.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (tih_rna_sample_00400_23H5VFLT4_s27)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/a1619b01db2b6a03bf646a16a45ae0/.command.log
Size: 829 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (tih_rna_sample_00400_23H5VFLT4_s27)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/a0019b75eae7f14e941f7d9c76eabc/tih_rna_sample_00400_23H5VFLT4_s27.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/a1619b01db2b6a03bf646a16a45ae0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/a1619b01db2b6a03bf646a16a45ae0/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/482ec43b890a34f5b7854a197ad763/tih_rna_sample_00400_23H5VFLT4_s27.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory