Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/7e40f56165a19134e1aba9b60dab0b/GM24385_0001_RNA_0001_23H5VFLT4_s48.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/9055d4b0da3d2fb2a1c6cf662c7616/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/00592105b495e42f87f7a339b540c8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/00592105b495e42f87f7a339b540c8/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/9d83ec513ae19da8f8dfe36ba5274b/GM24385_0001_RNA_0001_23H5VFLT4_s48.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 183989693
[W::hts_idx_load3] The index file is older than the data file: GM24385_0001_RNA_0001_23H5VFLT4_s48.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	183989693
Known Splicing Events:	181808573
Partial Novel Splicing Events:	1310981
Novel Splicing Events:	803911
Filtered Splicing Events:	66228

Total splicing  Junctions:	315707
Known Splicing Junctions:	197717
Partial Novel Splicing Junctions:	70432
Novel Splicing Junctions:	47558

===================================================================
Create BED file ...
Create Interact file ...