking 85116 as yet unmatched pairs. 8434 records in RAM.
INFO 2026-06-08 08:40:06 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr22:42,214,757
INFO 2026-06-08 08:40:06 MarkDuplicates Tracking 83497 as yet unmatched pairs. 6813 records in RAM.
INFO 2026-06-08 08:40:08 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr22:46,335,954
INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 81876 as yet unmatched pairs. 5180 records in RAM.
INFO 2026-06-08 08:40:09 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr22:50,248,690
INFO 2026-06-08 08:40:09 MarkDuplicates Tracking 80476 as yet unmatched pairs. 3760 records in RAM.
INFO 2026-06-08 08:40:11 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr22:50,481,835
INFO 2026-06-08 08:40:11 MarkDuplicates Tracking 79023 as yet unmatched pairs. 2296 records in RAM.
INFO 2026-06-08 08:40:13 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chrX:1,389,254
INFO 2026-06-08 08:40:13 MarkDuplicates Tracking 78048 as yet unmatched pairs. 20742 records in RAM.
INFO 2026-06-08 08:40:14 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chrX:11,142,234
INFO 2026-06-08 08:40:14 MarkDuplicates Tracking 74920 as yet unmatched pairs. 17614 records in RAM.
INFO 2026-06-08 08:40:16 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chrX:19,836,154
INFO 2026-06-08 08:40:16 MarkDuplicates Tracking 74395 as yet unmatched pairs. 17057 records in RAM.
INFO 2026-06-08 08:40:18 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chrX:40,072,650
INFO 2026-06-08 08:40:18 MarkDuplicates Tracking 72857 as yet unmatched pairs. 15517 records in RAM.
INFO 2026-06-08 08:40:20 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 2s. Last read position: chrX:46,651,316
INFO 2026-06-08 08:40:20 MarkDuplicates Tracking 73111 as yet unmatched pairs. 15771 records in RAM.
INFO 2026-06-08 08:40:22 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chrX:48,688,902
INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 71057 as yet unmatched pairs. 13717 records in RAM.
INFO 2026-06-08 08:40:23 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chrX:51,901,594
INFO 2026-06-08 08:40:23 MarkDuplicates Tracking 69234 as yet unmatched pairs. 11893 records in RAM.
INFO 2026-06-08 08:40:25 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chrX:53,604,751
INFO 2026-06-08 08:40:25 MarkDuplicates Tracking 68750 as yet unmatched pairs. 11408 records in RAM.
INFO 2026-06-08 08:40:27 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chrX:65,739,734
INFO 2026-06-08 08:40:27 MarkDuplicates Tracking 67339 as yet unmatched pairs. 9997 records in RAM.
INFO 2026-06-08 08:40:28 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chrX:71,554,574
INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 67358 as yet unmatched pairs. 10014 records in RAM.
INFO 2026-06-08 08:40:30 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chrX:77,681,530
INFO 2026-06-08 08:40:30 MarkDuplicates Tracking 66196 as yet unmatched pairs. 8852 records in RAM.
INFO 2026-06-08 08:40:31 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chrX:101,354,545
INFO 2026-06-08 08:40:31 MarkDuplicates Tracking 64380 as yet unmatched pairs. 7035 records in RAM.
INFO 2026-06-08 08:40:33 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chrX:119,574,920
INFO 2026-06-08 08:40:33 MarkDuplicates Tracking 63241 as yet unmatched pairs. 5894 records in RAM.
INFO 2026-06-08 08:40:34 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chrX:130,156,524
INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 62297 as yet unmatched pairs. 4938 records in RAM.
INFO 2026-06-08 08:40:36 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chrX:150,850,929
INFO 2026-06-08 08:40:36 MarkDuplicates Tracking 61023 as yet unmatched pairs. 3663 records in RAM.
INFO 2026-06-08 08:40:38 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chrX:154,019,489
INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 61173 as yet unmatched pairs. 3812 records in RAM.
INFO 2026-06-08 08:40:39 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chrX:154,465,726
INFO 2026-06-08 08:40:39 MarkDuplicates Tracking 58269 as yet unmatched pairs. 908 records in RAM.
INFO 2026-06-08 08:40:40 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chrY:13,220,204
INFO 2026-06-08 08:40:40 MarkDuplicates Tracking 57044 as yet unmatched pairs. 495 records in RAM.
