Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/3cb4f22162cfdd0018680c5b92b124/tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/9055d4b0da3d2fb2a1c6cf662c7616/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/7a6f169788ce077e93fdb4a7445462/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/7a6f169788ce077e93fdb4a7445462/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/7d5554434fdfcaf847f88afb1e6254/tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (6112882) splicing reads. 210646 splicing junctions. 169631 known splicing junctions. 41015 novel splicing junctions.
sampling 10% (12225765) splicing reads. 239274 splicing junctions. 179474 known splicing junctions. 59800 novel splicing junctions.
sampling 15% (18338648) splicing reads. 255556 splicing junctions. 184034 known splicing junctions. 71522 novel splicing junctions.
sampling 20% (24451531) splicing reads. 266737 splicing junctions. 186666 known splicing junctions. 80071 novel splicing junctions.
sampling 25% (30564414) splicing reads. 275001 splicing junctions. 188452 known splicing junctions. 86549 novel splicing junctions.
sampling 30% (36677297) splicing reads. 281281 splicing junctions. 189719 known splicing junctions. 91562 novel splicing junctions.
sampling 35% (42790179) splicing reads. 286313 splicing junctions. 190659 known splicing junctions. 95654 novel splicing junctions.
sampling 40% (48903062) splicing reads. 290502 splicing junctions. 191434 known splicing junctions. 99068 novel splicing junctions.
sampling 45% (55015945) splicing reads. 293955 splicing junctions. 192050 known splicing junctions. 101905 novel splicing junctions.
sampling 50% (61128828) splicing reads. 296891 splicing junctions. 192573 known splicing junctions. 104318 novel splicing junctions.
sampling 55% (67241711) splicing reads. 299371 splicing junctions. 192966 known splicing junctions. 106405 novel splicing junctions.
sampling 60% (73354594) splicing reads. 301393 splicing junctions. 193290 known splicing junctions. 108103 novel splicing junctions.
sampling 65% (79467477) splicing reads. 303235 splicing junctions. 193587 known splicing junctions. 109648 novel splicing junctions.
sampling 70% (85580359) splicing reads. 304786 splicing junctions. 193813 known splicing junctions. 110973 novel splicing junctions.
sampling 75% (91693242) splicing reads. 306054 splicing junctions. 193989 known splicing junctions. 112065 novel splicing junctions.
sampling 80% (97806125) splicing reads. 307143 splicing junctions. 194163 known splicing junctions. 112980 novel splicing junctions.
sampling 85% (103919008) splicing reads. 307939 splicing junctions. 194267 known splicing junctions. 113672 novel splicing junctions.
sampling 90% (110031891) splicing reads. 308572 splicing junctions. 194357 known splicing junctions. 114215 novel splicing junctions.
sampling 95% (116144774) splicing reads. 309010 splicing junctions. 194408 known splicing junctions. 114602 novel splicing junctions.
sampling 100% (122257657) splicing reads. 309252 splicing junctions. 194446 known splicing junctions. 114806 novel splicing junctions.
null device 
          1