Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/9055d4b0da3d2fb2a1c6cf662c7616/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/db9b04ff661e457de2bb0aa3fdbac8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/db9b04ff661e457de2bb0aa3fdbac8/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/632bffbeed98a690b177578041a4ec/tih_rna_sample_00116_23H5VFLT4_s36.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/61abda3a3769f07c19974a889853e1/tih_rna_sample_00116_23H5VFLT4_s36.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 282988164
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00116_23H5VFLT4_s36.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	282988164
Known Splicing Events:	278893333
Partial Novel Splicing Events:	1417387
Novel Splicing Events:	2528481
Filtered Splicing Events:	148963

Total splicing  Junctions:	589887
Known Splicing Junctions:	272141
Partial Novel Splicing Junctions:	144280
Novel Splicing Junctions:	173466

===================================================================
Create BED file ...
Create Interact file ...