INFO 2026-06-08 08:40:42 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chrM:11,657
INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 56567 as yet unmatched pairs. 507 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: GL000220.1:111,283
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 55381 as yet unmatched pairs. 7669 records in RAM.
INFO 2026-06-08 08:40:45 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: GL000220.1:113,075
INFO 2026-06-08 08:40:45 MarkDuplicates Tracking 55105 as yet unmatched pairs. 7393 records in RAM.
INFO 2026-06-08 08:40:46 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 0s. Last read position: GL000220.1:115,455
INFO 2026-06-08 08:40:46 MarkDuplicates Tracking 56479 as yet unmatched pairs. 8767 records in RAM.
INFO 2026-06-08 08:40:47 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,318
INFO 2026-06-08 08:40:47 MarkDuplicates Tracking 48150 as yet unmatched pairs. 437 records in RAM.
INFO 2026-06-08 08:40:48 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,653
INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 48197 as yet unmatched pairs. 484 records in RAM.
INFO 2026-06-08 08:40:49 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: GL000220.1:151,497
INFO 2026-06-08 08:40:49 MarkDuplicates Tracking 48214 as yet unmatched pairs. 501 records in RAM.
INFO 2026-06-08 08:40:50 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: GL000220.1:156,449
INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 48162 as yet unmatched pairs. 449 records in RAM.
INFO 2026-06-08 08:40:51 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 0s. Last read position: GL000220.1:158,114
INFO 2026-06-08 08:40:51 MarkDuplicates Tracking 48123 as yet unmatched pairs. 410 records in RAM.
INFO 2026-06-08 08:40:52 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: GL000220.1:159,527
INFO 2026-06-08 08:40:52 MarkDuplicates Tracking 47843 as yet unmatched pairs. 130 records in RAM.
INFO 2026-06-08 08:40:53 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 0s. Last read position: GL000220.1:160,322
INFO 2026-06-08 08:40:53 MarkDuplicates Tracking 47813 as yet unmatched pairs. 100 records in RAM.
INFO 2026-06-08 08:40:54 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: GL000220.1:160,772
INFO 2026-06-08 08:40:54 MarkDuplicates Tracking 47716 as yet unmatched pairs. 3 records in RAM.
INFO 2026-06-08 08:40:56 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: KI270733.1:126,620
INFO 2026-06-08 08:40:56 MarkDuplicates Tracking 47495 as yet unmatched pairs. 47476 records in RAM.
INFO 2026-06-08 08:40:58 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: KI270733.1:129,605
INFO 2026-06-08 08:40:58 MarkDuplicates Tracking 46956 as yet unmatched pairs. 46937 records in RAM.
INFO 2026-06-08 08:40:59 MarkDuplicates Read 641,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: KI270733.1:129,923
INFO 2026-06-08 08:40:59 MarkDuplicates Tracking 48655 as yet unmatched pairs. 48636 records in RAM.
INFO 2026-06-08 08:41:01 MarkDuplicates Read 642,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 2s. Last read position: KI270733.1:131,340
INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 40942 as yet unmatched pairs. 40923 records in RAM.
INFO 2026-06-08 08:41:03 MarkDuplicates Read 643,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,172
INFO 2026-06-08 08:41:03 MarkDuplicates Tracking 37069 as yet unmatched pairs. 37050 records in RAM.
INFO 2026-06-08 08:41:04 MarkDuplicates Read 644,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,515
INFO 2026-06-08 08:41:04 MarkDuplicates Tracking 39123 as yet unmatched pairs. 39104 records in RAM.
INFO 2026-06-08 08:41:05 MarkDuplicates Read 645,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: KI270733.1:169,013
INFO 2026-06-08 08:41:05 MarkDuplicates Tracking 31399 as yet unmatched pairs. 31380 records in RAM.
INFO 2026-06-08 08:41:07 MarkDuplicates Read 646,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: KI270733.1:173,218
INFO 2026-06-08 08:41:07 MarkDuplicates Tracking 34353 as yet unmatched pairs. 34334 records in RAM.
INFO 2026-06-08 08:41:08 MarkDuplicates Read 647,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: KI270733.1:174,692
INFO 2026-06-08 08:41:08 MarkDuplicates Tracking 85084 as yet unmatched pairs. 85065 records in RAM.
INFO 2026-06-08 08:41:10 MarkDuplicates Read 648,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: KI270733.1:175,009
INFO 2026-06-08 08:41:10 MarkDuplicates Tracking 8179 as yet unmatched pairs. 8160 records in RAM.
