.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (V4_0001_RNA_0005_23H5VFLT4_s04)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/0948e78a4e4bc27c28a4482362e248/.command.log
Size: 717 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (V4_0001_RNA_0005_23H5VFLT4_s04)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/0948e78a4e4bc27c28a4482362e248/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/1f44b5055e55fc717619aae894bdd4/V4_0001_RNA_0005_23H5VFLT4_s04.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/0948e78a4e4bc27c28a4482362e248/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  V4_0001_RNA_0005_23H5VFLT4_s04: vaf_p90=1.000000 -> CLEAN

Output saved to: V4_0001_RNA_0005_23H5VFLT4_s04.predictions.csv
Summary: 0/1 samples flagged as contaminated