.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (tih_rna_sample_00272_23H5VFLT4_s09)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/c65512efce9a6d2dce7a41a76a54cd/.command.log
Size: 829 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (tih_rna_sample_00272_23H5VFLT4_s09)
Attempt

Content

  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/f4cb9934a3a084f9c3e855090f7e23/tih_rna_sample_00272_23H5VFLT4_s09.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/c65512efce9a6d2dce7a41a76a54cd/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/c65512efce9a6d2dce7a41a76a54cd/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/fd20f1a837ec60b8c9e6662f264a3a/tih_rna_sample_00272_23H5VFLT4_s09.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory