Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/2397b408a8213734a173d8a752ccf8/tih_rna_sample_00097_23H5VFLT4_s12.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/9055d4b0da3d2fb2a1c6cf662c7616/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/dbe9c66d4c30f70bd763e200515f9b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/dbe9c66d4c30f70bd763e200515f9b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/d08e67d90729dde14e85deda2ab47c/tih_rna_sample_00097_23H5VFLT4_s12.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

processing ref_annot.bed ... Done
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00097_23H5VFLT4_s12.Aligned.sortedByCoord.out.bam.bai
processing tih_rna_sample_00097_23H5VFLT4_s12.Aligned.sortedByCoord.out.bam ... Finished