.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (tih_rna_sample_00111_23H5VFLT4_s30)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/1202f898544a151af84f85ca475aaf/.command.log
Size: 1.6 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (tih_rna_sample_00111_23H5VFLT4_s30)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5b456d70-fab3-4fcc-916c-bc437f411fba/5f/4d32fc1f4ec7fe5ef236279e51ead4/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/1202f898544a151af84f85ca475aaf/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/9276f2f5b5670de43f6fa38d187333/tih_rna_sample_00111_23H5VFLT4_s30.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/1202f898544a151af84f85ca475aaf/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/3171500a50c9bd5080263632153746/tih_rna_sample_00111_23H5VFLT4_s30.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

[32mRunning application...[0m
KCNK12--IGH@-ext
starfusion
STX16--NPEPL1
arriba
TVP23C--CDRT4
arriba

  0%|          | 0/3 [00:00<?, ?it/s]
Processing KCNK12--IGH@-ext:   0%|          | 0/3 [00:00<?, ?it/s]
Processing KCNK12--IGH@-ext:  33%|███▎      | 1/3 [00:00<00:00,  8.48it/s]
Processing STX16--NPEPL1:  33%|███▎      | 1/3 [00:00<00:00,  8.48it/s]   
Processing STX16--NPEPL1:  67%|██████▋   | 2/3 [00:00<00:00,  8.95it/s]
Processing TVP23C--CDRT4:  67%|██████▋   | 2/3 [00:00<00:00,  8.95it/s]
Processing TVP23C--CDRT4: 100%|██████████| 3/3 [00:00<00:00,  9.08it/s]
Processing TVP23C--CDRT4: 100%|██████████| 3/3 [00:00<00:00,  8.99it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory