Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/038f07b772c0eb1b53f89edbec8dfd/tih_rna_sample_00090_23H5VFLT4_s32.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/9055d4b0da3d2fb2a1c6cf662c7616/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/eb3a99c720be76c5ec08b23060853d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/eb3a99c720be76c5ec08b23060853d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/77bc9fbe086b5f96aead23d671d97b/tih_rna_sample_00090_23H5VFLT4_s32.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 268698271
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00090_23H5VFLT4_s32.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	268698271
Known Splicing Events:	265702607
Partial Novel Splicing Events:	1474806
Novel Splicing Events:	1362813
Filtered Splicing Events:	158045

Total splicing  Junctions:	556568
Known Splicing Junctions:	261857
Partial Novel Splicing Junctions:	134262
Novel Splicing Junctions:	160449

===================================================================
Create BED file ...
Create Interact file ...