Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/40a5f4fb9fdc1462b1f9669f5685ad/tih_rna_sample_00407_23H5VFLT4_s33.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/a86209e6f10487a3ed543e3b3a73fb/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/a86209e6f10487a3ed543e3b3a73fb/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory