Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/42714a2da9de9f68f196a07b83a733/tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/b4fd56b6905690bc8ad5f2fdcdf036/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/b4fd56b6905690bc8ad5f2fdcdf036/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/470633ec6875aa44e851b44cd7b6c7/tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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