Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/29904977f0c6c0db2c8f2652f797e7/HD789_0002_RNA_0008_23H5VFLT4_s19.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/9fffcf628c21a98dfc4716b513b1ee/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/9fffcf628c21a98dfc4716b513b1ee/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory