File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/cc400fb3846cc766892525aa9b2d05/.command.out
Size
1.8 KB
Attempt
  AIH curated blacklist: matched 7 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 165
  Pass (FILTER=PASS): 10 (6.1%)
  Fail (FILTER=FAIL): 155 (93.9%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 7
  All 7 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high): 36
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 24
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 20
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 13
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 10
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 10
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 10
  confidence_below_min(low<high): 5
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 5
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 4
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 4
  confidence_below_min(medium<high);aih_curated_blacklist: 3
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0);aih_curated_blacklist: 2
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 2
  total_reads_below_min(7.0<8.0): 1

Breakdown by confidence:
  high: 10 pass, 3 fail (total: 13)
  low: 0 pass, 67 fail (total: 67)
  medium: 0 pass, 85 fail (total: 85)
Arriba filter: 165 rows -> 10 PASS; wrote tih_rna_sample_00407_23H5VFLT4_s33.arriba.fusions.filtered.tsv and tih_rna_sample_00407_23H5VFLT4_s33.arriba.fusions.filtered_pass_only.tsv
Summary written to: tih_rna_sample_00407_23H5VFLT4_s33.arriba.fusions.filter_summary.txt