INFO 2026-06-08 08:41:11 MarkDuplicates Read 649,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,690
INFO 2026-06-08 08:41:11 MarkDuplicates Tracking 320 as yet unmatched pairs. 301 records in RAM.
INFO 2026-06-08 08:41:12 MarkDuplicates Read 650,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,252
INFO 2026-06-08 08:41:12 MarkDuplicates Tracking 146 as yet unmatched pairs. 127 records in RAM.
INFO 2026-06-08 08:41:13 MarkDuplicates Read 651,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,677
INFO 2026-06-08 08:41:13 MarkDuplicates Tracking 54 as yet unmatched pairs. 35 records in RAM.
INFO 2026-06-08 08:41:14 MarkDuplicates Read 651682046 records. 0 pairs never matched.
INFO 2026-06-08 08:41:54 MarkDuplicates After buildSortedReadEndLists freeMemory: 204138224; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:41:54 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:41:58 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:41:58 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1589
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,280
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1884
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,562
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 2614
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,057
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,013
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1929
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,973
INFO 2026-06-08 08:42:24 OpticalDuplicateFinder Large duplicate set. size = 1175
INFO 2026-06-08 08:42:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,146
INFO 2026-06-08 08:42:24 OpticalDuplicateFinder Large duplicate set. size = 1470
INFO 2026-06-08 08:42:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,020
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1210
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,533
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1724
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,411
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1356
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,953
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1393
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,585
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1075
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,935
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1041
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,679
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1303
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,185
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1841
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,448
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1526
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,168
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1055
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,873
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1278
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,245
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1128
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,600
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1080
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,596
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1262
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,670
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1836
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,550
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1535
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,814
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1001
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,957
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1228
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,739
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1124
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,407
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1023
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,164
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1323
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,346
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1118
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,323
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1449
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,941
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1991
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,784
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1657
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,191
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1096
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,534
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1534
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,700
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 2110
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,670
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,572
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1718
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,767
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1517
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,014
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1937
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,550
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1557
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,669
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,454
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1029
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,700
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1455
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,672
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1026
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,657
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder Large duplicate set. size = 1033
INFO 2026-06-08 08:42:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,672
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 1204
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,297
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 1053
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,067
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 2170
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,546
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,684
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 1052
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,784
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 1096
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,969
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 3257
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,276
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,423
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,302
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 1237
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,405
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 1772
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,162
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 1675
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,353
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 2774
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,283
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,238
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 3766
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,907
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,170
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,778
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 2994
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,534
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,980
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 1210
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,140
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 1016
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,908
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 1701
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,071
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 1431
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,620
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 1986
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,092
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 1719
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,924
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 1170
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,251
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 1182
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,547
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 1030
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,444
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 1259
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,028
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 1066
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,501
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 1069
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,786
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 1289
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,911
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 1358
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,625
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 1293
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,771
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder Large duplicate set. size = 1122
INFO 2026-06-08 08:42:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,148
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder Large duplicate set. size = 1077
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,668
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder Large duplicate set. size = 1233
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,201
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder Large duplicate set. size = 1347
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,405
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder Large duplicate set. size = 1144
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,333
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder Large duplicate set. size = 2088
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,515
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,910
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder Large duplicate set. size = 1297
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,139
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder Large duplicate set. size = 1306
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,237
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder Large duplicate set. size = 1117
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,253
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder Large duplicate set. size = 1456
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,414
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder Large duplicate set. size = 1663
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,860
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder Large duplicate set. size = 1327
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,379
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder Large duplicate set. size = 1212
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,323
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder Large duplicate set. size = 2393
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,471
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,491
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder Large duplicate set. size = 1563
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,848
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder Large duplicate set. size = 1005
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,692
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder Large duplicate set. size = 1139
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,045
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder Large duplicate set. size = 1678
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,435
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder Large duplicate set. size = 1103
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,377
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder Large duplicate set. size = 1014
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,832
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder Large duplicate set. size = 1152
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,175
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder Large duplicate set. size = 1088
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,163
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder Large duplicate set. size = 2298
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,754
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,128
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder Large duplicate set. size = 1554
INFO 2026-06-08 08:42:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,812
INFO 2026-06-08 08:43:34 OpticalDuplicateFinder Large duplicate set. size = 1059
INFO 2026-06-08 08:43:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,424
INFO 2026-06-08 08:43:34 OpticalDuplicateFinder Large duplicate set. size = 1228
INFO 2026-06-08 08:43:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,863
INFO 2026-06-08 08:43:34 OpticalDuplicateFinder Large duplicate set. size = 1289
INFO 2026-06-08 08:43:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,369
INFO 2026-06-08 08:43:34 OpticalDuplicateFinder Large duplicate set. size = 1208
INFO 2026-06-08 08:43:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,820
INFO 2026-06-08 08:43:34 OpticalDuplicateFinder Large duplicate set. size = 1469
INFO 2026-06-08 08:43:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,207
INFO 2026-06-08 08:43:34 OpticalDuplicateFinder Large duplicate set. size = 1012
INFO 2026-06-08 08:43:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,595
INFO 2026-06-08 08:43:34 OpticalDuplicateFinder Large duplicate set. size = 1580
INFO 2026-06-08 08:43:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,834
INFO 2026-06-08 08:43:34 OpticalDuplicateFinder Large duplicate set. size = 1332
INFO 2026-06-08 08:43:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,300
INFO 2026-06-08 08:43:34 OpticalDuplicateFinder Large duplicate set. size = 1500
INFO 2026-06-08 08:43:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,943
INFO 2026-06-08 08:43:34 OpticalDuplicateFinder Large duplicate set. size = 1217
INFO 2026-06-08 08:43:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,492
INFO 2026-06-08 08:43:35 OpticalDuplicateFinder Large duplicate set. size = 3156
INFO 2026-06-08 08:43:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,348
INFO 2026-06-08 08:43:35 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,515
INFO 2026-06-08 08:43:35 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,943
INFO 2026-06-08 08:43:35 OpticalDuplicateFinder Large duplicate set. size = 1803
INFO 2026-06-08 08:43:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,416
INFO 2026-06-08 08:43:35 OpticalDuplicateFinder Large duplicate set. size = 1232
INFO 2026-06-08 08:43:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,858
INFO 2026-06-08 08:43:40 OpticalDuplicateFinder Large duplicate set. size = 1001
INFO 2026-06-08 08:43:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,903
INFO 2026-06-08 08:43:40 OpticalDuplicateFinder Large duplicate set. size = 1015
INFO 2026-06-08 08:43:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,298
INFO 2026-06-08 08:43:40 OpticalDuplicateFinder Large duplicate set. size = 2414
INFO 2026-06-08 08:43:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,161
INFO 2026-06-08 08:43:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,148
INFO 2026-06-08 08:43:40 OpticalDuplicateFinder Large duplicate set. size = 1376
INFO 2026-06-08 08:43:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,392
INFO 2026-06-08 08:43:41 OpticalDuplicateFinder Large duplicate set. size = 1104
INFO 2026-06-08 08:43:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,853
INFO 2026-06-08 08:43:41 OpticalDuplicateFinder Large duplicate set. size = 1010
INFO 2026-06-08 08:43:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,218
INFO 2026-06-08 08:43:41 OpticalDuplicateFinder Large duplicate set. size = 1045
INFO 2026-06-08 08:43:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,299
INFO 2026-06-08 08:43:41 OpticalDuplicateFinder Large duplicate set. size = 1208
INFO 2026-06-08 08:43:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,984
INFO 2026-06-08 08:43:41 OpticalDuplicateFinder Large duplicate set. size = 1278
INFO 2026-06-08 08:43:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,619
INFO 2026-06-08 08:43:41 OpticalDuplicateFinder Large duplicate set. size = 1914
INFO 2026-06-08 08:43:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,829
INFO 2026-06-08 08:43:41 OpticalDuplicateFinder Large duplicate set. size = 2380
INFO 2026-06-08 08:43:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,548
INFO 2026-06-08 08:43:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,828
INFO 2026-06-08 08:43:41 OpticalDuplicateFinder Large duplicate set. size = 1334
INFO 2026-06-08 08:43:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,520
INFO 2026-06-08 08:43:41 OpticalDuplicateFinder Large duplicate set. size = 1244
INFO 2026-06-08 08:43:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,432
INFO 2026-06-08 08:43:41 OpticalDuplicateFinder Large duplicate set. size = 1191
INFO 2026-06-08 08:43:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,524
INFO 2026-06-08 08:43:41 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:43:41 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:44:50 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:44:55 MarkDuplicates After generateDuplicateIndexes freeMemory: 203894368; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:44:55 MarkDuplicates Marking 369031780 records as duplicates.
