Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/9055d4b0da3d2fb2a1c6cf662c7616/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/ef18a699e6261aca795f764e9a4859/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/ef18a699e6261aca795f764e9a4859/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/6ff4092dd52ec3d8c9234b96f1d6b6/tih_rna_sample_00117_23H5VFLT4_s37.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/a55977f5eeb50e489ed7349394b583/tih_rna_sample_00117_23H5VFLT4_s37.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 194655689
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00117_23H5VFLT4_s37.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	194655689
Known Splicing Events:	192901384
Partial Novel Splicing Events:	1074751
Novel Splicing Events:	609505
Filtered Splicing Events:	70049

Total splicing  Junctions:	311291
Known Splicing Junctions:	215698
Partial Novel Splicing Junctions:	52195
Novel Splicing Junctions:	43398

===================================================================
Create BED file ...
Create Interact file ...