File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/44cfb09d6411ed48351ae95779688a/.command.log
Size
3.2 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (tih_rna_sample_00090_23H5VFLT4_s32)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/1ec2ee5aefa5681d6be712733c08c1/tih_rna_sample_00090_23H5VFLT4_s32.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/0e3fc47290224a4583a9dea9fa4a9d/tih_rna_sample_00090_23H5VFLT4_s32.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5b456d70-fab3-4fcc-916c-bc437f411fba/5f/4d32fc1f4ec7fe5ef236279e51ead4/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/44cfb09d6411ed48351ae95779688a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/44cfb09d6411ed48351ae95779688a/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
CDH1--TANGO6
starfusion
arriba
ABHD12--NINL
starfusion
arriba
ALDH16A1--ALDH16A1
arriba
SH3YL1--FAM110C
arriba
SH3YL1--AC079779.1
arriba
TVP23C--CDRT4
arriba
STX16--NPEPL1
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHA13
arriba
SUMF1--AC087857.1
arriba

  0%|          | 0/11 [00:00<?, ?it/s]
Processing CDH1--TANGO6:   0%|          | 0/11 [00:00<?, ?it/s]
Processing CDH1--TANGO6:   9%|▉         | 1/11 [00:00<00:01,  9.23it/s]
Processing ABHD12--NINL:   9%|▉         | 1/11 [00:00<00:01,  9.23it/s]
Processing ABHD12--NINL:  18%|█▊        | 2/11 [00:00<00:00,  9.47it/s]
Processing ALDH16A1--ALDH16A1:  18%|█▊        | 2/11 [00:00<00:00,  9.47it/s]
Processing ALDH16A1--ALDH16A1:  27%|██▋       | 3/11 [00:00<00:00,  9.55it/s]
Processing SH3YL1--FAM110C:  27%|██▋       | 3/11 [00:00<00:00,  9.55it/s]   
Processing SH3YL1--FAM110C:  36%|███▋      | 4/11 [00:00<00:00,  9.59it/s]
Processing SH3YL1--AC079779.1:  36%|███▋      | 4/11 [00:00<00:00,  9.59it/s]
Processing SH3YL1--AC079779.1:  45%|████▌     | 5/11 [00:00<00:00,  9.61it/s]
Processing TVP23C--CDRT4:  45%|████▌     | 5/11 [00:00<00:00,  9.61it/s]     
Processing TVP23C--CDRT4:  55%|█████▍    | 6/11 [00:00<00:00,  9.62it/s]
Processing STX16--NPEPL1:  55%|█████▍    | 6/11 [00:00<00:00,  9.62it/s]
Processing STX16--NPEPL1:  64%|██████▎   | 7/11 [00:00<00:00,  9.63it/s]
Processing PCDHA11--PCDHAC2:  64%|██████▎   | 7/11 [00:00<00:00,  9.63it/s]
Processing PCDHA11--PCDHAC2:  73%|███████▎  | 8/11 [00:00<00:00,  9.64it/s]
Processing PCDHA11--PCDHAC1:  73%|███████▎  | 8/11 [00:00<00:00,  9.64it/s]
Processing PCDHA11--PCDHAC1:  82%|████████▏ | 9/11 [00:00<00:00,  9.64it/s]
Processing PCDHA11--PCDHA13:  82%|████████▏ | 9/11 [00:00<00:00,  9.64it/s]
Processing PCDHA11--PCDHA13:  91%|█████████ | 10/11 [00:01<00:00,  9.64it/s]
Processing SUMF1--AC087857.1:  91%|█████████ | 10/11 [00:01<00:00,  9.64it/s]
Processing SUMF1--AC087857.1: 100%|██████████| 11/11 [00:01<00:00,  9.65it/s]
Processing SUMF1--AC087857.1: 100%|██████████| 11/11 [00:01<00:00,  9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory