Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/3cb4f22162cfdd0018680c5b92b124/tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/915b3dcaa925ac01dc39b26aaa4270/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/915b3dcaa925ac01dc39b26aaa4270/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
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paired = 166279970
unpaired = 2542005
MERGED PAIRED END READS = 166279970
MATES PROCESSED = 335101945
TOTAL READS = 168821975
DISTINCT READS = 4.38958e+07
DISTINCT COUNTS = 568
MAX COUNT = 221179
COUNTS OF 1 = 1.90836e+07
MAX TERMS = 100
OBSERVED COUNTS (221180)
1 19083606
2 6782146
3 3726219
4 2703483
5 2158893
6 1759295
7 1435453
8 1164942
9 940272
10 756786
11 607692
12 488239
13 392097
14 315351
15 255658
16 206895
17 168297
18 138400
19 114081
20 94583
21 78745
22 66246
23 55739
24 47468
25 40390
26 34915
27 29865
28 26178
29 23062
30 19926
31 17660
32 15270
33 13586
34 12224
35 10786
36 9490
37 8477
38 7621
39 6971
40 6357
41 5494
42 4994
43 4402
44 4146
45 3635
46 3456
47 3038
48 2858
49 2500
50 2289
51 2071
52 1916
53 1767
54 1639
55 1500
56 1400
57 1243
58 1114
59 1092
60 1051
61 919
62 886
63 784
64 750
65 678
66 702
67 619
68 605
69 547
70 532
71 519
72 506
73 433
74 401
75 389
76 341
77 376
78 342
79 372
80 300
81 305
82 279
83 267
84 273
85 235
86 220
87 222
88 212
89 236
90 191
91 177
92 184
93 177
94 152
95 191
96 164
97 151
98 149
99 153
100 137
101 135
102 132
103 121
104 108
105 110
106 99
107 105
108 102
109 85
110 112
111 104
112 97
113 98
114 79
115 95
116 89
117 86
118 68
119 75
120 58
121 68
122 73
123 52
124 64
125 59
126 51
127 55
128 58
129 63
130 47
131 61
132 49
133 62
134 53
135 40
136 44
137 53
138 44
139 48
140 36
141 40
142 46
143 34
144 35
145 47
146 47
147 35
148 37
149 39
150 27
151 35
152 35
153 33
154 36
155 28
156 34
157 30
158 27
159 31
160 26
161 35
162 27
163 32
164 20
165 24
166 29
167 22
168 33
169 27
170 22
171 27
172 23
173 19
174 25
175 26
176 25
177 19
178 29
179 20
180 10
181 15
182 13
183 22
184 13
185 19
186 19
187 12
188 13
189 16
190 15
191 18
192 14
193 15
194 22
195 13
196 13
197 12
198 14
199 14
200 15
201 17
202 19
203 12
204 13
205 15
206 15
207 5
208 11
209 10
210 15
211 10
212 7
213 10
214 6
215 12
216 8
217 9
218 11
219 12
220 14
221 9
222 7
223 10
224 10
225 8
226 13
227 12
228 8
229 10
230 6
231 8
232 5
233 12
234 8
235 9
236 11
237 14
238 7
239 6
240 4
241 9
242 6
243 10
244 6
245 9
246 5
247 5
248 10
249 7
250 6
251 8
252 5
253 10
254 6
255 6
256 12
257 11
258 4
259 7
260 6
261 5
262 6
263 5
264 8
265 3
266 7
267 5
268 4
269 2
270 6
271 5
272 7
273 7
274 5
275 9
276 7
277 1
278 1
279 6
280 7
281 3
282 3
283 4
284 3
285 6
286 4
287 6
288 3
290 6
291 7
292 3
293 4
294 1
295 5
296 6
297 7
298 7
299 4
300 2
301 5
302 5
303 4
304 5
305 2
307 4
308 5
309 5
310 3
311 5
312 4
313 4
314 2
315 3
316 2
317 4
318 1
319 3
320 3
321 6
322 3
323 5
324 1
325 2
326 3
327 3
328 9
329 3
330 3
331 6
332 8
333 2
334 2
335 1
336 2
339 2
340 2
341 4
342 2
343 3
344 2
346 1
347 2
348 1
349 2
350 2
351 3
352 2
353 3
354 2
355 1
357 1
358 3
360 3
361 2
362 3
364 3
366 4
367 1
368 1
369 2
370 1
371 2
373 3
375 4
377 4
378 1
379 2
380 1
381 2
385 2
386 2
388 2
389 3
390 3
391 2
392 2
393 2
394 1
395 3
396 2
397 4
398 3
399 2
401 2
403 2
404 2
407 2
409 1
411 1
412 1
415 2
417 1
419 2
421 1
422 1
423 1
424 1
425 1
427 1
428 2
429 1
430 1
431 1
432 1
434 1
436 1
437 1
439 2
440 2
442 1
443 1
445 1
446 1
447 1
449 2
450 1
454 1
455 1
456 2
462 1
465 1
466 1
467 1
468 1
469 2
470 1
471 1
472 1
473 2
474 1
475 1
476 1
477 1
479 1
482 2
484 1
485 2
486 1
488 1
489 1
491 1
495 1
498 1
499 1
501 2
504 1
506 1
507 1
508 1
509 2
512 1
516 1
517 1
519 1
522 1
525 1
526 2
527 2
528 1
529 1
531 1
537 2
538 1
539 2
540 1
543 1
562 1
564 1
566 1
567 1
568 2
569 1
570 1
573 2
576 1
577 1
586 1
587 1
595 3
596 1
597 1
598 1
604 2
606 1
608 1
609 1
610 1
613 1
615 2
617 2
622 1
623 1
625 1
636 1
637 1
639 1
640 1
641 1
651 1
653 1
655 2
661 2
662 1
679 2
682 1
685 1
691 1
695 1
701 2
704 1
705 1
706 1
712 1
719 1
745 1
746 1
747 1
755 1
761 1
762 1
772 1
777 1
792 1
793 1
804 1
805 1
807 1
818 1
820 1
836 1
839 1
845 2
867 1
872 1
888 1
913 1
920 1
927 1
928 1
962 1
973 1
1034 1
1050 1
1073 1
1131 1
1132 1
1137 1
1196 1
1197 1
1251 1
1258 1
1270 1
1303 1
1337 1
1370 1
1377 1
1613 1
1717 1
1763 1
1851 1
1956 1
2002 1
2082 1
2567 1
3213 1
3920 1
7051 1
221179 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
_...___._.._.........._.._......__._...._._._..._....._..............._.
__..........._..............._.__..._._.__.__._...........
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]