Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/6ff4092dd52ec3d8c9234b96f1d6b6/tih_rna_sample_00117_23H5VFLT4_s37.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/35d8aa612f3cd735eb29058c01cd80/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/35d8aa612f3cd735eb29058c01cd80/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
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Processed 310000000 records
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paired = 205436832
unpaired = 2581600
MERGED PAIRED END READS = 205436832
MATES PROCESSED = 413455264
TOTAL READS = 208018432
DISTINCT READS = 4.38859e+07
DISTINCT COUNTS = 1039
MAX COUNT = 330962
COUNTS OF 1 = 1.63729e+07
MAX TERMS = 100
OBSERVED COUNTS (330963)
1 16372915
2 6082771
3 3677477
4 2894346
5 2454190
6 2095688
7 1769941
8 1478404
9 1225182
10 1007271
11 823787
12 669722
13 544716
14 443430
15 361668
16 294437
17 242063
18 198551
19 164279
20 138049
21 114874
22 96689
23 82511
24 70150
25 60049
26 52366
27 44998
28 39611
29 34713
30 30494
31 27322
32 24257
33 21646
34 19285
35 17521
36 15680
37 14211
38 12886
39 11473
40 10326
41 9514
42 8654
43 7998
44 7062
45 6630
46 5836
47 5486
48 5062
49 4611
50 4279
51 3933
52 3599
53 3355
54 3059
55 2832
56 2693
57 2460
58 2285
59 2148
60 1972
61 1904
62 1811
63 1684
64 1546
65 1497
66 1354
67 1342
68 1249
69 1163
70 1142
71 1027
72 1041
73 957
74 891
75 926
76 916
77 798
78 795
79 781
80 731
81 685
82 651
83 638
84 632
85 547
86 516
87 516
88 515
89 494
90 517
91 501
92 455
93 437
94 389
95 411
96 388
97 412
98 387
99 371
100 358
101 311
102 333
103 345
104 319
105 321
106 286
107 268
108 284
109 301
110 251
111 288
112 233
113 254
114 249
115 226
116 235
117 238
118 218
119 225
120 203
121 194
122 179
123 201
124 169
125 175
126 195
127 166
128 160
129 182
130 161
131 130
132 167
133 138
134 163
135 158
136 142
137 149
138 145
139 143
140 121
141 122
142 141
143 137
144 138
145 115
146 131
147 109
148 120
149 122
150 118
151 105
152 99
153 122
154 104
155 90
156 90
157 95
158 96
159 86
160 86
161 75
162 101
163 102
164 71
165 83
166 83
167 89
168 93
169 95
170 89
171 70
172 70
173 66
174 76
175 60
176 64
177 69
178 68
179 74
180 67
181 62
182 72
183 50
184 45
185 65
186 56
187 60
188 53
189 58
190 63
191 63
192 51
193 61
194 47
195 66
196 52
197 44
198 61
199 52
200 59
201 50
202 54
203 52
204 40
205 42
206 46
207 36
208 40
209 43
210 43
211 43
212 47
213 44
214 34
215 43
216 52
217 36
218 54
219 27
220 38
221 38
222 49
223 33
224 37
225 33
226 36
227 38
228 42
229 46
230 26
231 26
232 31
233 30
234 37
235 29
236 30
237 28
238 31
239 42
240 26
241 46
242 45
243 29
244 31
245 27
246 24
247 24
248 28
249 27
250 29
251 31
252 26
253 27
254 30
255 26
256 19
257 23
258 36
259 29
260 23
261 25
262 24
263 16
264 17
265 23
266 21
267 22
268 17
269 26
270 27
271 21
272 12
273 19
274 23
275 18
276 21
277 17
278 11
279 14
280 17
281 16
282 18
283 14
284 20
285 21
286 21
287 15
288 20
289 8
290 24
291 20
292 13
293 18
294 13
295 25
296 15
297 17
298 14
299 11
300 18
301 14
302 19
303 20
304 9
305 17
306 18
307 13
308 17
309 19
310 15
311 15
312 10
313 10
314 3
315 18
316 13
317 16
318 16
319 10
320 11
321 11
322 19
323 16
324 19
325 17
326 14
327 17
328 16
329 13
330 17
331 14
332 11
333 13
334 9
335 6
336 10
337 13
338 11
339 11
340 10
341 13
342 10
343 12
344 6
345 8
346 18
347 16
348 14
349 14
350 14
351 11
352 13
353 13
354 8
355 14
356 11
357 20
358 15
359 9
360 7
361 6
362 7
363 12
364 7
365 11
366 10
367 9
368 9
369 12
370 12
371 8
372 9
373 8
374 7
375 12
376 8
377 7
378 13
379 14
380 9
381 12
382 9
383 6
384 12
385 7
386 9
387 18
388 11
389 10
390 11
391 7
392 12
393 9
394 4
395 5
396 9
397 6
398 9
399 6
400 7
401 8
402 2
403 5
404 5
405 7
406 7
407 11
408 14
409 4
410 5
411 6
412 6
413 11
414 5
415 8
416 10
417 6
418 5
419 8
420 7
421 5
422 4
423 8
424 4
425 7
426 5
427 7
428 2
429 13
430 6
431 6
432 6
433 5
434 7
435 7
436 4
437 10
438 7
439 5
440 7
441 3
442 3
443 7
444 3
445 1
446 2
447 5
448 9
449 7
450 1
451 5
452 2
453 5
454 8
455 4
456 8
457 2
458 8
459 3
460 3
461 10
462 7
463 6
464 3
465 4
466 5
467 5
468 5
469 4
470 7
471 3
472 5
473 4
474 2
475 5
476 3
477 5
478 5
479 5
480 5
481 3
482 8
483 2
484 4
485 6
486 5
487 4
488 5
489 8
490 2
491 6
492 7
493 6
494 3
495 3
496 4
497 6
498 4
499 4
500 4
501 2
502 7
503 3
504 3
505 3
506 2
507 8
508 5
509 5
510 3
511 4
512 3
513 4
514 2
515 4
516 5
517 4
518 3
519 3
520 3
521 4
522 4
523 2
524 2
525 4
526 2
527 4
528 3
529 4
530 3
531 4
532 3
534 4
535 1
536 4
537 1
538 1
539 3
540 5
541 2
542 5
543 3
544 2
545 3
546 6
547 6
548 3
549 2
551 2
552 2
553 3
554 4
555 3
556 1
558 1
559 2
560 4
562 2
563 3
564 6
565 3
566 4
567 3
568 5
569 1
570 5
571 4
572 5
573 4
574 1
575 1
576 4
577 2
578 3
579 1
580 3
581 1
583 4
584 2
585 1
586 2
589 1
590 2
591 5
592 6
593 2
594 6
595 1
596 2
597 3
598 1
599 1
600 2
601 2
602 3
603 1
604 1
605 4
606 3
607 1
608 3
609 3
610 5
611 1
612 3
613 3
614 4
615 2
616 6
618 3
620 2
621 4
622 2
623 2
624 2
625 3
626 4
627 1
628 3
629 1
631 5
632 4
634 5
635 1
636 1
637 1
638 3
639 4
640 1
641 3
642 1
643 1
644 2
645 4
646 1
648 1
649 4
650 1
651 4
652 1
653 1
654 2
656 4
657 2
658 1
659 5
660 4
661 1
662 1
663 7
665 2
667 1
669 2
671 1
672 1
673 1
674 1
675 2
677 3
679 2
680 3
681 1
682 4
684 1
685 5
686 2
687 3
688 4
689 1
690 3
691 1
693 1
694 3
695 3
696 1
698 1
700 1
701 2
702 2
703 2
704 1
707 3
708 1
709 3
710 1
711 1
712 1
714 1
715 3
716 2
717 1
718 1
721 3
722 2
723 1
724 1
725 1
727 3
729 2
730 5
732 3
733 2
736 2
737 2
738 2
739 2
740 4
741 1
743 1
744 1
745 2
747 2
749 1
750 1
751 2
752 1
754 1
755 2
756 2
757 3
758 3
761 1
762 2
766 2
767 1
768 2
769 2
770 1
772 2
773 1
776 2
777 1
778 2
781 1
782 1
783 1
784 2
786 1
787 2
788 1
789 1
791 3
792 2
793 1
794 2
795 3
796 4
797 1
798 1
801 1
802 4
803 1
804 2
806 1
809 2
813 1
814 1
817 1
818 2
819 3
820 1
821 1
822 2
823 4
824 1
826 1
827 1
829 1
830 1
831 2
832 3
833 1
834 1
836 1
837 1
838 2
839 2
840 1
841 1
846 3
848 1
849 1
851 1
852 2
856 1
857 2
860 3
862 1
864 1
865 3
869 1
870 1
872 1
875 1
876 1
880 1
882 1
884 1
885 1
886 2
890 1
893 1
897 1
898 2
901 1
902 1
903 1
905 1
906 2
908 1
909 2
917 1
918 1
919 1
920 2
925 3
926 3
927 2
929 1
931 3
932 1
933 2
939 1
945 1
947 2
950 1
951 1
952 1
960 1
962 1
963 1
964 1
965 1
967 1
968 1
969 1
976 1
977 2
978 1
979 1
980 1
981 1
982 1
984 1
986 1
990 2
992 1
993 1
994 2
1002 1
1008 1
1010 2
1016 1
1018 1
1019 1
1026 1
1031 1
1036 1
1038 1
1039 1
1040 1
1041 1
1044 1
1046 1
1047 1
1051 1
1052 1
1054 1
1055 1
1056 1
1061 1
1069 1
1073 1
1076 2
1077 1
1078 1
1079 1
1082 1
1086 2
1087 1
1088 1
1090 1
1101 2
1105 1
1113 2
1115 1
1117 1
1118 1
1123 1
1128 2
1138 1
1140 1
1143 1
1157 1
1164 1
1168 1
1177 1
1181 1
1183 2
1188 1
1190 1
1191 1
1196 1
1199 1
1207 1
1209 1
1211 1
1213 1
1216 1
1220 1
1234 1
1235 1
1237 2
1242 1
1244 1
1247 1
1249 1
1258 1
1267 1
1268 1
1275 1
1277 1
1283 1
1294 1
1298 1
1300 1
1301 1
1303 1
1310 1
1311 1
1316 1
1325 1
1335 1
1340 1
1343 1
1349 2
1352 1
1355 1
1360 1
1365 1
1372 1
1373 1
1377 1
1385 1
1387 1
1394 1
1424 2
1432 1
1444 1
1454 1
1462 1
1464 2
1466 1
1472 1
1473 1
1506 1
1507 1
1514 1
1523 1
1525 1
1535 1
1551 1
1565 2
1585 2
1591 1
1595 1
1608 1
1610 1
1621 1
1645 1
1649 2
1651 1
1652 1
1654 1
1656 1
1678 1
1699 1
1703 1
1731 1
1735 1
1744 1
1752 1
1765 1
1766 1
1773 1
1775 1
1787 1
1823 1
1826 1
1833 1
1847 1
1857 1
1881 1
1909 1
1950 1
1958 1
1996 1
2001 1
2050 1
2057 1
2066 1
2076 1
2077 1
2100 1
2134 1
2164 1
2183 1
2199 1
2282 1
2292 1
2294 1
2356 1
2429 1
2549 1
2678 1
2700 1
2813 1
2814 1
2882 1
2898 1
2969 1
2998 1
3062 1
3292 1
3293 1
3385 1
3534 1
3686 1
3769 1
3789 1
4468 1
4510 1
4599 1
6443 1
7373 1
7404 1
7784 1
15662 1
330962 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.._.._..__......._..._......._....._._..._.._.......__._..._......__.__.
_..._...._._.__..._..._........_._..__._..__..__._._.._..._........_.
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]