INFO 2026-06-08 08:44:55 MarkDuplicates Found 27342824 optical duplicate clusters.
INFO 2026-06-08 08:44:55 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:45:12 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:24,929,681
INFO 2026-06-08 08:45:28 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:33s. Time for last 10,000,000: 16s. Last read position: chr1:46,683,343
INFO 2026-06-08 08:45:45 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:49s. Time for last 10,000,000: 16s. Last read position: chr1:146,106,572
INFO 2026-06-08 08:46:01 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:05s. Time for last 10,000,000: 16s. Last read position: chr1:160,292,011
INFO 2026-06-08 08:46:18 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:22s. Time for last 10,000,000: 16s. Last read position: chr1:213,008,278
INFO 2026-06-08 08:46:34 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:39s. Time for last 10,000,000: 16s. Last read position: chr2:32,251,239
INFO 2026-06-08 08:46:50 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:55s. Time for last 10,000,000: 15s. Last read position: chr2:70,993,766
INFO 2026-06-08 08:47:06 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:11s. Time for last 10,000,000: 16s. Last read position: chr2:148,657,001
INFO 2026-06-08 08:47:23 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:27s. Time for last 10,000,000: 16s. Last read position: chr2:222,521,919
INFO 2026-06-08 08:47:39 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:43s. Time for last 10,000,000: 16s. Last read position: chr3:32,790,364
INFO 2026-06-08 08:47:55 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:59s. Time for last 10,000,000: 16s. Last read position: chr3:63,838,444
INFO 2026-06-08 08:48:11 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:15s. Time for last 10,000,000: 16s. Last read position: chr3:171,426,208
INFO 2026-06-08 08:48:27 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:31s. Time for last 10,000,000: 16s. Last read position: chr4:39,723,979
INFO 2026-06-08 08:48:43 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:48s. Time for last 10,000,000: 16s. Last read position: chr4:168,262,732
INFO 2026-06-08 08:49:00 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:04s. Time for last 10,000,000: 16s. Last read position: chr5:80,894,285
INFO 2026-06-08 08:49:16 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:20s. Time for last 10,000,000: 16s. Last read position: chr5:150,405,153
INFO 2026-06-08 08:49:33 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:37s. Time for last 10,000,000: 16s. Last read position: chr6:2,221,939
INFO 2026-06-08 08:49:48 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:53s. Time for last 10,000,000: 15s. Last read position: chr6:31,962,753
INFO 2026-06-08 08:50:04 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:09s. Time for last 10,000,000: 15s. Last read position: chr6:56,836,540
INFO 2026-06-08 08:50:21 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:25s. Time for last 10,000,000: 16s. Last read position: chr6:157,405,395
INFO 2026-06-08 08:50:37 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:41s. Time for last 10,000,000: 16s. Last read position: chr7:40,744,073
INFO 2026-06-08 08:50:53 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:57s. Time for last 10,000,000: 16s. Last read position: chr7:100,094,209
INFO 2026-06-08 08:51:09 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:14s. Time for last 10,000,000: 16s. Last read position: chr7:143,755,873
INFO 2026-06-08 08:51:27 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:31s. Time for last 10,000,000: 17s. Last read position: chr8:47,969,885
INFO 2026-06-08 08:51:43 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:48s. Time for last 10,000,000: 16s. Last read position: chr8:143,804,647
INFO 2026-06-08 08:52:00 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:04s. Time for last 10,000,000: 16s. Last read position: chr9:37,020,731
INFO 2026-06-08 08:52:16 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:20s. Time for last 10,000,000: 16s. Last read position: chr9:128,353,428
INFO 2026-06-08 08:52:32 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:36s. Time for last 10,000,000: 16s. Last read position: chr10:20,149,474
INFO 2026-06-08 08:52:49 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:53s. Time for last 10,000,000: 16s. Last read position: chr10:93,901,227
INFO 2026-06-08 08:53:05 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:09s. Time for last 10,000,000: 16s. Last read position: chr11:2,945,598
INFO 2026-06-08 08:53:21 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:25s. Time for last 10,000,000: 16s. Last read position: chr11:62,611,106
INFO 2026-06-08 08:53:37 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:41s. Time for last 10,000,000: 15s. Last read position: chr11:68,476,037
INFO 2026-06-08 08:53:53 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:57s. Time for last 10,000,000: 16s. Last read position: chr12:318,135
INFO 2026-06-08 08:54:09 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:14s. Time for last 10,000,000: 16s. Last read position: chr12:49,050,152
INFO 2026-06-08 08:54:26 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:30s. Time for last 10,000,000: 16s. Last read position: chr12:69,586,313
INFO 2026-06-08 08:54:42 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:46s. Time for last 10,000,000: 16s. Last read position: chr12:122,602,617
INFO 2026-06-08 08:54:58 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:03s. Time for last 10,000,000: 16s. Last read position: chr13:77,326,649
INFO 2026-06-08 08:55:14 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:19s. Time for last 10,000,000: 16s. Last read position: chr14:49,586,773
INFO 2026-06-08 08:55:31 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:35s. Time for last 10,000,000: 16s. Last read position: chr14:90,318,035
INFO 2026-06-08 08:55:47 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:51s. Time for last 10,000,000: 16s. Last read position: chr15:40,419,273
INFO 2026-06-08 08:56:03 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:08s. Time for last 10,000,000: 16s. Last read position: chr15:74,417,416
INFO 2026-06-08 08:56:19 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:24s. Time for last 10,000,000: 16s. Last read position: chr16:2,530,453
INFO 2026-06-08 08:56:36 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:40s. Time for last 10,000,000: 16s. Last read position: chr16:21,464,789
INFO 2026-06-08 08:56:52 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:56s. Time for last 10,000,000: 15s. Last read position: chr16:30,227,014
INFO 2026-06-08 08:57:08 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:12s. Time for last 10,000,000: 16s. Last read position: chr16:71,922,668
INFO 2026-06-08 08:57:24 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:28s. Time for last 10,000,000: 16s. Last read position: chr17:5,381,394
INFO 2026-06-08 08:57:40 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:44s. Time for last 10,000,000: 16s. Last read position: chr17:31,993,991
INFO 2026-06-08 08:57:56 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:01s. Time for last 10,000,000: 16s. Last read position: chr17:46,649,899
INFO 2026-06-08 08:58:12 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:17s. Time for last 10,000,000: 16s. Last read position: chr17:77,154,939
INFO 2026-06-08 08:58:29 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:33s. Time for last 10,000,000: 16s. Last read position: chr18:48,690,459
INFO 2026-06-08 08:58:45 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:49s. Time for last 10,000,000: 15s. Last read position: chr19:3,543,849
INFO 2026-06-08 08:59:00 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:05s. Time for last 10,000,000: 15s. Last read position: chr19:13,763,006
INFO 2026-06-08 08:59:16 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:21s. Time for last 10,000,000: 15s. Last read position: chr19:35,727,485
INFO 2026-06-08 08:59:32 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:37s. Time for last 10,000,000: 15s. Last read position: chr19:45,785,803
INFO 2026-06-08 08:59:48 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:52s. Time for last 10,000,000: 15s. Last read position: chr19:57,421,397
INFO 2026-06-08 09:00:04 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:09s. Time for last 10,000,000: 16s. Last read position: chr20:48,649,451
INFO 2026-06-08 09:00:19 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:24s. Time for last 10,000,000: 15s. Last read position: chr21:8,216,856
INFO 2026-06-08 09:00:33 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:38s. Time for last 10,000,000: 14s. Last read position: chr21:8,435,327
INFO 2026-06-08 09:00:49 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:53s. Time for last 10,000,000: 15s. Last read position: chr21:44,082,838
INFO 2026-06-08 09:01:05 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:09s. Time for last 10,000,000: 16s. Last read position: chr22:37,142,438
INFO 2026-06-08 09:01:21 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:26s. Time for last 10,000,000: 16s. Last read position: chrX:11,142,234
INFO 2026-06-08 09:01:37 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:16:42s. Time for last 10,000,000: 16s. Last read position: chrX:101,354,545
INFO 2026-06-08 09:01:53 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:16:57s. Time for last 10,000,000: 15s. Last read position: GL000220.1:115,455
INFO 2026-06-08 09:02:07 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:17:11s. Time for last 10,000,000: 14s. Last read position: KI270733.1:129,605
INFO 2026-06-08 09:02:22 MarkDuplicates Written 650,000,000 records. Elapsed time: 00:17:26s. Time for last 10,000,000: 14s. Last read position: KI270733.1:178,252
INFO 2026-06-08 09:02:37 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:02:37 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:02:37 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:02:37 MarkDuplicates Before output close freeMemory: 203850680; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:02:37 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:02:37 MarkDuplicates After output close freeMemory: 104097440; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:02:37 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 41.94 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory