Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT GM24385_0001_RNA_0001_23H5VFLT4_s08.Aligned.sortedByCoord.out.bam --OUTPUT GM24385_0001_RNA_0001_23H5VFLT4_s08.md.bam --METRICS_FILE GM24385_0001_RNA_0001_23H5VFLT4_s08.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:22:41.176 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:22:41 GMT 2026] MarkDuplicates --INPUT GM24385_0001_RNA_0001_23H5VFLT4_s08.Aligned.sortedByCoord.out.bam --OUTPUT GM24385_0001_RNA_0001_23H5VFLT4_s08.md.bam --METRICS_FILE GM24385_0001_RNA_0001_23H5VFLT4_s08.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:22:41 GMT 2026] Executing as ?@nf-62f419cc14b8b5af7cc42d7b4a43a530-0744e-sdnv4 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:22:41 MarkDuplicates Start of doWork freeMemory: 105828928; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:22:41 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:22:41 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:22:44 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,211,706
INFO 2026-06-08 08:22:44 MarkDuplicates Tracking 1697 as yet unmatched pairs. 381 records in RAM.
INFO 2026-06-08 08:22:46 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:1,703,181
INFO 2026-06-08 08:22:46 MarkDuplicates Tracking 3245 as yet unmatched pairs. 326 records in RAM.
INFO 2026-06-08 08:22:48 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:6,096,675
INFO 2026-06-08 08:22:48 MarkDuplicates Tracking 5346 as yet unmatched pairs. 1081 records in RAM.
INFO 2026-06-08 08:22:50 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:8,868,041
INFO 2026-06-08 08:22:50 MarkDuplicates Tracking 6026 as yet unmatched pairs. 542 records in RAM.
INFO 2026-06-08 08:22:52 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:11,247,904
INFO 2026-06-08 08:22:52 MarkDuplicates Tracking 6868 as yet unmatched pairs. 145 records in RAM.
INFO 2026-06-08 08:22:54 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:15,548,309
INFO 2026-06-08 08:22:54 MarkDuplicates Tracking 8210 as yet unmatched pairs. 68 records in RAM.
INFO 2026-06-08 08:22:56 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 2s. Last read position: chr1:16,740,529
INFO 2026-06-08 08:22:56 MarkDuplicates Tracking 9059 as yet unmatched pairs. 6 records in RAM.
INFO 2026-06-08 08:22:58 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:19,339,450
INFO 2026-06-08 08:22:58 MarkDuplicates Tracking 10467 as yet unmatched pairs. 407 records in RAM.
INFO 2026-06-08 08:23:00 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:23,055,944
INFO 2026-06-08 08:23:00 MarkDuplicates Tracking 11278 as yet unmatched pairs. 237 records in RAM.
INFO 2026-06-08 08:23:01 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:25,245,199
INFO 2026-06-08 08:23:01 MarkDuplicates Tracking 12487 as yet unmatched pairs. 385 records in RAM.
INFO 2026-06-08 08:23:03 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:26,848,624
INFO 2026-06-08 08:23:03 MarkDuplicates Tracking 13542 as yet unmatched pairs. 235 records in RAM.
INFO 2026-06-08 08:23:05 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 2s. Last read position: chr1:28,236,260
INFO 2026-06-08 08:23:05 MarkDuplicates Tracking 15281 as yet unmatched pairs. 772 records in RAM.
INFO 2026-06-08 08:23:07 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:31,585,199
INFO 2026-06-08 08:23:07 MarkDuplicates Tracking 15610 as yet unmatched pairs. 46 records in RAM.
INFO 2026-06-08 08:23:09 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:32,797,768
INFO 2026-06-08 08:23:09 MarkDuplicates Tracking 17078 as yet unmatched pairs. 346 records in RAM.
INFO 2026-06-08 08:23:11 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 2s. Last read position: chr1:35,751,382
INFO 2026-06-08 08:23:11 MarkDuplicates Tracking 18166 as yet unmatched pairs. 28 records in RAM.
INFO 2026-06-08 08:23:13 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 2s. Last read position: chr1:39,231,234
INFO 2026-06-08 08:23:13 MarkDuplicates Tracking 19795 as yet unmatched pairs. 462 records in RAM.
INFO 2026-06-08 08:23:16 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:40,303,529
INFO 2026-06-08 08:23:16 MarkDuplicates Tracking 21683 as yet unmatched pairs. 1431 records in RAM.
INFO 2026-06-08 08:23:18 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:43,359,775
INFO 2026-06-08 08:23:18 MarkDuplicates Tracking 21533 as yet unmatched pairs. 147 records in RAM.
INFO 2026-06-08 08:23:20 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:44,978,441
INFO 2026-06-08 08:23:20 MarkDuplicates Tracking 22735 as yet unmatched pairs. 282 records in RAM.
INFO 2026-06-08 08:23:21 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:47,373,556
INFO 2026-06-08 08:23:21 MarkDuplicates Tracking 23709 as yet unmatched pairs. 119 records in RAM.
INFO 2026-06-08 08:23:23 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:53,270,889
INFO 2026-06-08 08:23:23 MarkDuplicates Tracking 24685 as yet unmatched pairs. 86 records in RAM.
INFO 2026-06-08 08:23:25 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 2s. Last read position: chr1:66,959,715
INFO 2026-06-08 08:23:25 MarkDuplicates Tracking 25701 as yet unmatched pairs. 210 records in RAM.
INFO 2026-06-08 08:23:27 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 2s. Last read position: chr1:78,641,429
INFO 2026-06-08 08:23:27 MarkDuplicates Tracking 27754 as yet unmatched pairs. 1485 records in RAM.
INFO 2026-06-08 08:23:30 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 2s. Last read position: chr1:89,843,759
INFO 2026-06-08 08:23:30 MarkDuplicates Tracking 27515 as yet unmatched pairs. 434 records in RAM.
INFO 2026-06-08 08:23:31 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:100,913,713
INFO 2026-06-08 08:23:31 MarkDuplicates Tracking 28290 as yet unmatched pairs. 346 records in RAM.
INFO 2026-06-08 08:23:33 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:110,404,013
INFO 2026-06-08 08:23:33 MarkDuplicates Tracking 29243 as yet unmatched pairs. 248 records in RAM.
INFO 2026-06-08 08:23:35 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:112,703,736
INFO 2026-06-08 08:23:35 MarkDuplicates Tracking 30104 as yet unmatched pairs. 130 records in RAM.
INFO 2026-06-08 08:23:36 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:116,396,649
INFO 2026-06-08 08:23:36 MarkDuplicates Tracking 31577 as yet unmatched pairs. 576 records in RAM.
INFO 2026-06-08 08:23:39 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 2s. Last read position: chr1:121,554,454
INFO 2026-06-08 08:23:39 MarkDuplicates Tracking 31707 as yet unmatched pairs. 15 records in RAM.
INFO 2026-06-08 08:23:41 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:146,984,134
INFO 2026-06-08 08:23:41 MarkDuplicates Tracking 32412 as yet unmatched pairs. 242 records in RAM.
INFO 2026-06-08 08:23:42 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:149,840,792
INFO 2026-06-08 08:23:42 MarkDuplicates Tracking 34133 as yet unmatched pairs. 1410 records in RAM.
INFO 2026-06-08 08:23:44 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:150,436,359
INFO 2026-06-08 08:23:44 MarkDuplicates Tracking 34075 as yet unmatched pairs. 497 records in RAM.
INFO 2026-06-08 08:23:46 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:151,289,453
INFO 2026-06-08 08:23:46 MarkDuplicates Tracking 34943 as yet unmatched pairs. 229 records in RAM.
INFO 2026-06-08 08:23:47 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:153,936,593
INFO 2026-06-08 08:23:47 MarkDuplicates Tracking 36428 as yet unmatched pairs. 588 records in RAM.
INFO 2026-06-08 08:23:49 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:154,207,495
INFO 2026-06-08 08:23:49 MarkDuplicates Tracking 37560 as yet unmatched pairs. 790 records in RAM.
INFO 2026-06-08 08:23:50 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:154,948,291
INFO 2026-06-08 08:23:50 MarkDuplicates Tracking 38076 as yet unmatched pairs. 279 records in RAM.
INFO 2026-06-08 08:23:52 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:155,610,226
INFO 2026-06-08 08:23:52 MarkDuplicates Tracking 38911 as yet unmatched pairs. 27 records in RAM.
INFO 2026-06-08 08:23:55 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 2s. Last read position: chr1:156,156,558
INFO 2026-06-08 08:23:55 MarkDuplicates Tracking 40778 as yet unmatched pairs. 813 records in RAM.
INFO 2026-06-08 08:23:57 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 2s. Last read position: chr1:157,524,402
INFO 2026-06-08 08:23:57 MarkDuplicates Tracking 42803 as yet unmatched pairs. 1742 records in RAM.
INFO 2026-06-08 08:23:59 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 2s. Last read position: chr1:160,619,839
INFO 2026-06-08 08:23:59 MarkDuplicates Tracking 42381 as yet unmatched pairs. 593 records in RAM.
INFO 2026-06-08 08:24:01 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:161,210,378
INFO 2026-06-08 08:24:01 MarkDuplicates Tracking 42933 as yet unmatched pairs. 173 records in RAM.
INFO 2026-06-08 08:24:03 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:168,184,858
INFO 2026-06-08 08:24:03 MarkDuplicates Tracking 43940 as yet unmatched pairs. 165 records in RAM.
INFO 2026-06-08 08:24:05 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:173,757,038
INFO 2026-06-08 08:24:05 MarkDuplicates Tracking 44802 as yet unmatched pairs. 114 records in RAM.
INFO 2026-06-08 08:24:06 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:180,094,463
INFO 2026-06-08 08:24:06 MarkDuplicates Tracking 45635 as yet unmatched pairs. 175 records in RAM.
INFO 2026-06-08 08:24:08 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:184,795,404
INFO 2026-06-08 08:24:08 MarkDuplicates Tracking 46877 as yet unmatched pairs. 85 records in RAM.
INFO 2026-06-08 08:24:09 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:193,238,714
INFO 2026-06-08 08:24:09 MarkDuplicates Tracking 47734 as yet unmatched pairs. 167 records in RAM.
INFO 2026-06-08 08:24:11 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:202,348,854
INFO 2026-06-08 08:24:11 MarkDuplicates Tracking 49048 as yet unmatched pairs. 394 records in RAM.
INFO 2026-06-08 08:24:12 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:205,623,712
INFO 2026-06-08 08:24:12 MarkDuplicates Tracking 49930 as yet unmatched pairs. 414 records in RAM.
INFO 2026-06-08 08:24:14 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:210,329,502
INFO 2026-06-08 08:24:14 MarkDuplicates Tracking 50652 as yet unmatched pairs. 65 records in RAM.
INFO 2026-06-08 08:24:16 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:220,151,319
INFO 2026-06-08 08:24:16 MarkDuplicates Tracking 51813 as yet unmatched pairs. 245 records in RAM.
INFO 2026-06-08 08:24:17 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:226,367,515
INFO 2026-06-08 08:24:17 MarkDuplicates Tracking 52798 as yet unmatched pairs. 280 records in RAM.
INFO 2026-06-08 08:24:20 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 2s. Last read position: chr1:228,499,288
INFO 2026-06-08 08:24:20 MarkDuplicates Tracking 53862 as yet unmatched pairs. 12 records in RAM.
INFO 2026-06-08 08:24:21 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:234,609,450
INFO 2026-06-08 08:24:21 MarkDuplicates Tracking 55766 as yet unmatched pairs. 153 records in RAM.
INFO 2026-06-08 08:24:23 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:244,857,596
INFO 2026-06-08 08:24:23 MarkDuplicates Tracking 57316 as yet unmatched pairs. 844 records in RAM.
INFO 2026-06-08 08:24:25 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 2s. Last read position: chr2:3,429,648
INFO 2026-06-08 08:24:25 MarkDuplicates Tracking 57781 as yet unmatched pairs. 56541 records in RAM.
INFO 2026-06-08 08:24:28 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 2s. Last read position: chr2:11,767,762
INFO 2026-06-08 08:24:28 MarkDuplicates Tracking 59458 as yet unmatched pairs. 58207 records in RAM.
INFO 2026-06-08 08:24:30 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 2s. Last read position: chr2:24,683,066
INFO 2026-06-08 08:24:30 MarkDuplicates Tracking 60264 as yet unmatched pairs. 58960 records in RAM.
INFO 2026-06-08 08:24:32 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 2s. Last read position: chr2:27,040,063
INFO 2026-06-08 08:24:32 MarkDuplicates Tracking 61155 as yet unmatched pairs. 59833 records in RAM.
INFO 2026-06-08 08:24:34 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:28,778,935
INFO 2026-06-08 08:24:34 MarkDuplicates Tracking 63073 as yet unmatched pairs. 61743 records in RAM.
INFO 2026-06-08 08:24:36 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,254
INFO 2026-06-08 08:24:36 MarkDuplicates Tracking 93123 as yet unmatched pairs. 59605 records in RAM.
INFO 2026-06-08 08:24:37 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:24:37 MarkDuplicates Tracking 448464 as yet unmatched pairs. 41223 records in RAM.
INFO 2026-06-08 08:24:39 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:24:39 MarkDuplicates Tracking 621397 as yet unmatched pairs. 31979 records in RAM.
INFO 2026-06-08 08:24:40 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:36,857,829
INFO 2026-06-08 08:24:40 MarkDuplicates Tracking 669142 as yet unmatched pairs. 29657 records in RAM.
INFO 2026-06-08 08:24:42 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:43,224,796
INFO 2026-06-08 08:24:42 MarkDuplicates Tracking 667816 as yet unmatched pairs. 28311 records in RAM.
INFO 2026-06-08 08:24:44 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:47,403,231
INFO 2026-06-08 08:24:44 MarkDuplicates Tracking 666807 as yet unmatched pairs. 27280 records in RAM.
INFO 2026-06-08 08:24:45 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:54,873,523
INFO 2026-06-08 08:24:45 MarkDuplicates Tracking 665727 as yet unmatched pairs. 26179 records in RAM.
INFO 2026-06-08 08:24:47 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:60,917,002
INFO 2026-06-08 08:24:47 MarkDuplicates Tracking 665519 as yet unmatched pairs. 25924 records in RAM.
INFO 2026-06-08 08:24:49 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 2s. Last read position: chr2:64,636,758
INFO 2026-06-08 08:24:49 MarkDuplicates Tracking 664411 as yet unmatched pairs. 24786 records in RAM.
INFO 2026-06-08 08:24:51 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:70,088,343
INFO 2026-06-08 08:24:51 MarkDuplicates Tracking 663650 as yet unmatched pairs. 24012 records in RAM.
INFO 2026-06-08 08:24:52 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:74,165,261
INFO 2026-06-08 08:24:52 MarkDuplicates Tracking 662984 as yet unmatched pairs. 23321 records in RAM.
INFO 2026-06-08 08:24:54 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:75,689,076
INFO 2026-06-08 08:24:54 MarkDuplicates Tracking 661442 as yet unmatched pairs. 21769 records in RAM.
INFO 2026-06-08 08:24:56 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:86,932,879
INFO 2026-06-08 08:24:56 MarkDuplicates Tracking 660355 as yet unmatched pairs. 20667 records in RAM.
INFO 2026-06-08 08:24:57 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:96,274,927
INFO 2026-06-08 08:24:57 MarkDuplicates Tracking 658741 as yet unmatched pairs. 19027 records in RAM.
INFO 2026-06-08 08:24:59 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:98,500,625
INFO 2026-06-08 08:24:59 MarkDuplicates Tracking 657564 as yet unmatched pairs. 17829 records in RAM.
INFO 2026-06-08 08:25:01 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:108,719,546
INFO 2026-06-08 08:25:01 MarkDuplicates Tracking 657318 as yet unmatched pairs. 17558 records in RAM.
INFO 2026-06-08 08:25:02 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:112,390,000
INFO 2026-06-08 08:25:02 MarkDuplicates Tracking 656176 as yet unmatched pairs. 16376 records in RAM.
INFO 2026-06-08 08:25:05 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 2s. Last read position: chr2:121,425,199
INFO 2026-06-08 08:25:05 MarkDuplicates Tracking 655503 as yet unmatched pairs. 15681 records in RAM.
INFO 2026-06-08 08:25:06 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:131,484,079
INFO 2026-06-08 08:25:06 MarkDuplicates Tracking 654764 as yet unmatched pairs. 14915 records in RAM.
INFO 2026-06-08 08:25:08 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:148,469,236
INFO 2026-06-08 08:25:08 MarkDuplicates Tracking 654012 as yet unmatched pairs. 14111 records in RAM.
INFO 2026-06-08 08:25:10 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 2s. Last read position: chr2:159,748,103
INFO 2026-06-08 08:25:10 MarkDuplicates Tracking 653561 as yet unmatched pairs. 13635 records in RAM.
INFO 2026-06-08 08:25:12 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 2s. Last read position: chr2:171,101,061
INFO 2026-06-08 08:25:12 MarkDuplicates Tracking 652401 as yet unmatched pairs. 12438 records in RAM.
INFO 2026-06-08 08:25:14 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:177,230,818
INFO 2026-06-08 08:25:14 MarkDuplicates Tracking 651132 as yet unmatched pairs. 11152 records in RAM.
INFO 2026-06-08 08:25:15 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:180,982,022
INFO 2026-06-08 08:25:15 MarkDuplicates Tracking 650282 as yet unmatched pairs. 10282 records in RAM.
INFO 2026-06-08 08:25:17 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:190,895,614
INFO 2026-06-08 08:25:17 MarkDuplicates Tracking 649478 as yet unmatched pairs. 9457 records in RAM.
INFO 2026-06-08 08:25:19 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:197,401,497
INFO 2026-06-08 08:25:19 MarkDuplicates Tracking 648604 as yet unmatched pairs. 8559 records in RAM.
INFO 2026-06-08 08:25:21 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:202,555,666
INFO 2026-06-08 08:25:21 MarkDuplicates Tracking 647485 as yet unmatched pairs. 7424 records in RAM.
INFO 2026-06-08 08:25:22 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:213,056,928
INFO 2026-06-08 08:25:22 MarkDuplicates Tracking 647258 as yet unmatched pairs. 7177 records in RAM.
INFO 2026-06-08 08:25:24 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:218,656,162
INFO 2026-06-08 08:25:24 MarkDuplicates Tracking 645858 as yet unmatched pairs. 5760 records in RAM.
INFO 2026-06-08 08:25:26 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:223,912,966
INFO 2026-06-08 08:25:26 MarkDuplicates Tracking 644713 as yet unmatched pairs. 4523 records in RAM.
INFO 2026-06-08 08:25:27 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:230,444,255
INFO 2026-06-08 08:25:27 MarkDuplicates Tracking 644265 as yet unmatched pairs. 4057 records in RAM.
INFO 2026-06-08 08:25:29 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:232,807,699
INFO 2026-06-08 08:25:29 MarkDuplicates Tracking 642881 as yet unmatched pairs. 2655 records in RAM.
INFO 2026-06-08 08:25:30 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:238,261,739
INFO 2026-06-08 08:25:30 MarkDuplicates Tracking 641889 as yet unmatched pairs. 1627 records in RAM.
INFO 2026-06-08 08:25:33 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 2s. Last read position: chr2:241,498,703
INFO 2026-06-08 08:25:33 MarkDuplicates Tracking 640942 as yet unmatched pairs. 658 records in RAM.
INFO 2026-06-08 08:25:35 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr3:5,195,257
INFO 2026-06-08 08:25:35 MarkDuplicates Tracking 640683 as yet unmatched pairs. 30373 records in RAM.
INFO 2026-06-08 08:25:36 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr3:10,249,242
INFO 2026-06-08 08:25:36 MarkDuplicates Tracking 639203 as yet unmatched pairs. 28883 records in RAM.
INFO 2026-06-08 08:25:38 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr3:13,351,930
INFO 2026-06-08 08:25:38 MarkDuplicates Tracking 637559 as yet unmatched pairs. 27231 records in RAM.
INFO 2026-06-08 08:25:40 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr3:15,738,567
INFO 2026-06-08 08:25:40 MarkDuplicates Tracking 636627 as yet unmatched pairs. 26276 records in RAM.
INFO 2026-06-08 08:25:41 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr3:22,382,234
INFO 2026-06-08 08:25:41 MarkDuplicates Tracking 635903 as yet unmatched pairs. 25536 records in RAM.
INFO 2026-06-08 08:25:43 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr3:33,425,724
INFO 2026-06-08 08:25:43 MarkDuplicates Tracking 634855 as yet unmatched pairs. 24463 records in RAM.
INFO 2026-06-08 08:25:45 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr3:39,410,760
INFO 2026-06-08 08:25:45 MarkDuplicates Tracking 636437 as yet unmatched pairs. 26018 records in RAM.
INFO 2026-06-08 08:25:47 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr3:44,631,147
INFO 2026-06-08 08:25:47 MarkDuplicates Tracking 632831 as yet unmatched pairs. 22391 records in RAM.
INFO 2026-06-08 08:25:48 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr3:47,057,026
INFO 2026-06-08 08:25:48 MarkDuplicates Tracking 631877 as yet unmatched pairs. 21410 records in RAM.
INFO 2026-06-08 08:25:50 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr3:47,917,101
INFO 2026-06-08 08:25:50 MarkDuplicates Tracking 631390 as yet unmatched pairs. 20908 records in RAM.
INFO 2026-06-08 08:25:52 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr3:49,016,158
INFO 2026-06-08 08:25:52 MarkDuplicates Tracking 629509 as yet unmatched pairs. 19014 records in RAM.
INFO 2026-06-08 08:25:54 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr3:49,698,675
INFO 2026-06-08 08:25:54 MarkDuplicates Tracking 628480 as yet unmatched pairs. 17974 records in RAM.
INFO 2026-06-08 08:25:56 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 2s. Last read position: chr3:51,393,945
INFO 2026-06-08 08:25:56 MarkDuplicates Tracking 627553 as yet unmatched pairs. 17007 records in RAM.
INFO 2026-06-08 08:25:57 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr3:52,473,757
INFO 2026-06-08 08:25:57 MarkDuplicates Tracking 626216 as yet unmatched pairs. 15653 records in RAM.
INFO 2026-06-08 08:25:59 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr3:56,668,547
INFO 2026-06-08 08:25:59 MarkDuplicates Tracking 625069 as yet unmatched pairs. 14500 records in RAM.
INFO 2026-06-08 08:26:01 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr3:69,048,552
INFO 2026-06-08 08:26:01 MarkDuplicates Tracking 624321 as yet unmatched pairs. 13725 records in RAM.
INFO 2026-06-08 08:26:02 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:101,585,439
INFO 2026-06-08 08:26:02 MarkDuplicates Tracking 623774 as yet unmatched pairs. 13157 records in RAM.
INFO 2026-06-08 08:26:04 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:113,619,691
INFO 2026-06-08 08:26:04 MarkDuplicates Tracking 622767 as yet unmatched pairs. 12136 records in RAM.
INFO 2026-06-08 08:26:06 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:121,748,020
INFO 2026-06-08 08:26:06 MarkDuplicates Tracking 621779 as yet unmatched pairs. 11121 records in RAM.
INFO 2026-06-08 08:26:08 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr3:123,955,705
INFO 2026-06-08 08:26:08 MarkDuplicates Tracking 621059 as yet unmatched pairs. 10383 records in RAM.
INFO 2026-06-08 08:26:09 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:128,806,382
INFO 2026-06-08 08:26:09 MarkDuplicates Tracking 620592 as yet unmatched pairs. 9873 records in RAM.
INFO 2026-06-08 08:26:11 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr3:133,573,984
INFO 2026-06-08 08:26:11 MarkDuplicates Tracking 618872 as yet unmatched pairs. 8121 records in RAM.
INFO 2026-06-08 08:26:13 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 2s. Last read position: chr3:141,876,745
INFO 2026-06-08 08:26:13 MarkDuplicates Tracking 617994 as yet unmatched pairs. 7213 records in RAM.
INFO 2026-06-08 08:26:15 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:152,316,047
INFO 2026-06-08 08:26:15 MarkDuplicates Tracking 617169 as yet unmatched pairs. 6374 records in RAM.
INFO 2026-06-08 08:26:17 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:168,059,254
INFO 2026-06-08 08:26:17 MarkDuplicates Tracking 616196 as yet unmatched pairs. 5369 records in RAM.
INFO 2026-06-08 08:26:19 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 2s. Last read position: chr3:179,218,222
INFO 2026-06-08 08:26:19 MarkDuplicates Tracking 615560 as yet unmatched pairs. 4693 records in RAM.
INFO 2026-06-08 08:26:21 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:184,174,922
INFO 2026-06-08 08:26:21 MarkDuplicates Tracking 614361 as yet unmatched pairs. 3473 records in RAM.
INFO 2026-06-08 08:26:23 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:186,900,232
INFO 2026-06-08 08:26:23 MarkDuplicates Tracking 613057 as yet unmatched pairs. 2149 records in RAM.
INFO 2026-06-08 08:26:24 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:195,908,686
INFO 2026-06-08 08:26:24 MarkDuplicates Tracking 612259 as yet unmatched pairs. 1323 records in RAM.
INFO 2026-06-08 08:26:26 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:198,193,341
INFO 2026-06-08 08:26:26 MarkDuplicates Tracking 610959 as yet unmatched pairs. 0 records in RAM.
INFO 2026-06-08 08:26:28 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr4:1,711,871
INFO 2026-06-08 08:26:28 MarkDuplicates Tracking 610556 as yet unmatched pairs. 15624 records in RAM.
INFO 2026-06-08 08:26:30 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr4:2,894,046
INFO 2026-06-08 08:26:30 MarkDuplicates Tracking 608986 as yet unmatched pairs. 14049 records in RAM.
INFO 2026-06-08 08:26:32 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr4:6,733,540
INFO 2026-06-08 08:26:32 MarkDuplicates Tracking 607284 as yet unmatched pairs. 12329 records in RAM.
INFO 2026-06-08 08:26:33 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr4:15,816,534
INFO 2026-06-08 08:26:33 MarkDuplicates Tracking 606492 as yet unmatched pairs. 11522 records in RAM.
INFO 2026-06-08 08:26:35 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 2s. Last read position: chr4:38,828,710
INFO 2026-06-08 08:26:35 MarkDuplicates Tracking 605328 as yet unmatched pairs. 10338 records in RAM.
INFO 2026-06-08 08:26:37 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr4:42,464,714
INFO 2026-06-08 08:26:37 MarkDuplicates Tracking 605001 as yet unmatched pairs. 9991 records in RAM.
INFO 2026-06-08 08:26:38 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr4:56,345,281
INFO 2026-06-08 08:26:38 MarkDuplicates Tracking 603670 as yet unmatched pairs. 8622 records in RAM.
INFO 2026-06-08 08:26:40 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr4:73,177,492
INFO 2026-06-08 08:26:40 MarkDuplicates Tracking 602528 as yet unmatched pairs. 7456 records in RAM.
INFO 2026-06-08 08:26:42 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr4:82,861,679
INFO 2026-06-08 08:26:42 MarkDuplicates Tracking 602164 as yet unmatched pairs. 7064 records in RAM.
INFO 2026-06-08 08:26:43 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr4:94,249,719
INFO 2026-06-08 08:26:43 MarkDuplicates Tracking 600825 as yet unmatched pairs. 5701 records in RAM.
INFO 2026-06-08 08:26:45 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr4:105,453,598
INFO 2026-06-08 08:26:45 MarkDuplicates Tracking 600336 as yet unmatched pairs. 5176 records in RAM.
INFO 2026-06-08 08:26:47 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr4:121,683,458
INFO 2026-06-08 08:26:47 MarkDuplicates Tracking 600068 as yet unmatched pairs. 4895 records in RAM.
INFO 2026-06-08 08:26:48 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr4:143,538,855
INFO 2026-06-08 08:26:48 MarkDuplicates Tracking 598556 as yet unmatched pairs. 3357 records in RAM.
INFO 2026-06-08 08:26:50 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr4:151,104,192
INFO 2026-06-08 08:26:50 MarkDuplicates Tracking 601595 as yet unmatched pairs. 6368 records in RAM.
INFO 2026-06-08 08:26:52 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 2s. Last read position: chr4:159,418,425
INFO 2026-06-08 08:26:52 MarkDuplicates Tracking 596745 as yet unmatched pairs. 1478 records in RAM.
INFO 2026-06-08 08:26:54 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr4:185,210,054
INFO 2026-06-08 08:26:54 MarkDuplicates Tracking 598350 as yet unmatched pairs. 3053 records in RAM.
INFO 2026-06-08 08:26:56 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr5:1,344,723
INFO 2026-06-08 08:26:56 MarkDuplicates Tracking 594890 as yet unmatched pairs. 27867 records in RAM.
INFO 2026-06-08 08:26:58 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 2s. Last read position: chr5:14,143,829
INFO 2026-06-08 08:26:58 MarkDuplicates Tracking 596379 as yet unmatched pairs. 29308 records in RAM.
INFO 2026-06-08 08:27:01 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 2s. Last read position: chr5:14,461,226
INFO 2026-06-08 08:27:01 MarkDuplicates Tracking 593663 as yet unmatched pairs. 26575 records in RAM.
INFO 2026-06-08 08:27:02 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr5:32,310,196
INFO 2026-06-08 08:27:02 MarkDuplicates Tracking 591088 as yet unmatched pairs. 23982 records in RAM.
INFO 2026-06-08 08:27:04 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr5:40,834,180
INFO 2026-06-08 08:27:04 MarkDuplicates Tracking 590740 as yet unmatched pairs. 23605 records in RAM.
INFO 2026-06-08 08:27:06 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr5:60,887,440
INFO 2026-06-08 08:27:06 MarkDuplicates Tracking 589533 as yet unmatched pairs. 22377 records in RAM.
INFO 2026-06-08 08:27:07 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr5:70,025,424
INFO 2026-06-08 08:27:07 MarkDuplicates Tracking 588804 as yet unmatched pairs. 21628 records in RAM.
INFO 2026-06-08 08:27:09 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr5:73,508,873
INFO 2026-06-08 08:27:09 MarkDuplicates Tracking 588260 as yet unmatched pairs. 21069 records in RAM.
INFO 2026-06-08 08:27:11 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr5:81,308,597
INFO 2026-06-08 08:27:11 MarkDuplicates Tracking 587452 as yet unmatched pairs. 20238 records in RAM.
INFO 2026-06-08 08:27:12 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr5:95,600,870
INFO 2026-06-08 08:27:12 MarkDuplicates Tracking 586671 as yet unmatched pairs. 19400 records in RAM.
INFO 2026-06-08 08:27:14 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr5:109,378,917
INFO 2026-06-08 08:27:14 MarkDuplicates Tracking 586229 as yet unmatched pairs. 18933 records in RAM.
INFO 2026-06-08 08:27:16 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr5:123,586,024
INFO 2026-06-08 08:27:16 MarkDuplicates Tracking 584974 as yet unmatched pairs. 17668 records in RAM.
INFO 2026-06-08 08:27:18 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr5:133,076,873
INFO 2026-06-08 08:27:18 MarkDuplicates Tracking 584203 as yet unmatched pairs. 16867 records in RAM.
INFO 2026-06-08 08:27:19 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr5:138,391,318
INFO 2026-06-08 08:27:19 MarkDuplicates Tracking 583317 as yet unmatched pairs. 15957 records in RAM.
INFO 2026-06-08 08:27:21 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr5:140,436,532
INFO 2026-06-08 08:27:21 MarkDuplicates Tracking 582194 as yet unmatched pairs. 14662 records in RAM.
INFO 2026-06-08 08:27:22 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr5:141,974,844
INFO 2026-06-08 08:27:22 MarkDuplicates Tracking 581135 as yet unmatched pairs. 13590 records in RAM.
INFO 2026-06-08 08:27:24 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 2s. Last read position: chr5:150,378,947
INFO 2026-06-08 08:27:24 MarkDuplicates Tracking 580156 as yet unmatched pairs. 12604 records in RAM.
INFO 2026-06-08 08:27:27 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 2s. Last read position: chr5:150,403,125
INFO 2026-06-08 08:27:27 MarkDuplicates Tracking 599034 as yet unmatched pairs. 31456 records in RAM.
INFO 2026-06-08 08:27:29 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,267
INFO 2026-06-08 08:27:29 MarkDuplicates Tracking 614149 as yet unmatched pairs. 46559 records in RAM.
INFO 2026-06-08 08:27:31 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 2s. Last read position: chr5:150,648,661
INFO 2026-06-08 08:27:31 MarkDuplicates Tracking 576977 as yet unmatched pairs. 9370 records in RAM.
INFO 2026-06-08 08:27:33 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 2s. Last read position: chr5:154,399,463
INFO 2026-06-08 08:27:33 MarkDuplicates Tracking 575557 as yet unmatched pairs. 7936 records in RAM.
INFO 2026-06-08 08:27:34 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:160,414,345
INFO 2026-06-08 08:27:34 MarkDuplicates Tracking 574554 as yet unmatched pairs. 6912 records in RAM.
INFO 2026-06-08 08:27:36 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:171,391,321
INFO 2026-06-08 08:27:36 MarkDuplicates Tracking 581175 as yet unmatched pairs. 13523 records in RAM.
INFO 2026-06-08 08:27:38 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr5:172,872,769
INFO 2026-06-08 08:27:38 MarkDuplicates Tracking 573217 as yet unmatched pairs. 5564 records in RAM.
INFO 2026-06-08 08:27:39 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:177,306,094
INFO 2026-06-08 08:27:39 MarkDuplicates Tracking 572520 as yet unmatched pairs. 4850 records in RAM.
INFO 2026-06-08 08:27:41 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:178,119,802
INFO 2026-06-08 08:27:41 MarkDuplicates Tracking 570625 as yet unmatched pairs. 2945 records in RAM.
INFO 2026-06-08 08:27:43 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:179,820,975
INFO 2026-06-08 08:27:43 MarkDuplicates Tracking 582506 as yet unmatched pairs. 14823 records in RAM.
INFO 2026-06-08 08:27:45 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:181,236,980
INFO 2026-06-08 08:27:45 MarkDuplicates Tracking 571587 as yet unmatched pairs. 3900 records in RAM.
INFO 2026-06-08 08:27:46 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr6:3,154,227
INFO 2026-06-08 08:27:46 MarkDuplicates Tracking 567061 as yet unmatched pairs. 33363 records in RAM.
INFO 2026-06-08 08:27:48 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr6:7,400,967
INFO 2026-06-08 08:27:48 MarkDuplicates Tracking 566067 as yet unmatched pairs. 32339 records in RAM.
INFO 2026-06-08 08:27:50 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr6:15,251,872
INFO 2026-06-08 08:27:50 MarkDuplicates Tracking 564994 as yet unmatched pairs. 31253 records in RAM.
INFO 2026-06-08 08:27:51 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr6:25,303,435
INFO 2026-06-08 08:27:51 MarkDuplicates Tracking 563928 as yet unmatched pairs. 30106 records in RAM.
INFO 2026-06-08 08:27:53 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr6:26,273,061
INFO 2026-06-08 08:27:53 MarkDuplicates Tracking 562948 as yet unmatched pairs. 29115 records in RAM.
INFO 2026-06-08 08:27:54 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr6:27,866,973
INFO 2026-06-08 08:27:54 MarkDuplicates Tracking 562280 as yet unmatched pairs. 28442 records in RAM.
INFO 2026-06-08 08:27:56 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr6:30,198,489
INFO 2026-06-08 08:27:56 MarkDuplicates Tracking 561139 as yet unmatched pairs. 27294 records in RAM.
INFO 2026-06-08 08:27:58 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr6:30,730,917
INFO 2026-06-08 08:27:58 MarkDuplicates Tracking 560084 as yet unmatched pairs. 26233 records in RAM.
INFO 2026-06-08 08:27:59 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr6:31,558,253
INFO 2026-06-08 08:27:59 MarkDuplicates Tracking 558993 as yet unmatched pairs. 25139 records in RAM.
INFO 2026-06-08 08:28:02 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 2s. Last read position: chr6:31,647,711
INFO 2026-06-08 08:28:02 MarkDuplicates Tracking 558279 as yet unmatched pairs. 24419 records in RAM.
INFO 2026-06-08 08:28:04 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 2s. Last read position: chr6:32,155,068
INFO 2026-06-08 08:28:04 MarkDuplicates Tracking 556730 as yet unmatched pairs. 22867 records in RAM.
INFO 2026-06-08 08:28:06 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 2s. Last read position: chr6:32,842,963
INFO 2026-06-08 08:28:06 MarkDuplicates Tracking 556413 as yet unmatched pairs. 22540 records in RAM.
INFO 2026-06-08 08:28:08 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr6:33,069,864
INFO 2026-06-08 08:28:08 MarkDuplicates Tracking 556266 as yet unmatched pairs. 22382 records in RAM.
INFO 2026-06-08 08:28:09 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr6:33,412,301
INFO 2026-06-08 08:28:09 MarkDuplicates Tracking 555753 as yet unmatched pairs. 21863 records in RAM.
INFO 2026-06-08 08:28:11 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:34,836,155
INFO 2026-06-08 08:28:11 MarkDuplicates Tracking 552619 as yet unmatched pairs. 18718 records in RAM.
INFO 2026-06-08 08:28:13 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr6:37,027,485
INFO 2026-06-08 08:28:13 MarkDuplicates Tracking 551672 as yet unmatched pairs. 17747 records in RAM.
INFO 2026-06-08 08:28:15 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:42,650,288
INFO 2026-06-08 08:28:15 MarkDuplicates Tracking 550262 as yet unmatched pairs. 16323 records in RAM.
INFO 2026-06-08 08:28:16 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr6:43,369,055
INFO 2026-06-08 08:28:16 MarkDuplicates Tracking 550017 as yet unmatched pairs. 16044 records in RAM.
INFO 2026-06-08 08:28:18 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:44,262,603
INFO 2026-06-08 08:28:18 MarkDuplicates Tracking 547794 as yet unmatched pairs. 13818 records in RAM.
INFO 2026-06-08 08:28:20 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:56,459,155
INFO 2026-06-08 08:28:20 MarkDuplicates Tracking 547891 as yet unmatched pairs. 13896 records in RAM.
INFO 2026-06-08 08:28:21 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:63,711,947
INFO 2026-06-08 08:28:21 MarkDuplicates Tracking 546036 as yet unmatched pairs. 12031 records in RAM.
INFO 2026-06-08 08:28:23 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:75,284,596
INFO 2026-06-08 08:28:23 MarkDuplicates Tracking 545233 as yet unmatched pairs. 11208 records in RAM.
INFO 2026-06-08 08:28:25 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:87,257,173
INFO 2026-06-08 08:28:25 MarkDuplicates Tracking 544686 as yet unmatched pairs. 10649 records in RAM.
INFO 2026-06-08 08:28:26 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:99,400,551
INFO 2026-06-08 08:28:26 MarkDuplicates Tracking 543808 as yet unmatched pairs. 9748 records in RAM.
INFO 2026-06-08 08:28:28 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:109,447,208
INFO 2026-06-08 08:28:28 MarkDuplicates Tracking 543226 as yet unmatched pairs. 9151 records in RAM.
INFO 2026-06-08 08:28:30 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:116,278,759
INFO 2026-06-08 08:28:30 MarkDuplicates Tracking 541520 as yet unmatched pairs. 7436 records in RAM.
INFO 2026-06-08 08:28:32 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 2s. Last read position: chr6:130,894,382
INFO 2026-06-08 08:28:32 MarkDuplicates Tracking 540431 as yet unmatched pairs. 6333 records in RAM.
INFO 2026-06-08 08:28:34 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 2s. Last read position: chr6:138,953,481
INFO 2026-06-08 08:28:34 MarkDuplicates Tracking 539373 as yet unmatched pairs. 5262 records in RAM.
INFO 2026-06-08 08:28:36 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 2s. Last read position: chr6:149,378,133
INFO 2026-06-08 08:28:36 MarkDuplicates Tracking 538655 as yet unmatched pairs. 4526 records in RAM.
INFO 2026-06-08 08:28:38 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr6:154,857,999
INFO 2026-06-08 08:28:38 MarkDuplicates Tracking 537298 as yet unmatched pairs. 3143 records in RAM.
INFO 2026-06-08 08:28:40 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:158,771,243
INFO 2026-06-08 08:28:40 MarkDuplicates Tracking 536358 as yet unmatched pairs. 2178 records in RAM.
INFO 2026-06-08 08:28:41 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:166,372,323
INFO 2026-06-08 08:28:41 MarkDuplicates Tracking 534984 as yet unmatched pairs. 789 records in RAM.
INFO 2026-06-08 08:28:43 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr7:1,010,039
INFO 2026-06-08 08:28:43 MarkDuplicates Tracking 533849 as yet unmatched pairs. 33372 records in RAM.
INFO 2026-06-08 08:28:45 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr7:2,647,787
INFO 2026-06-08 08:28:45 MarkDuplicates Tracking 533153 as yet unmatched pairs. 32655 records in RAM.
INFO 2026-06-08 08:28:47 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr7:5,371,259
INFO 2026-06-08 08:28:47 MarkDuplicates Tracking 531561 as yet unmatched pairs. 31046 records in RAM.
INFO 2026-06-08 08:28:48 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,324
INFO 2026-06-08 08:28:48 MarkDuplicates Tracking 538402 as yet unmatched pairs. 37880 records in RAM.
INFO 2026-06-08 08:28:50 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr7:6,035,764
INFO 2026-06-08 08:28:50 MarkDuplicates Tracking 527982 as yet unmatched pairs. 27453 records in RAM.
INFO 2026-06-08 08:28:52 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr7:20,154,279
INFO 2026-06-08 08:28:52 MarkDuplicates Tracking 526901 as yet unmatched pairs. 26363 records in RAM.
INFO 2026-06-08 08:28:53 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr7:26,208,475
INFO 2026-06-08 08:28:53 MarkDuplicates Tracking 526743 as yet unmatched pairs. 26188 records in RAM.
INFO 2026-06-08 08:28:55 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr7:36,894,969
INFO 2026-06-08 08:28:55 MarkDuplicates Tracking 525222 as yet unmatched pairs. 24638 records in RAM.
INFO 2026-06-08 08:28:56 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr7:44,074,279
INFO 2026-06-08 08:28:56 MarkDuplicates Tracking 524037 as yet unmatched pairs. 23417 records in RAM.
INFO 2026-06-08 08:28:58 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr7:44,972,152
INFO 2026-06-08 08:28:58 MarkDuplicates Tracking 523435 as yet unmatched pairs. 22811 records in RAM.
INFO 2026-06-08 08:29:00 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr7:65,873,376
INFO 2026-06-08 08:29:00 MarkDuplicates Tracking 521935 as yet unmatched pairs. 21286 records in RAM.
INFO 2026-06-08 08:29:01 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr7:73,065,570
INFO 2026-06-08 08:29:01 MarkDuplicates Tracking 520777 as yet unmatched pairs. 20111 records in RAM.
INFO 2026-06-08 08:29:03 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr7:74,223,768
INFO 2026-06-08 08:29:03 MarkDuplicates Tracking 520528 as yet unmatched pairs. 19846 records in RAM.
INFO 2026-06-08 08:29:04 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr7:75,296,122
INFO 2026-06-08 08:29:04 MarkDuplicates Tracking 519192 as yet unmatched pairs. 18506 records in RAM.
INFO 2026-06-08 08:29:06 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:76,515,063
INFO 2026-06-08 08:29:06 MarkDuplicates Tracking 518245 as yet unmatched pairs. 17548 records in RAM.
INFO 2026-06-08 08:29:08 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:92,001,485
INFO 2026-06-08 08:29:08 MarkDuplicates Tracking 517656 as yet unmatched pairs. 16941 records in RAM.
INFO 2026-06-08 08:29:11 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 2s. Last read position: chr7:96,277,298
INFO 2026-06-08 08:29:11 MarkDuplicates Tracking 516941 as yet unmatched pairs. 16216 records in RAM.
INFO 2026-06-08 08:29:13 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:99,454,098
INFO 2026-06-08 08:29:13 MarkDuplicates Tracking 515888 as yet unmatched pairs. 15138 records in RAM.
INFO 2026-06-08 08:29:14 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:100,353,716
INFO 2026-06-08 08:29:14 MarkDuplicates Tracking 515437 as yet unmatched pairs. 14674 records in RAM.
INFO 2026-06-08 08:29:16 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:100,884,422
INFO 2026-06-08 08:29:16 MarkDuplicates Tracking 512970 as yet unmatched pairs. 12193 records in RAM.
INFO 2026-06-08 08:29:17 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:102,540,041
INFO 2026-06-08 08:29:17 MarkDuplicates Tracking 512551 as yet unmatched pairs. 11746 records in RAM.
INFO 2026-06-08 08:29:19 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr7:105,203,647
INFO 2026-06-08 08:29:19 MarkDuplicates Tracking 511407 as yet unmatched pairs. 10593 records in RAM.
INFO 2026-06-08 08:29:20 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr7:120,415,121
INFO 2026-06-08 08:29:20 MarkDuplicates Tracking 510512 as yet unmatched pairs. 9648 records in RAM.
INFO 2026-06-08 08:29:22 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr7:127,929,277
INFO 2026-06-08 08:29:22 MarkDuplicates Tracking 512176 as yet unmatched pairs. 11304 records in RAM.
INFO 2026-06-08 08:29:24 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:130,166,378
INFO 2026-06-08 08:29:24 MarkDuplicates Tracking 508846 as yet unmatched pairs. 7949 records in RAM.
INFO 2026-06-08 08:29:25 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:135,977,185
INFO 2026-06-08 08:29:25 MarkDuplicates Tracking 507923 as yet unmatched pairs. 7013 records in RAM.
INFO 2026-06-08 08:29:27 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:139,569,099
INFO 2026-06-08 08:29:27 MarkDuplicates Tracking 506662 as yet unmatched pairs. 5737 records in RAM.
INFO 2026-06-08 08:29:29 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:141,778,944
INFO 2026-06-08 08:29:29 MarkDuplicates Tracking 505438 as yet unmatched pairs. 4508 records in RAM.
INFO 2026-06-08 08:29:30 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:149,474,694
INFO 2026-06-08 08:29:30 MarkDuplicates Tracking 504664 as yet unmatched pairs. 3727 records in RAM.
INFO 2026-06-08 08:29:32 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:151,081,756
INFO 2026-06-08 08:29:32 MarkDuplicates Tracking 503156 as yet unmatched pairs. 2208 records in RAM.
INFO 2026-06-08 08:29:34 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 2s. Last read position: chr7:155,711,439
INFO 2026-06-08 08:29:34 MarkDuplicates Tracking 501807 as yet unmatched pairs. 854 records in RAM.
INFO 2026-06-08 08:29:36 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr8:8,891,746
INFO 2026-06-08 08:29:36 MarkDuplicates Tracking 500799 as yet unmatched pairs. 21475 records in RAM.
INFO 2026-06-08 08:29:38 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr8:19,154,634
INFO 2026-06-08 08:29:38 MarkDuplicates Tracking 499216 as yet unmatched pairs. 19860 records in RAM.
INFO 2026-06-08 08:29:40 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 2s. Last read position: chr8:23,028,348
INFO 2026-06-08 08:29:40 MarkDuplicates Tracking 498653 as yet unmatched pairs. 19284 records in RAM.
INFO 2026-06-08 08:29:42 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr8:29,113,426
INFO 2026-06-08 08:29:42 MarkDuplicates Tracking 497112 as yet unmatched pairs. 17717 records in RAM.
INFO 2026-06-08 08:29:43 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr8:38,329,839
INFO 2026-06-08 08:29:43 MarkDuplicates Tracking 496980 as yet unmatched pairs. 17576 records in RAM.
INFO 2026-06-08 08:29:45 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr8:38,846,710
INFO 2026-06-08 08:29:45 MarkDuplicates Tracking 498756 as yet unmatched pairs. 19343 records in RAM.
INFO 2026-06-08 08:29:47 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr8:47,863,533
INFO 2026-06-08 08:29:47 MarkDuplicates Tracking 494575 as yet unmatched pairs. 15153 records in RAM.
INFO 2026-06-08 08:29:48 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr8:60,741,512
INFO 2026-06-08 08:29:48 MarkDuplicates Tracking 493651 as yet unmatched pairs. 14208 records in RAM.
INFO 2026-06-08 08:29:50 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr8:70,141,201
INFO 2026-06-08 08:29:50 MarkDuplicates Tracking 494162 as yet unmatched pairs. 14669 records in RAM.
INFO 2026-06-08 08:29:52 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr8:80,099,814
INFO 2026-06-08 08:29:52 MarkDuplicates Tracking 491532 as yet unmatched pairs. 12020 records in RAM.
INFO 2026-06-08 08:29:53 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr8:97,644,704
INFO 2026-06-08 08:29:53 MarkDuplicates Tracking 492109 as yet unmatched pairs. 12587 records in RAM.
INFO 2026-06-08 08:29:55 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr8:100,706,927
INFO 2026-06-08 08:29:55 MarkDuplicates Tracking 491469 as yet unmatched pairs. 11939 records in RAM.
INFO 2026-06-08 08:29:57 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr8:102,345,506
INFO 2026-06-08 08:29:57 MarkDuplicates Tracking 489567 as yet unmatched pairs. 10026 records in RAM.
INFO 2026-06-08 08:29:58 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr8:120,538,870
INFO 2026-06-08 08:29:58 MarkDuplicates Tracking 488177 as yet unmatched pairs. 8613 records in RAM.
INFO 2026-06-08 08:30:00 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr8:127,740,707
INFO 2026-06-08 08:30:00 MarkDuplicates Tracking 487447 as yet unmatched pairs. 7863 records in RAM.
INFO 2026-06-08 08:30:02 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr8:141,422,267
INFO 2026-06-08 08:30:02 MarkDuplicates Tracking 486339 as yet unmatched pairs. 6712 records in RAM.
INFO 2026-06-08 08:30:03 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr8:143,803,402
INFO 2026-06-08 08:30:03 MarkDuplicates Tracking 484962 as yet unmatched pairs. 5324 records in RAM.
INFO 2026-06-08 08:30:05 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr8:143,985,723
INFO 2026-06-08 08:30:05 MarkDuplicates Tracking 483702 as yet unmatched pairs. 4063 records in RAM.
INFO 2026-06-08 08:30:08 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 2s. Last read position: chr8:144,397,976
INFO 2026-06-08 08:30:08 MarkDuplicates Tracking 481222 as yet unmatched pairs. 1574 records in RAM.
INFO 2026-06-08 08:31:06 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 58s. Last read position: chr9:396,862
INFO 2026-06-08 08:31:06 MarkDuplicates Tracking 479758 as yet unmatched pairs. 27096 records in RAM.
INFO 2026-06-08 08:31:08 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr9:5,763,522
INFO 2026-06-08 08:31:08 MarkDuplicates Tracking 479522 as yet unmatched pairs. 26841 records in RAM.
INFO 2026-06-08 08:31:10 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr9:9,442,127
INFO 2026-06-08 08:31:10 MarkDuplicates Tracking 481728 as yet unmatched pairs. 29014 records in RAM.
INFO 2026-06-08 08:31:11 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr9:19,303,118
INFO 2026-06-08 08:31:11 MarkDuplicates Tracking 476293 as yet unmatched pairs. 23573 records in RAM.
INFO 2026-06-08 08:31:13 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr9:33,166,837
INFO 2026-06-08 08:31:13 MarkDuplicates Tracking 478174 as yet unmatched pairs. 25430 records in RAM.
INFO 2026-06-08 08:31:15 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr9:35,101,941
INFO 2026-06-08 08:31:15 MarkDuplicates Tracking 474695 as yet unmatched pairs. 21946 records in RAM.
INFO 2026-06-08 08:31:16 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr9:36,834,310
INFO 2026-06-08 08:31:16 MarkDuplicates Tracking 473070 as yet unmatched pairs. 20283 records in RAM.
INFO 2026-06-08 08:31:18 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr9:37,015,097
INFO 2026-06-08 08:31:18 MarkDuplicates Tracking 473247 as yet unmatched pairs. 20452 records in RAM.
INFO 2026-06-08 08:31:19 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr9:68,292,970
INFO 2026-06-08 08:31:19 MarkDuplicates Tracking 471222 as yet unmatched pairs. 18409 records in RAM.
INFO 2026-06-08 08:31:21 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr9:83,977,735
INFO 2026-06-08 08:31:21 MarkDuplicates Tracking 470904 as yet unmatched pairs. 18082 records in RAM.
INFO 2026-06-08 08:31:23 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 2s. Last read position: chr9:92,229,013
INFO 2026-06-08 08:31:23 MarkDuplicates Tracking 470480 as yet unmatched pairs. 17653 records in RAM.
INFO 2026-06-08 08:31:25 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr9:95,966,624
INFO 2026-06-08 08:31:25 MarkDuplicates Tracking 468537 as yet unmatched pairs. 15706 records in RAM.
INFO 2026-06-08 08:31:27 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr9:107,306,524
INFO 2026-06-08 08:31:27 MarkDuplicates Tracking 468258 as yet unmatched pairs. 15423 records in RAM.
INFO 2026-06-08 08:31:28 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr9:113,499,102
INFO 2026-06-08 08:31:28 MarkDuplicates Tracking 466364 as yet unmatched pairs. 13526 records in RAM.
INFO 2026-06-08 08:31:30 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr9:121,088,381
INFO 2026-06-08 08:31:30 MarkDuplicates Tracking 466453 as yet unmatched pairs. 13590 records in RAM.
INFO 2026-06-08 08:31:32 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr9:124,262,091
INFO 2026-06-08 08:31:32 MarkDuplicates Tracking 465379 as yet unmatched pairs. 12496 records in RAM.
INFO 2026-06-08 08:31:33 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr9:127,487,690
INFO 2026-06-08 08:31:33 MarkDuplicates Tracking 463779 as yet unmatched pairs. 10890 records in RAM.
INFO 2026-06-08 08:31:35 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr9:128,523,720
INFO 2026-06-08 08:31:35 MarkDuplicates Tracking 462376 as yet unmatched pairs. 9468 records in RAM.
INFO 2026-06-08 08:31:37 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr9:129,829,453
INFO 2026-06-08 08:31:37 MarkDuplicates Tracking 461227 as yet unmatched pairs. 8309 records in RAM.
INFO 2026-06-08 08:31:38 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr9:131,144,744
INFO 2026-06-08 08:31:38 MarkDuplicates Tracking 460286 as yet unmatched pairs. 7358 records in RAM.
INFO 2026-06-08 08:31:40 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr9:132,327,332
INFO 2026-06-08 08:31:40 MarkDuplicates Tracking 459458 as yet unmatched pairs. 6515 records in RAM.
INFO 2026-06-08 08:31:42 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr9:133,777,404
INFO 2026-06-08 08:31:42 MarkDuplicates Tracking 458552 as yet unmatched pairs. 5597 records in RAM.
INFO 2026-06-08 08:31:43 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr9:136,474,424
INFO 2026-06-08 08:31:43 MarkDuplicates Tracking 457436 as yet unmatched pairs. 4476 records in RAM.
INFO 2026-06-08 08:31:45 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 2s. Last read position: chr9:136,859,727
INFO 2026-06-08 08:31:45 MarkDuplicates Tracking 455397 as yet unmatched pairs. 2421 records in RAM.
INFO 2026-06-08 08:31:48 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 2s. Last read position: chr9:137,457,543
INFO 2026-06-08 08:31:48 MarkDuplicates Tracking 454279 as yet unmatched pairs. 1283 records in RAM.
INFO 2026-06-08 08:31:50 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 2s. Last read position: chr10:5,747,723
INFO 2026-06-08 08:31:50 MarkDuplicates Tracking 452625 as yet unmatched pairs. 18868 records in RAM.
INFO 2026-06-08 08:31:52 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr10:12,349,826
INFO 2026-06-08 08:31:52 MarkDuplicates Tracking 451678 as yet unmatched pairs. 17915 records in RAM.
INFO 2026-06-08 08:31:53 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr10:22,573,385
INFO 2026-06-08 08:31:53 MarkDuplicates Tracking 450954 as yet unmatched pairs. 17180 records in RAM.
INFO 2026-06-08 08:31:55 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr10:32,017,149
INFO 2026-06-08 08:31:55 MarkDuplicates Tracking 450643 as yet unmatched pairs. 16857 records in RAM.
INFO 2026-06-08 08:31:57 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr10:43,387,425
INFO 2026-06-08 08:31:57 MarkDuplicates Tracking 449255 as yet unmatched pairs. 15440 records in RAM.
INFO 2026-06-08 08:31:58 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr10:48,709,716
INFO 2026-06-08 08:31:58 MarkDuplicates Tracking 448688 as yet unmatched pairs. 14869 records in RAM.
INFO 2026-06-08 08:32:00 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr10:58,387,040
INFO 2026-06-08 08:32:00 MarkDuplicates Tracking 447348 as yet unmatched pairs. 13524 records in RAM.
INFO 2026-06-08 08:32:01 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr10:68,973,636
INFO 2026-06-08 08:32:01 MarkDuplicates Tracking 446504 as yet unmatched pairs. 12665 records in RAM.
INFO 2026-06-08 08:32:03 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr10:73,495,812
INFO 2026-06-08 08:32:03 MarkDuplicates Tracking 445420 as yet unmatched pairs. 11566 records in RAM.
INFO 2026-06-08 08:32:05 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr10:77,977,580
INFO 2026-06-08 08:32:05 MarkDuplicates Tracking 444338 as yet unmatched pairs. 10449 records in RAM.
INFO 2026-06-08 08:32:06 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr10:87,053,342
INFO 2026-06-08 08:32:06 MarkDuplicates Tracking 444318 as yet unmatched pairs. 10421 records in RAM.
INFO 2026-06-08 08:32:08 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr10:89,339,377
INFO 2026-06-08 08:32:08 MarkDuplicates Tracking 442933 as yet unmatched pairs. 9027 records in RAM.
INFO 2026-06-08 08:32:09 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr10:95,839,705
INFO 2026-06-08 08:32:09 MarkDuplicates Tracking 442069 as yet unmatched pairs. 8150 records in RAM.
INFO 2026-06-08 08:32:11 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr10:96,833,055
INFO 2026-06-08 08:32:11 MarkDuplicates Tracking 440702 as yet unmatched pairs. 6774 records in RAM.
INFO 2026-06-08 08:32:13 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 2s. Last read position: chr10:100,536,034
INFO 2026-06-08 08:32:13 MarkDuplicates Tracking 439759 as yet unmatched pairs. 5817 records in RAM.
INFO 2026-06-08 08:32:15 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 2s. Last read position: chr10:102,395,888
INFO 2026-06-08 08:32:15 MarkDuplicates Tracking 439359 as yet unmatched pairs. 5413 records in RAM.
INFO 2026-06-08 08:32:17 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr10:110,498,259
INFO 2026-06-08 08:32:17 MarkDuplicates Tracking 437511 as yet unmatched pairs. 3531 records in RAM.
INFO 2026-06-08 08:32:19 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr10:119,160,920
INFO 2026-06-08 08:32:19 MarkDuplicates Tracking 436324 as yet unmatched pairs. 2332 records in RAM.
INFO 2026-06-08 08:32:20 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr10:128,106,245
INFO 2026-06-08 08:32:20 MarkDuplicates Tracking 435383 as yet unmatched pairs. 1383 records in RAM.
INFO 2026-06-08 08:32:22 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr11:218,997
INFO 2026-06-08 08:32:22 MarkDuplicates Tracking 434247 as yet unmatched pairs. 38024 records in RAM.
INFO 2026-06-08 08:32:24 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr11:607,604
INFO 2026-06-08 08:32:24 MarkDuplicates Tracking 433102 as yet unmatched pairs. 36874 records in RAM.
INFO 2026-06-08 08:32:26 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr11:1,226,694
INFO 2026-06-08 08:32:26 MarkDuplicates Tracking 431051 as yet unmatched pairs. 34816 records in RAM.
INFO 2026-06-08 08:32:27 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr11:3,856,319
INFO 2026-06-08 08:32:27 MarkDuplicates Tracking 430614 as yet unmatched pairs. 34368 records in RAM.
INFO 2026-06-08 08:32:29 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr11:7,509,942
INFO 2026-06-08 08:32:29 MarkDuplicates Tracking 428481 as yet unmatched pairs. 32206 records in RAM.
INFO 2026-06-08 08:32:30 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr11:11,352,885
INFO 2026-06-08 08:32:30 MarkDuplicates Tracking 427535 as yet unmatched pairs. 31252 records in RAM.
INFO 2026-06-08 08:32:32 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr11:22,236,247
INFO 2026-06-08 08:32:32 MarkDuplicates Tracking 426741 as yet unmatched pairs. 30434 records in RAM.
INFO 2026-06-08 08:32:34 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr11:35,229,177
INFO 2026-06-08 08:32:34 MarkDuplicates Tracking 426620 as yet unmatched pairs. 30292 records in RAM.
INFO 2026-06-08 08:32:35 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr11:46,659,408
INFO 2026-06-08 08:32:35 MarkDuplicates Tracking 425461 as yet unmatched pairs. 29110 records in RAM.
INFO 2026-06-08 08:32:37 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr11:56,690,337
INFO 2026-06-08 08:32:37 MarkDuplicates Tracking 423789 as yet unmatched pairs. 27432 records in RAM.
INFO 2026-06-08 08:32:39 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr11:59,659,456
INFO 2026-06-08 08:32:39 MarkDuplicates Tracking 423060 as yet unmatched pairs. 26656 records in RAM.
INFO 2026-06-08 08:32:41 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr11:61,300,102
INFO 2026-06-08 08:32:41 MarkDuplicates Tracking 422033 as yet unmatched pairs. 25615 records in RAM.
INFO 2026-06-08 08:32:43 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 2s. Last read position: chr11:62,533,700
INFO 2026-06-08 08:32:43 MarkDuplicates Tracking 420884 as yet unmatched pairs. 24406 records in RAM.
INFO 2026-06-08 08:32:45 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 2s. Last read position: chr11:62,787,259
INFO 2026-06-08 08:32:45 MarkDuplicates Tracking 419626 as yet unmatched pairs. 23139 records in RAM.
INFO 2026-06-08 08:32:47 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr11:64,231,786
INFO 2026-06-08 08:32:47 MarkDuplicates Tracking 418704 as yet unmatched pairs. 22209 records in RAM.
INFO 2026-06-08 08:32:48 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr11:64,769,585
INFO 2026-06-08 08:32:48 MarkDuplicates Tracking 417257 as yet unmatched pairs. 20759 records in RAM.
INFO 2026-06-08 08:32:50 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr11:65,128,437
INFO 2026-06-08 08:32:50 MarkDuplicates Tracking 416076 as yet unmatched pairs. 19577 records in RAM.
INFO 2026-06-08 08:32:52 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr11:65,501,509
INFO 2026-06-08 08:32:52 MarkDuplicates Tracking 414942 as yet unmatched pairs. 18409 records in RAM.
INFO 2026-06-08 08:32:53 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr11:65,616,350
INFO 2026-06-08 08:32:53 MarkDuplicates Tracking 413459 as yet unmatched pairs. 16919 records in RAM.
INFO 2026-06-08 08:32:55 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr11:65,885,537
INFO 2026-06-08 08:32:55 MarkDuplicates Tracking 412206 as yet unmatched pairs. 15654 records in RAM.
INFO 2026-06-08 08:32:57 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr11:66,625,062
INFO 2026-06-08 08:32:57 MarkDuplicates Tracking 411103 as yet unmatched pairs. 14549 records in RAM.
INFO 2026-06-08 08:32:58 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr11:67,434,673
INFO 2026-06-08 08:32:58 MarkDuplicates Tracking 409110 as yet unmatched pairs. 12553 records in RAM.
INFO 2026-06-08 08:33:00 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr11:68,044,228
INFO 2026-06-08 08:33:00 MarkDuplicates Tracking 408781 as yet unmatched pairs. 12221 records in RAM.
INFO 2026-06-08 08:33:02 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr11:71,989,394
INFO 2026-06-08 08:33:02 MarkDuplicates Tracking 406083 as yet unmatched pairs. 9501 records in RAM.
INFO 2026-06-08 08:33:03 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr11:72,781,011
INFO 2026-06-08 08:33:03 MarkDuplicates Tracking 404781 as yet unmatched pairs. 8191 records in RAM.
INFO 2026-06-08 08:33:05 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr11:75,404,693
INFO 2026-06-08 08:33:05 MarkDuplicates Tracking 404753 as yet unmatched pairs. 8153 records in RAM.
INFO 2026-06-08 08:33:07 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 2s. Last read position: chr11:85,971,782
INFO 2026-06-08 08:33:07 MarkDuplicates Tracking 402764 as yet unmatched pairs. 6158 records in RAM.
INFO 2026-06-08 08:33:09 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 2s. Last read position: chr11:96,341,529
INFO 2026-06-08 08:33:09 MarkDuplicates Tracking 402714 as yet unmatched pairs. 6083 records in RAM.
INFO 2026-06-08 08:33:11 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:111,031,024
INFO 2026-06-08 08:33:11 MarkDuplicates Tracking 400685 as yet unmatched pairs. 4037 records in RAM.
INFO 2026-06-08 08:33:13 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr11:117,918,630
INFO 2026-06-08 08:33:13 MarkDuplicates Tracking 399649 as yet unmatched pairs. 2993 records in RAM.
INFO 2026-06-08 08:33:14 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr11:119,055,814
INFO 2026-06-08 08:33:14 MarkDuplicates Tracking 399154 as yet unmatched pairs. 2486 records in RAM.
INFO 2026-06-08 08:33:16 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr11:123,729,125
INFO 2026-06-08 08:33:16 MarkDuplicates Tracking 397995 as yet unmatched pairs. 1301 records in RAM.
INFO 2026-06-08 08:33:17 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr11:130,915,418
INFO 2026-06-08 08:33:17 MarkDuplicates Tracking 397390 as yet unmatched pairs. 690 records in RAM.
INFO 2026-06-08 08:33:19 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr12:2,803,149
INFO 2026-06-08 08:33:19 MarkDuplicates Tracking 396077 as yet unmatched pairs. 33073 records in RAM.
INFO 2026-06-08 08:33:21 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr12:6,560,434
INFO 2026-06-08 08:33:21 MarkDuplicates Tracking 394966 as yet unmatched pairs. 31957 records in RAM.
INFO 2026-06-08 08:33:22 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr12:6,951,420
INFO 2026-06-08 08:33:22 MarkDuplicates Tracking 395014 as yet unmatched pairs. 32001 records in RAM.
INFO 2026-06-08 08:33:24 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr12:9,695,311
INFO 2026-06-08 08:33:24 MarkDuplicates Tracking 393896 as yet unmatched pairs. 30872 records in RAM.
INFO 2026-06-08 08:33:26 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr12:12,124,591
INFO 2026-06-08 08:33:26 MarkDuplicates Tracking 391870 as yet unmatched pairs. 28837 records in RAM.
INFO 2026-06-08 08:33:27 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr12:22,666,018
INFO 2026-06-08 08:33:27 MarkDuplicates Tracking 391182 as yet unmatched pairs. 28146 records in RAM.
INFO 2026-06-08 08:33:29 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr12:26,832,682
INFO 2026-06-08 08:33:29 MarkDuplicates Tracking 390684 as yet unmatched pairs. 27641 records in RAM.
INFO 2026-06-08 08:33:31 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 2s. Last read position: chr12:39,370,221
INFO 2026-06-08 08:33:31 MarkDuplicates Tracking 389555 as yet unmatched pairs. 26501 records in RAM.
INFO 2026-06-08 08:33:33 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr12:46,771,291
INFO 2026-06-08 08:33:33 MarkDuplicates Tracking 388487 as yet unmatched pairs. 25426 records in RAM.
INFO 2026-06-08 08:33:35 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 2s. Last read position: chr12:49,044,825
INFO 2026-06-08 08:33:35 MarkDuplicates Tracking 387898 as yet unmatched pairs. 24835 records in RAM.
INFO 2026-06-08 08:33:37 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr12:49,762,915
INFO 2026-06-08 08:33:37 MarkDuplicates Tracking 386977 as yet unmatched pairs. 23906 records in RAM.
INFO 2026-06-08 08:33:39 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr12:53,192,768
INFO 2026-06-08 08:33:39 MarkDuplicates Tracking 386692 as yet unmatched pairs. 23598 records in RAM.
INFO 2026-06-08 08:33:40 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr12:53,665,269
INFO 2026-06-08 08:33:40 MarkDuplicates Tracking 386949 as yet unmatched pairs. 23846 records in RAM.
INFO 2026-06-08 08:33:42 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr12:55,789,115
INFO 2026-06-08 08:33:42 MarkDuplicates Tracking 384039 as yet unmatched pairs. 20935 records in RAM.
INFO 2026-06-08 08:33:43 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr12:56,326,718
INFO 2026-06-08 08:33:43 MarkDuplicates Tracking 383369 as yet unmatched pairs. 20259 records in RAM.
INFO 2026-06-08 08:33:45 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr12:56,720,087
INFO 2026-06-08 08:33:45 MarkDuplicates Tracking 382072 as yet unmatched pairs. 18961 records in RAM.
INFO 2026-06-08 08:33:47 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr12:57,106,225
INFO 2026-06-08 08:33:47 MarkDuplicates Tracking 384983 as yet unmatched pairs. 21862 records in RAM.
INFO 2026-06-08 08:33:49 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr12:57,527,888
INFO 2026-06-08 08:33:49 MarkDuplicates Tracking 380599 as yet unmatched pairs. 17474 records in RAM.
INFO 2026-06-08 08:33:50 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr12:64,474,338
INFO 2026-06-08 08:33:50 MarkDuplicates Tracking 378704 as yet unmatched pairs. 15572 records in RAM.
INFO 2026-06-08 08:33:52 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr12:70,006,030
INFO 2026-06-08 08:33:52 MarkDuplicates Tracking 377759 as yet unmatched pairs. 14611 records in RAM.
INFO 2026-06-08 08:33:53 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr12:92,143,305
INFO 2026-06-08 08:33:53 MarkDuplicates Tracking 376993 as yet unmatched pairs. 13833 records in RAM.
INFO 2026-06-08 08:33:55 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr12:96,269,138
INFO 2026-06-08 08:33:55 MarkDuplicates Tracking 376065 as yet unmatched pairs. 12872 records in RAM.
INFO 2026-06-08 08:33:57 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr12:103,984,785
INFO 2026-06-08 08:33:57 MarkDuplicates Tracking 375226 as yet unmatched pairs. 12017 records in RAM.
INFO 2026-06-08 08:33:59 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 2s. Last read position: chr12:108,641,590
INFO 2026-06-08 08:33:59 MarkDuplicates Tracking 374109 as yet unmatched pairs. 10892 records in RAM.
INFO 2026-06-08 08:34:01 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr12:111,418,711
INFO 2026-06-08 08:34:01 MarkDuplicates Tracking 375579 as yet unmatched pairs. 12349 records in RAM.
INFO 2026-06-08 08:34:03 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr12:112,408,269
INFO 2026-06-08 08:34:03 MarkDuplicates Tracking 372942 as yet unmatched pairs. 9693 records in RAM.
INFO 2026-06-08 08:34:04 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr12:113,273,245
INFO 2026-06-08 08:34:04 MarkDuplicates Tracking 371491 as yet unmatched pairs. 8229 records in RAM.
INFO 2026-06-08 08:34:06 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr12:120,153,877
INFO 2026-06-08 08:34:06 MarkDuplicates Tracking 370346 as yet unmatched pairs. 7067 records in RAM.
INFO 2026-06-08 08:34:07 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr12:121,405,504
INFO 2026-06-08 08:34:07 MarkDuplicates Tracking 368929 as yet unmatched pairs. 5636 records in RAM.
INFO 2026-06-08 08:34:09 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr12:122,981,844
INFO 2026-06-08 08:34:09 MarkDuplicates Tracking 369123 as yet unmatched pairs. 5825 records in RAM.
INFO 2026-06-08 08:34:11 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr12:124,372,235
INFO 2026-06-08 08:34:11 MarkDuplicates Tracking 367682 as yet unmatched pairs. 4382 records in RAM.
INFO 2026-06-08 08:34:12 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr12:131,960,867
INFO 2026-06-08 08:34:12 MarkDuplicates Tracking 366106 as yet unmatched pairs. 2799 records in RAM.
INFO 2026-06-08 08:34:14 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr12:132,782,412
INFO 2026-06-08 08:34:14 MarkDuplicates Tracking 364182 as yet unmatched pairs. 866 records in RAM.
INFO 2026-06-08 08:34:16 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr13:20,084,136
INFO 2026-06-08 08:34:16 MarkDuplicates Tracking 363628 as yet unmatched pairs. 8382 records in RAM.
INFO 2026-06-08 08:34:17 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr13:28,138,789
INFO 2026-06-08 08:34:17 MarkDuplicates Tracking 362484 as yet unmatched pairs. 7233 records in RAM.
INFO 2026-06-08 08:34:19 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr13:39,013,549
INFO 2026-06-08 08:34:19 MarkDuplicates Tracking 361567 as yet unmatched pairs. 6287 records in RAM.
INFO 2026-06-08 08:34:21 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr13:45,337,355
INFO 2026-06-08 08:34:21 MarkDuplicates Tracking 362128 as yet unmatched pairs. 6819 records in RAM.
INFO 2026-06-08 08:34:23 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 2s. Last read position: chr13:49,136,334
INFO 2026-06-08 08:34:23 MarkDuplicates Tracking 359527 as yet unmatched pairs. 4204 records in RAM.
INFO 2026-06-08 08:34:25 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr13:77,007,754
INFO 2026-06-08 08:34:25 MarkDuplicates Tracking 358592 as yet unmatched pairs. 3252 records in RAM.
INFO 2026-06-08 08:34:27 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr13:95,164,504
INFO 2026-06-08 08:34:27 MarkDuplicates Tracking 357653 as yet unmatched pairs. 2296 records in RAM.
INFO 2026-06-08 08:34:29 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 2s. Last read position: chr13:108,286,806
INFO 2026-06-08 08:34:29 MarkDuplicates Tracking 356527 as yet unmatched pairs. 1165 records in RAM.
INFO 2026-06-08 08:34:31 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr14:20,368,833
INFO 2026-06-08 08:34:31 MarkDuplicates Tracking 355455 as yet unmatched pairs. 24218 records in RAM.
INFO 2026-06-08 08:34:32 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr14:22,589,044
INFO 2026-06-08 08:34:32 MarkDuplicates Tracking 354488 as yet unmatched pairs. 23249 records in RAM.
INFO 2026-06-08 08:34:34 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr14:23,565,644
INFO 2026-06-08 08:34:34 MarkDuplicates Tracking 353786 as yet unmatched pairs. 22545 records in RAM.
INFO 2026-06-08 08:34:36 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr14:24,194,892
INFO 2026-06-08 08:34:36 MarkDuplicates Tracking 352295 as yet unmatched pairs. 21049 records in RAM.
INFO 2026-06-08 08:34:37 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr14:31,141,906
INFO 2026-06-08 08:34:37 MarkDuplicates Tracking 350976 as yet unmatched pairs. 19717 records in RAM.
INFO 2026-06-08 08:34:39 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr14:39,294,028
INFO 2026-06-08 08:34:39 MarkDuplicates Tracking 350422 as yet unmatched pairs. 19157 records in RAM.
INFO 2026-06-08 08:34:41 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,624
INFO 2026-06-08 08:34:41 MarkDuplicates Tracking 378481 as yet unmatched pairs. 47201 records in RAM.
INFO 2026-06-08 08:34:42 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,706
INFO 2026-06-08 08:34:42 MarkDuplicates Tracking 372461 as yet unmatched pairs. 41177 records in RAM.
INFO 2026-06-08 08:34:43 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr14:49,853,676
INFO 2026-06-08 08:34:43 MarkDuplicates Tracking 351256 as yet unmatched pairs. 19957 records in RAM.
INFO 2026-06-08 08:34:44 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,603
INFO 2026-06-08 08:34:44 MarkDuplicates Tracking 373211 as yet unmatched pairs. 41900 records in RAM.
INFO 2026-06-08 08:34:46 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,686
INFO 2026-06-08 08:34:46 MarkDuplicates Tracking 388893 as yet unmatched pairs. 57572 records in RAM.
INFO 2026-06-08 08:34:47 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr14:53,144,882
INFO 2026-06-08 08:34:47 MarkDuplicates Tracking 346528 as yet unmatched pairs. 15197 records in RAM.
INFO 2026-06-08 08:34:49 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr14:60,149,449
INFO 2026-06-08 08:34:49 MarkDuplicates Tracking 344476 as yet unmatched pairs. 13138 records in RAM.
INFO 2026-06-08 08:34:51 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr14:64,175,056
INFO 2026-06-08 08:34:51 MarkDuplicates Tracking 344253 as yet unmatched pairs. 12915 records in RAM.
INFO 2026-06-08 08:34:53 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr14:67,953,146
INFO 2026-06-08 08:34:53 MarkDuplicates Tracking 342665 as yet unmatched pairs. 11310 records in RAM.
INFO 2026-06-08 08:34:55 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr14:71,330,578
INFO 2026-06-08 08:34:55 MarkDuplicates Tracking 341899 as yet unmatched pairs. 10527 records in RAM.
INFO 2026-06-08 08:34:57 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 2s. Last read position: chr14:73,739,681
INFO 2026-06-08 08:34:57 MarkDuplicates Tracking 342084 as yet unmatched pairs. 10696 records in RAM.
INFO 2026-06-08 08:34:58 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr14:77,357,901
INFO 2026-06-08 08:34:58 MarkDuplicates Tracking 339596 as yet unmatched pairs. 8172 records in RAM.
INFO 2026-06-08 08:35:00 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr14:91,342,461
INFO 2026-06-08 08:35:00 MarkDuplicates Tracking 339121 as yet unmatched pairs. 7680 records in RAM.
INFO 2026-06-08 08:35:01 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr14:95,710,229
INFO 2026-06-08 08:35:01 MarkDuplicates Tracking 340090 as yet unmatched pairs. 8647 records in RAM.
INFO 2026-06-08 08:35:03 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr14:101,861,624
INFO 2026-06-08 08:35:03 MarkDuplicates Tracking 336893 as yet unmatched pairs. 5393 records in RAM.
INFO 2026-06-08 08:35:05 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr14:103,535,500
INFO 2026-06-08 08:35:05 MarkDuplicates Tracking 335634 as yet unmatched pairs. 4125 records in RAM.
INFO 2026-06-08 08:35:06 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr14:105,625,875
INFO 2026-06-08 08:35:06 MarkDuplicates Tracking 334361 as yet unmatched pairs. 2845 records in RAM.
INFO 2026-06-08 08:35:08 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr14:105,770,122
INFO 2026-06-08 08:35:08 MarkDuplicates Tracking 334340 as yet unmatched pairs. 2814 records in RAM.
INFO 2026-06-08 08:35:09 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr14:105,907,462
INFO 2026-06-08 08:35:09 MarkDuplicates Tracking 333005 as yet unmatched pairs. 1453 records in RAM.
INFO 2026-06-08 08:35:11 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr14:106,538,066
INFO 2026-06-08 08:35:11 MarkDuplicates Tracking 332067 as yet unmatched pairs. 507 records in RAM.
INFO 2026-06-08 08:35:13 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr15:30,765,462
INFO 2026-06-08 08:35:13 MarkDuplicates Tracking 330769 as yet unmatched pairs. 17883 records in RAM.
INFO 2026-06-08 08:35:14 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr15:34,886,534
INFO 2026-06-08 08:35:14 MarkDuplicates Tracking 330021 as yet unmatched pairs. 17134 records in RAM.
INFO 2026-06-08 08:35:16 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 2s. Last read position: chr15:41,069,652
INFO 2026-06-08 08:35:16 MarkDuplicates Tracking 328799 as yet unmatched pairs. 15902 records in RAM.
INFO 2026-06-08 08:35:18 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr15:42,639,675
INFO 2026-06-08 08:35:18 MarkDuplicates Tracking 327995 as yet unmatched pairs. 15065 records in RAM.
INFO 2026-06-08 08:35:20 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 2s. Last read position: chr15:44,289,160
INFO 2026-06-08 08:35:20 MarkDuplicates Tracking 327386 as yet unmatched pairs. 14437 records in RAM.
INFO 2026-06-08 08:35:22 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr15:50,477,412
INFO 2026-06-08 08:35:22 MarkDuplicates Tracking 326139 as yet unmatched pairs. 13176 records in RAM.
INFO 2026-06-08 08:35:24 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr15:56,184,020
INFO 2026-06-08 08:35:24 MarkDuplicates Tracking 325437 as yet unmatched pairs. 12472 records in RAM.
INFO 2026-06-08 08:35:25 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr15:59,769,054
INFO 2026-06-08 08:35:25 MarkDuplicates Tracking 324345 as yet unmatched pairs. 11349 records in RAM.
INFO 2026-06-08 08:35:27 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr15:64,160,174
INFO 2026-06-08 08:35:27 MarkDuplicates Tracking 324053 as yet unmatched pairs. 11047 records in RAM.
INFO 2026-06-08 08:35:29 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr15:66,333,751
INFO 2026-06-08 08:35:29 MarkDuplicates Tracking 322454 as yet unmatched pairs. 9447 records in RAM.
INFO 2026-06-08 08:35:30 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr15:71,164,863
INFO 2026-06-08 08:35:30 MarkDuplicates Tracking 321460 as yet unmatched pairs. 8448 records in RAM.
INFO 2026-06-08 08:35:32 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr15:74,033,385
INFO 2026-06-08 08:35:32 MarkDuplicates Tracking 325127 as yet unmatched pairs. 12112 records in RAM.
INFO 2026-06-08 08:35:33 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr15:74,923,739
INFO 2026-06-08 08:35:33 MarkDuplicates Tracking 320228 as yet unmatched pairs. 7208 records in RAM.
INFO 2026-06-08 08:35:35 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr15:75,843,684
INFO 2026-06-08 08:35:35 MarkDuplicates Tracking 318303 as yet unmatched pairs. 5279 records in RAM.
INFO 2026-06-08 08:35:37 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr15:80,076,682
INFO 2026-06-08 08:35:37 MarkDuplicates Tracking 317079 as yet unmatched pairs. 4055 records in RAM.
INFO 2026-06-08 08:35:38 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr15:85,579,905
INFO 2026-06-08 08:35:38 MarkDuplicates Tracking 316010 as yet unmatched pairs. 2968 records in RAM.
INFO 2026-06-08 08:35:40 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 2s. Last read position: chr15:90,426,248
INFO 2026-06-08 08:35:40 MarkDuplicates Tracking 314790 as yet unmatched pairs. 1747 records in RAM.
INFO 2026-06-08 08:35:43 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 2s. Last read position: chr15:100,959,635
INFO 2026-06-08 08:35:43 MarkDuplicates Tracking 314387 as yet unmatched pairs. 1327 records in RAM.
INFO 2026-06-08 08:35:45 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 2s. Last read position: chr16:399,404
INFO 2026-06-08 08:35:45 MarkDuplicates Tracking 313011 as yet unmatched pairs. 40135 records in RAM.
INFO 2026-06-08 08:35:47 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr16:864,209
INFO 2026-06-08 08:35:47 MarkDuplicates Tracking 310578 as yet unmatched pairs. 37692 records in RAM.
INFO 2026-06-08 08:35:49 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr16:1,964,283
INFO 2026-06-08 08:35:49 MarkDuplicates Tracking 309824 as yet unmatched pairs. 36929 records in RAM.
INFO 2026-06-08 08:35:50 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr16:2,234,749
INFO 2026-06-08 08:35:50 MarkDuplicates Tracking 307608 as yet unmatched pairs. 34713 records in RAM.
INFO 2026-06-08 08:35:52 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr16:2,765,409
INFO 2026-06-08 08:35:52 MarkDuplicates Tracking 307045 as yet unmatched pairs. 34146 records in RAM.
INFO 2026-06-08 08:35:54 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr16:3,563,566
INFO 2026-06-08 08:35:54 MarkDuplicates Tracking 305053 as yet unmatched pairs. 32149 records in RAM.
INFO 2026-06-08 08:35:56 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr16:4,683,225
INFO 2026-06-08 08:35:56 MarkDuplicates Tracking 304330 as yet unmatched pairs. 31411 records in RAM.
INFO 2026-06-08 08:35:57 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr16:10,944,748
INFO 2026-06-08 08:35:57 MarkDuplicates Tracking 302604 as yet unmatched pairs. 29683 records in RAM.
INFO 2026-06-08 08:35:59 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr16:12,397,054
INFO 2026-06-08 08:35:59 MarkDuplicates Tracking 301645 as yet unmatched pairs. 28714 records in RAM.
INFO 2026-06-08 08:36:01 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr16:15,061,674
INFO 2026-06-08 08:36:01 MarkDuplicates Tracking 300794 as yet unmatched pairs. 27863 records in RAM.
INFO 2026-06-08 08:36:02 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr16:16,325,340
INFO 2026-06-08 08:36:02 MarkDuplicates Tracking 300150 as yet unmatched pairs. 27219 records in RAM.
INFO 2026-06-08 08:36:03 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr16:18,417,390
INFO 2026-06-08 08:36:03 MarkDuplicates Tracking 299456 as yet unmatched pairs. 26525 records in RAM.
INFO 2026-06-08 08:36:05 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr16:21,402,478
INFO 2026-06-08 08:36:05 MarkDuplicates Tracking 298859 as yet unmatched pairs. 25925 records in RAM.
INFO 2026-06-08 08:36:06 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr16:21,437,188
INFO 2026-06-08 08:36:06 MarkDuplicates Tracking 298626 as yet unmatched pairs. 25692 records in RAM.
INFO 2026-06-08 08:36:07 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr16:21,837,515
INFO 2026-06-08 08:36:07 MarkDuplicates Tracking 299684 as yet unmatched pairs. 26750 records in RAM.
INFO 2026-06-08 08:36:09 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr16:22,459,422
INFO 2026-06-08 08:36:09 MarkDuplicates Tracking 298615 as yet unmatched pairs. 25671 records in RAM.
INFO 2026-06-08 08:36:10 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,117
INFO 2026-06-08 08:36:10 MarkDuplicates Tracking 298315 as yet unmatched pairs. 25371 records in RAM.
INFO 2026-06-08 08:36:11 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr16:24,219,941
INFO 2026-06-08 08:36:11 MarkDuplicates Tracking 297062 as yet unmatched pairs. 24118 records in RAM.
INFO 2026-06-08 08:36:13 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr16:28,383,185
INFO 2026-06-08 08:36:13 MarkDuplicates Tracking 296784 as yet unmatched pairs. 23835 records in RAM.
INFO 2026-06-08 08:36:14 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr16:28,901,647
INFO 2026-06-08 08:36:14 MarkDuplicates Tracking 294997 as yet unmatched pairs. 22031 records in RAM.
INFO 2026-06-08 08:36:16 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr16:29,449,520
INFO 2026-06-08 08:36:16 MarkDuplicates Tracking 295846 as yet unmatched pairs. 22872 records in RAM.
INFO 2026-06-08 08:36:17 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr16:29,539,739
INFO 2026-06-08 08:36:17 MarkDuplicates Tracking 294127 as yet unmatched pairs. 21153 records in RAM.
INFO 2026-06-08 08:36:18 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr16:30,001,021
INFO 2026-06-08 08:36:18 MarkDuplicates Tracking 293046 as yet unmatched pairs. 20069 records in RAM.
INFO 2026-06-08 08:36:20 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr16:30,225,506
INFO 2026-06-08 08:36:20 MarkDuplicates Tracking 291943 as yet unmatched pairs. 18963 records in RAM.
INFO 2026-06-08 08:36:21 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr16:30,504,174
INFO 2026-06-08 08:36:21 MarkDuplicates Tracking 291480 as yet unmatched pairs. 18498 records in RAM.
INFO 2026-06-08 08:36:23 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr16:30,783,412
INFO 2026-06-08 08:36:23 MarkDuplicates Tracking 289838 as yet unmatched pairs. 16852 records in RAM.
INFO 2026-06-08 08:36:25 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr16:31,191,403
INFO 2026-06-08 08:36:25 MarkDuplicates Tracking 290412 as yet unmatched pairs. 17419 records in RAM.
INFO 2026-06-08 08:36:26 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr16:50,673,448
INFO 2026-06-08 08:36:26 MarkDuplicates Tracking 288118 as yet unmatched pairs. 15093 records in RAM.
INFO 2026-06-08 08:36:28 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr16:57,025,793
INFO 2026-06-08 08:36:28 MarkDuplicates Tracking 287360 as yet unmatched pairs. 14331 records in RAM.
INFO 2026-06-08 08:36:30 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr16:58,555,373
INFO 2026-06-08 08:36:30 MarkDuplicates Tracking 285828 as yet unmatched pairs. 12794 records in RAM.
INFO 2026-06-08 08:36:31 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr16:67,559,664
INFO 2026-06-08 08:36:31 MarkDuplicates Tracking 284158 as yet unmatched pairs. 11121 records in RAM.
INFO 2026-06-08 08:36:33 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr16:68,304,213
INFO 2026-06-08 08:36:33 MarkDuplicates Tracking 283113 as yet unmatched pairs. 10075 records in RAM.
INFO 2026-06-08 08:36:34 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr16:70,251,067
INFO 2026-06-08 08:36:34 MarkDuplicates Tracking 282642 as yet unmatched pairs. 9596 records in RAM.
INFO 2026-06-08 08:36:36 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr16:71,923,300
INFO 2026-06-08 08:36:36 MarkDuplicates Tracking 281111 as yet unmatched pairs. 8056 records in RAM.
INFO 2026-06-08 08:36:37 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr16:77,788,753
INFO 2026-06-08 08:36:37 MarkDuplicates Tracking 279719 as yet unmatched pairs. 6660 records in RAM.
INFO 2026-06-08 08:36:39 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr16:84,657,464
INFO 2026-06-08 08:36:39 MarkDuplicates Tracking 278978 as yet unmatched pairs. 5913 records in RAM.
INFO 2026-06-08 08:36:41 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 2s. Last read position: chr16:87,851,837
INFO 2026-06-08 08:36:41 MarkDuplicates Tracking 278430 as yet unmatched pairs. 5350 records in RAM.
INFO 2026-06-08 08:36:43 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr16:88,733,955
INFO 2026-06-08 08:36:43 MarkDuplicates Tracking 276594 as yet unmatched pairs. 3506 records in RAM.
INFO 2026-06-08 08:36:45 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr16:89,524,101
INFO 2026-06-08 08:36:45 MarkDuplicates Tracking 275239 as yet unmatched pairs. 2134 records in RAM.
INFO 2026-06-08 08:36:47 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 2s. Last read position: chr16:90,218,506
INFO 2026-06-08 08:36:47 MarkDuplicates Tracking 273108 as yet unmatched pairs. 0 records in RAM.
INFO 2026-06-08 08:36:49 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 2s. Last read position: chr17:1,653,546
INFO 2026-06-08 08:36:49 MarkDuplicates Tracking 272183 as yet unmatched pairs. 43824 records in RAM.
INFO 2026-06-08 08:36:51 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr17:2,696,742
INFO 2026-06-08 08:36:51 MarkDuplicates Tracking 271318 as yet unmatched pairs. 42958 records in RAM.
INFO 2026-06-08 08:36:52 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr17:4,673,092
INFO 2026-06-08 08:36:52 MarkDuplicates Tracking 269762 as yet unmatched pairs. 41402 records in RAM.
INFO 2026-06-08 08:36:54 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr17:5,409,239
INFO 2026-06-08 08:36:54 MarkDuplicates Tracking 268470 as yet unmatched pairs. 40109 records in RAM.
INFO 2026-06-08 08:36:56 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr17:7,311,449
INFO 2026-06-08 08:36:56 MarkDuplicates Tracking 268102 as yet unmatched pairs. 39737 records in RAM.
INFO 2026-06-08 08:36:57 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr17:7,580,010
INFO 2026-06-08 08:36:57 MarkDuplicates Tracking 265913 as yet unmatched pairs. 37548 records in RAM.
INFO 2026-06-08 08:36:59 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr17:8,207,602
INFO 2026-06-08 08:36:59 MarkDuplicates Tracking 264997 as yet unmatched pairs. 36626 records in RAM.
INFO 2026-06-08 08:37:01 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr17:16,073,471
INFO 2026-06-08 08:37:01 MarkDuplicates Tracking 263806 as yet unmatched pairs. 35431 records in RAM.
INFO 2026-06-08 08:37:02 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr17:17,751,634
INFO 2026-06-08 08:37:02 MarkDuplicates Tracking 262668 as yet unmatched pairs. 34289 records in RAM.
INFO 2026-06-08 08:37:04 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr17:18,977,900
INFO 2026-06-08 08:37:04 MarkDuplicates Tracking 261438 as yet unmatched pairs. 33048 records in RAM.
INFO 2026-06-08 08:37:05 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr17:27,642,236
INFO 2026-06-08 08:37:05 MarkDuplicates Tracking 264323 as yet unmatched pairs. 35930 records in RAM.
INFO 2026-06-08 08:37:07 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr17:28,720,237
INFO 2026-06-08 08:37:07 MarkDuplicates Tracking 259757 as yet unmatched pairs. 31362 records in RAM.
INFO 2026-06-08 08:37:09 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr17:29,906,634
INFO 2026-06-08 08:37:09 MarkDuplicates Tracking 258441 as yet unmatched pairs. 30044 records in RAM.
INFO 2026-06-08 08:37:10 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr17:32,360,625
INFO 2026-06-08 08:37:10 MarkDuplicates Tracking 257949 as yet unmatched pairs. 29549 records in RAM.
INFO 2026-06-08 08:37:12 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr17:35,822,640
INFO 2026-06-08 08:37:12 MarkDuplicates Tracking 259413 as yet unmatched pairs. 31003 records in RAM.
INFO 2026-06-08 08:37:13 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr17:37,538,386
INFO 2026-06-08 08:37:13 MarkDuplicates Tracking 256032 as yet unmatched pairs. 27622 records in RAM.
INFO 2026-06-08 08:37:15 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr17:38,716,450
INFO 2026-06-08 08:37:15 MarkDuplicates Tracking 255411 as yet unmatched pairs. 27001 records in RAM.
INFO 2026-06-08 08:37:16 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr17:39,530,765
INFO 2026-06-08 08:37:16 MarkDuplicates Tracking 254409 as yet unmatched pairs. 25999 records in RAM.
INFO 2026-06-08 08:37:18 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 2s. Last read position: chr17:40,406,567
INFO 2026-06-08 08:37:18 MarkDuplicates Tracking 252916 as yet unmatched pairs. 24506 records in RAM.
INFO 2026-06-08 08:37:20 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 2s. Last read position: chr17:42,322,457
INFO 2026-06-08 08:37:20 MarkDuplicates Tracking 251728 as yet unmatched pairs. 23306 records in RAM.
INFO 2026-06-08 08:37:22 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr17:42,990,888
INFO 2026-06-08 08:37:22 MarkDuplicates Tracking 250559 as yet unmatched pairs. 22136 records in RAM.
INFO 2026-06-08 08:37:24 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr17:44,326,831
INFO 2026-06-08 08:37:24 MarkDuplicates Tracking 249249 as yet unmatched pairs. 20826 records in RAM.
INFO 2026-06-08 08:37:26 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 2s. Last read position: chr17:45,468,487
INFO 2026-06-08 08:37:26 MarkDuplicates Tracking 248287 as yet unmatched pairs. 19856 records in RAM.
INFO 2026-06-08 08:37:28 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr17:47,531,442
INFO 2026-06-08 08:37:28 MarkDuplicates Tracking 248308 as yet unmatched pairs. 19875 records in RAM.
INFO 2026-06-08 08:37:29 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr17:48,543,500
INFO 2026-06-08 08:37:29 MarkDuplicates Tracking 246793 as yet unmatched pairs. 18358 records in RAM.
INFO 2026-06-08 08:37:31 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr17:50,990,602
INFO 2026-06-08 08:37:31 MarkDuplicates Tracking 245368 as yet unmatched pairs. 16929 records in RAM.
INFO 2026-06-08 08:37:33 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr17:58,495,769
INFO 2026-06-08 08:37:33 MarkDuplicates Tracking 244359 as yet unmatched pairs. 15919 records in RAM.
INFO 2026-06-08 08:37:35 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr17:59,838,056
INFO 2026-06-08 08:37:35 MarkDuplicates Tracking 243225 as yet unmatched pairs. 14772 records in RAM.
INFO 2026-06-08 08:37:36 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr17:63,808,935
INFO 2026-06-08 08:37:36 MarkDuplicates Tracking 242807 as yet unmatched pairs. 14348 records in RAM.
INFO 2026-06-08 08:37:38 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr17:67,078,230
INFO 2026-06-08 08:37:38 MarkDuplicates Tracking 241198 as yet unmatched pairs. 12737 records in RAM.
INFO 2026-06-08 08:37:39 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr17:72,647,039
INFO 2026-06-08 08:37:39 MarkDuplicates Tracking 240255 as yet unmatched pairs. 11787 records in RAM.
INFO 2026-06-08 08:37:41 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr17:75,489,377
INFO 2026-06-08 08:37:41 MarkDuplicates Tracking 239530 as yet unmatched pairs. 11057 records in RAM.
INFO 2026-06-08 08:37:43 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr17:76,225,896
INFO 2026-06-08 08:37:43 MarkDuplicates Tracking 238113 as yet unmatched pairs. 9640 records in RAM.
INFO 2026-06-08 08:37:44 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr17:78,086,906
INFO 2026-06-08 08:37:44 MarkDuplicates Tracking 236388 as yet unmatched pairs. 7908 records in RAM.
INFO 2026-06-08 08:37:46 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr17:78,223,498
INFO 2026-06-08 08:37:46 MarkDuplicates Tracking 235243 as yet unmatched pairs. 6763 records in RAM.
INFO 2026-06-08 08:37:48 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr17:80,339,775
INFO 2026-06-08 08:37:48 MarkDuplicates Tracking 235388 as yet unmatched pairs. 6907 records in RAM.
INFO 2026-06-08 08:37:49 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr17:81,282,308
INFO 2026-06-08 08:37:49 MarkDuplicates Tracking 233183 as yet unmatched pairs. 4698 records in RAM.
INFO 2026-06-08 08:37:51 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 2s. Last read position: chr17:81,869,524
INFO 2026-06-08 08:37:51 MarkDuplicates Tracking 232420 as yet unmatched pairs. 3925 records in RAM.
INFO 2026-06-08 08:37:53 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr17:82,101,715
INFO 2026-06-08 08:37:53 MarkDuplicates Tracking 230180 as yet unmatched pairs. 1683 records in RAM.
INFO 2026-06-08 08:37:55 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 2s. Last read position: chr18:2,574,982
INFO 2026-06-08 08:37:55 MarkDuplicates Tracking 228397 as yet unmatched pairs. 8666 records in RAM.
INFO 2026-06-08 08:37:57 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr18:12,067,563
INFO 2026-06-08 08:37:57 MarkDuplicates Tracking 227369 as yet unmatched pairs. 7636 records in RAM.
INFO 2026-06-08 08:37:59 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 2s. Last read position: chr18:23,561,374
INFO 2026-06-08 08:37:59 MarkDuplicates Tracking 226464 as yet unmatched pairs. 6725 records in RAM.
INFO 2026-06-08 08:38:01 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr18:44,730,769
INFO 2026-06-08 08:38:01 MarkDuplicates Tracking 225376 as yet unmatched pairs. 5633 records in RAM.
INFO 2026-06-08 08:38:02 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr18:51,067,079
INFO 2026-06-08 08:38:02 MarkDuplicates Tracking 224395 as yet unmatched pairs. 4648 records in RAM.
INFO 2026-06-08 08:38:04 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr18:62,203,033
INFO 2026-06-08 08:38:04 MarkDuplicates Tracking 223210 as yet unmatched pairs. 3463 records in RAM.
INFO 2026-06-08 08:38:05 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: chr18:63,318,444
INFO 2026-06-08 08:38:05 MarkDuplicates Tracking 229447 as yet unmatched pairs. 9697 records in RAM.
INFO 2026-06-08 08:38:07 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr18:79,396,279
INFO 2026-06-08 08:38:07 MarkDuplicates Tracking 220318 as yet unmatched pairs. 560 records in RAM.
INFO 2026-06-08 08:38:09 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 2s. Last read position: chr19:868,158
INFO 2026-06-08 08:38:09 MarkDuplicates Tracking 219124 as yet unmatched pairs. 65580 records in RAM.
INFO 2026-06-08 08:38:11 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr19:1,081,856
INFO 2026-06-08 08:38:11 MarkDuplicates Tracking 217820 as yet unmatched pairs. 64276 records in RAM.
INFO 2026-06-08 08:38:12 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr19:1,408,017
INFO 2026-06-08 08:38:12 MarkDuplicates Tracking 215860 as yet unmatched pairs. 62315 records in RAM.
INFO 2026-06-08 08:40:11 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 119s. Last read position: chr19:1,879,944
INFO 2026-06-08 08:40:11 MarkDuplicates Tracking 214219 as yet unmatched pairs. 60672 records in RAM.
INFO 2026-06-08 08:40:14 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 2s. Last read position: chr19:2,226,556
INFO 2026-06-08 08:40:14 MarkDuplicates Tracking 213576 as yet unmatched pairs. 60028 records in RAM.
INFO 2026-06-08 08:40:15 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr19:3,053,895
INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 213272 as yet unmatched pairs. 59722 records in RAM.
INFO 2026-06-08 08:40:17 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr19:4,090,453
INFO 2026-06-08 08:40:17 MarkDuplicates Tracking 209586 as yet unmatched pairs. 56030 records in RAM.
INFO 2026-06-08 08:40:19 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 1s. Last read position: chr19:4,910,849
INFO 2026-06-08 08:40:19 MarkDuplicates Tracking 208365 as yet unmatched pairs. 54803 records in RAM.
INFO 2026-06-08 08:40:21 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr19:5,931,791
INFO 2026-06-08 08:40:21 MarkDuplicates Tracking 206514 as yet unmatched pairs. 52950 records in RAM.
INFO 2026-06-08 08:40:22 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 1s. Last read position: chr19:6,828,639
INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 204794 as yet unmatched pairs. 51230 records in RAM.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr19:7,963,667
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 203394 as yet unmatched pairs. 49825 records in RAM.
INFO 2026-06-08 08:40:26 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr19:10,113,762
INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 202626 as yet unmatched pairs. 49054 records in RAM.
INFO 2026-06-08 08:40:28 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 2s. Last read position: chr19:10,365,595
INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 201416 as yet unmatched pairs. 47842 records in RAM.
INFO 2026-06-08 08:40:29 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr19:10,984,167
INFO 2026-06-08 08:40:29 MarkDuplicates Tracking 199735 as yet unmatched pairs. 46160 records in RAM.
INFO 2026-06-08 08:40:31 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr19:12,628,526
INFO 2026-06-08 08:40:31 MarkDuplicates Tracking 198316 as yet unmatched pairs. 44739 records in RAM.
INFO 2026-06-08 08:40:33 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chr19:12,952,848
INFO 2026-06-08 08:40:33 MarkDuplicates Tracking 197108 as yet unmatched pairs. 43530 records in RAM.
INFO 2026-06-08 08:40:35 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 2s. Last read position: chr19:14,159,403
INFO 2026-06-08 08:40:35 MarkDuplicates Tracking 195435 as yet unmatched pairs. 41850 records in RAM.
INFO 2026-06-08 08:40:36 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr19:15,243,404
INFO 2026-06-08 08:40:36 MarkDuplicates Tracking 194564 as yet unmatched pairs. 40978 records in RAM.
INFO 2026-06-08 08:40:38 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 2s. Last read position: chr19:15,460,203
INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 192834 as yet unmatched pairs. 39248 records in RAM.
INFO 2026-06-08 08:40:41 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 2s. Last read position: chr19:17,194,669
INFO 2026-06-08 08:40:41 MarkDuplicates Tracking 191809 as yet unmatched pairs. 38218 records in RAM.
INFO 2026-06-08 08:40:43 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 2s. Last read position: chr19:17,844,233
INFO 2026-06-08 08:40:43 MarkDuplicates Tracking 190835 as yet unmatched pairs. 37240 records in RAM.
INFO 2026-06-08 08:40:45 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr19:18,461,615
INFO 2026-06-08 08:40:45 MarkDuplicates Tracking 188596 as yet unmatched pairs. 34999 records in RAM.
INFO 2026-06-08 08:40:46 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chr19:19,145,872
INFO 2026-06-08 08:40:46 MarkDuplicates Tracking 187303 as yet unmatched pairs. 33706 records in RAM.
INFO 2026-06-08 08:40:48 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr19:19,712,742
INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 185275 as yet unmatched pairs. 31677 records in RAM.
INFO 2026-06-08 08:40:50 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr19:34,396,384
INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 184806 as yet unmatched pairs. 31197 records in RAM.
INFO 2026-06-08 08:40:51 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr19:35,631,384
INFO 2026-06-08 08:40:51 MarkDuplicates Tracking 182602 as yet unmatched pairs. 28992 records in RAM.
INFO 2026-06-08 08:40:53 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr19:36,472,918
INFO 2026-06-08 08:40:53 MarkDuplicates Tracking 180896 as yet unmatched pairs. 27283 records in RAM.
INFO 2026-06-08 08:40:54 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr19:38,624,175
INFO 2026-06-08 08:40:54 MarkDuplicates Tracking 180711 as yet unmatched pairs. 27088 records in RAM.
INFO 2026-06-08 08:40:56 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr19:39,408,464
INFO 2026-06-08 08:40:56 MarkDuplicates Tracking 179200 as yet unmatched pairs. 25576 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr19:40,236,346
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 178719 as yet unmatched pairs. 25093 records in RAM.
INFO 2026-06-08 08:40:59 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr19:41,302,853
INFO 2026-06-08 08:40:59 MarkDuplicates Tracking 177004 as yet unmatched pairs. 23378 records in RAM.
INFO 2026-06-08 08:41:00 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr19:42,022,286
INFO 2026-06-08 08:41:00 MarkDuplicates Tracking 174811 as yet unmatched pairs. 21185 records in RAM.
INFO 2026-06-08 08:41:02 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr19:42,272,155
INFO 2026-06-08 08:41:02 MarkDuplicates Tracking 176701 as yet unmatched pairs. 23075 records in RAM.
INFO 2026-06-08 08:41:04 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr19:42,293,703
INFO 2026-06-08 08:41:04 MarkDuplicates Tracking 174146 as yet unmatched pairs. 20520 records in RAM.
INFO 2026-06-08 08:41:05 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr19:44,986,542
INFO 2026-06-08 08:41:05 MarkDuplicates Tracking 170875 as yet unmatched pairs. 17230 records in RAM.
INFO 2026-06-08 08:41:07 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 2s. Last read position: chr19:45,698,562
INFO 2026-06-08 08:41:07 MarkDuplicates Tracking 169369 as yet unmatched pairs. 15719 records in RAM.
INFO 2026-06-08 08:41:09 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr19:46,701,056
INFO 2026-06-08 08:41:09 MarkDuplicates Tracking 168054 as yet unmatched pairs. 14402 records in RAM.
INFO 2026-06-08 08:41:11 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 2s. Last read position: chr19:47,493,470
INFO 2026-06-08 08:41:11 MarkDuplicates Tracking 166543 as yet unmatched pairs. 12887 records in RAM.
INFO 2026-06-08 08:41:14 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 2s. Last read position: chr19:48,635,641
INFO 2026-06-08 08:41:14 MarkDuplicates Tracking 165048 as yet unmatched pairs. 11378 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 2s. Last read position: chr19:49,468,497
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 164492 as yet unmatched pairs. 10813 records in RAM.
INFO 2026-06-08 08:41:18 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr19:49,663,385
INFO 2026-06-08 08:41:18 MarkDuplicates Tracking 162762 as yet unmatched pairs. 9082 records in RAM.
INFO 2026-06-08 08:41:19 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr19:49,929,350
INFO 2026-06-08 08:41:19 MarkDuplicates Tracking 161221 as yet unmatched pairs. 7536 records in RAM.
INFO 2026-06-08 08:41:21 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr19:52,061,194
INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 159333 as yet unmatched pairs. 5647 records in RAM.
INFO 2026-06-08 08:41:22 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:54,453,555
INFO 2026-06-08 08:41:22 MarkDuplicates Tracking 158877 as yet unmatched pairs. 5184 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr19:55,387,960
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 161814 as yet unmatched pairs. 8102 records in RAM.
INFO 2026-06-08 08:41:26 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 2s. Last read position: chr19:56,310,324
INFO 2026-06-08 08:41:26 MarkDuplicates Tracking 155182 as yet unmatched pairs. 1467 records in RAM.
INFO 2026-06-08 08:41:28 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr19:58,405,831
INFO 2026-06-08 08:41:28 MarkDuplicates Tracking 154288 as yet unmatched pairs. 572 records in RAM.
INFO 2026-06-08 08:41:29 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr20:2,461,718
INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 153544 as yet unmatched pairs. 17173 records in RAM.
INFO 2026-06-08 08:41:31 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr20:5,127,067
INFO 2026-06-08 08:41:31 MarkDuplicates Tracking 151563 as yet unmatched pairs. 15192 records in RAM.
INFO 2026-06-08 08:41:33 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr20:18,548,759
INFO 2026-06-08 08:41:33 MarkDuplicates Tracking 150507 as yet unmatched pairs. 14135 records in RAM.
INFO 2026-06-08 08:41:35 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 2s. Last read position: chr20:32,303,303
INFO 2026-06-08 08:41:35 MarkDuplicates Tracking 149374 as yet unmatched pairs. 12997 records in RAM.
INFO 2026-06-08 08:41:38 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 2s. Last read position: chr20:35,078,165
INFO 2026-06-08 08:41:38 MarkDuplicates Tracking 148991 as yet unmatched pairs. 12614 records in RAM.
INFO 2026-06-08 08:41:39 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr20:36,612,106
INFO 2026-06-08 08:41:39 MarkDuplicates Tracking 147474 as yet unmatched pairs. 11096 records in RAM.
INFO 2026-06-08 08:41:41 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr20:41,168,833
INFO 2026-06-08 08:41:41 MarkDuplicates Tracking 146055 as yet unmatched pairs. 9675 records in RAM.
INFO 2026-06-08 08:41:42 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr20:45,792,004
INFO 2026-06-08 08:41:42 MarkDuplicates Tracking 144886 as yet unmatched pairs. 8504 records in RAM.
INFO 2026-06-08 08:41:44 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr20:47,660,693
INFO 2026-06-08 08:41:44 MarkDuplicates Tracking 143901 as yet unmatched pairs. 7517 records in RAM.
INFO 2026-06-08 08:41:46 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr20:50,574,330
INFO 2026-06-08 08:41:46 MarkDuplicates Tracking 142885 as yet unmatched pairs. 6498 records in RAM.
INFO 2026-06-08 08:41:47 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr20:58,691,723
INFO 2026-06-08 08:41:47 MarkDuplicates Tracking 141693 as yet unmatched pairs. 5301 records in RAM.
INFO 2026-06-08 08:41:49 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr20:62,314,936
INFO 2026-06-08 08:41:49 MarkDuplicates Tracking 140318 as yet unmatched pairs. 3919 records in RAM.
INFO 2026-06-08 08:41:51 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr20:63,521,831
INFO 2026-06-08 08:41:51 MarkDuplicates Tracking 139018 as yet unmatched pairs. 2615 records in RAM.
INFO 2026-06-08 08:41:52 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr20:63,930,916
INFO 2026-06-08 08:41:52 MarkDuplicates Tracking 137226 as yet unmatched pairs. 821 records in RAM.
INFO 2026-06-08 08:41:54 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr21:5,141,256
INFO 2026-06-08 08:41:54 MarkDuplicates Tracking 136228 as yet unmatched pairs. 41145 records in RAM.
INFO 2026-06-08 08:41:55 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr21:8,210,349
INFO 2026-06-08 08:41:55 MarkDuplicates Tracking 134801 as yet unmatched pairs. 39718 records in RAM.
INFO 2026-06-08 08:41:56 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 0s. Last read position: chr21:8,213,379
INFO 2026-06-08 08:41:56 MarkDuplicates Tracking 134958 as yet unmatched pairs. 39875 records in RAM.
INFO 2026-06-08 08:41:57 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr21:8,215,008
INFO 2026-06-08 08:41:57 MarkDuplicates Tracking 133224 as yet unmatched pairs. 38141 records in RAM.
INFO 2026-06-08 08:41:59 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,810
INFO 2026-06-08 08:41:59 MarkDuplicates Tracking 130969 as yet unmatched pairs. 35848 records in RAM.
INFO 2026-06-08 08:42:00 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,882
INFO 2026-06-08 08:42:00 MarkDuplicates Tracking 133559 as yet unmatched pairs. 38434 records in RAM.
INFO 2026-06-08 08:42:01 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr21:8,217,299
INFO 2026-06-08 08:42:01 MarkDuplicates Tracking 129221 as yet unmatched pairs. 34092 records in RAM.
INFO 2026-06-08 08:42:02 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr21:8,218,672
INFO 2026-06-08 08:42:02 MarkDuplicates Tracking 124660 as yet unmatched pairs. 29531 records in RAM.
INFO 2026-06-08 08:42:04 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr21:8,256,225
INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 123769 as yet unmatched pairs. 28639 records in RAM.
INFO 2026-06-08 08:42:05 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,758
INFO 2026-06-08 08:42:05 MarkDuplicates Tracking 123255 as yet unmatched pairs. 28125 records in RAM.
INFO 2026-06-08 08:42:07 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr21:8,260,274
INFO 2026-06-08 08:42:07 MarkDuplicates Tracking 122422 as yet unmatched pairs. 27292 records in RAM.
INFO 2026-06-08 08:42:08 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 0s. Last read position: chr21:8,393,955
INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 122259 as yet unmatched pairs. 27125 records in RAM.
INFO 2026-06-08 08:42:09 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr21:8,396,841
INFO 2026-06-08 08:42:09 MarkDuplicates Tracking 120605 as yet unmatched pairs. 25470 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,082
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 120784 as yet unmatched pairs. 25649 records in RAM.
INFO 2026-06-08 08:42:12 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,882
INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 122170 as yet unmatched pairs. 27033 records in RAM.
INFO 2026-06-08 08:42:13 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,138
INFO 2026-06-08 08:42:13 MarkDuplicates Tracking 113887 as yet unmatched pairs. 18749 records in RAM.
INFO 2026-06-08 08:42:15 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr21:8,401,683
INFO 2026-06-08 08:42:15 MarkDuplicates Tracking 112355 as yet unmatched pairs. 17212 records in RAM.
INFO 2026-06-08 08:42:16 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr21:8,439,072
INFO 2026-06-08 08:42:16 MarkDuplicates Tracking 111485 as yet unmatched pairs. 16342 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr21:8,440,836
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 110964 as yet unmatched pairs. 15821 records in RAM.
INFO 2026-06-08 08:42:18 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr21:8,442,041
INFO 2026-06-08 08:42:18 MarkDuplicates Tracking 110560 as yet unmatched pairs. 15417 records in RAM.
INFO 2026-06-08 08:42:19 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,070
INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 107756 as yet unmatched pairs. 12612 records in RAM.
INFO 2026-06-08 08:42:20 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 0s. Last read position: chr21:8,444,192
INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 107750 as yet unmatched pairs. 12606 records in RAM.
INFO 2026-06-08 08:42:21 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,554
INFO 2026-06-08 08:42:21 MarkDuplicates Tracking 138592 as yet unmatched pairs. 43447 records in RAM.
INFO 2026-06-08 08:42:23 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr21:8,445,915
INFO 2026-06-08 08:42:23 MarkDuplicates Tracking 104043 as yet unmatched pairs. 8897 records in RAM.
INFO 2026-06-08 08:42:25 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr21:29,024,679
INFO 2026-06-08 08:42:25 MarkDuplicates Tracking 100719 as yet unmatched pairs. 5573 records in RAM.
INFO 2026-06-08 08:42:27 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr21:33,552,812
INFO 2026-06-08 08:42:27 MarkDuplicates Tracking 100616 as yet unmatched pairs. 5469 records in RAM.
INFO 2026-06-08 08:42:28 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr21:39,391,805
INFO 2026-06-08 08:42:28 MarkDuplicates Tracking 98733 as yet unmatched pairs. 3571 records in RAM.
INFO 2026-06-08 08:42:30 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr21:43,741,255
INFO 2026-06-08 08:42:30 MarkDuplicates Tracking 97940 as yet unmatched pairs. 2777 records in RAM.
INFO 2026-06-08 08:42:31 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr21:44,326,182
INFO 2026-06-08 08:42:31 MarkDuplicates Tracking 97831 as yet unmatched pairs. 2668 records in RAM.
INFO 2026-06-08 08:42:33 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr21:46,509,351
INFO 2026-06-08 08:42:33 MarkDuplicates Tracking 95567 as yet unmatched pairs. 404 records in RAM.
INFO 2026-06-08 08:42:34 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr22:20,113,426
INFO 2026-06-08 08:42:34 MarkDuplicates Tracking 94407 as yet unmatched pairs. 20178 records in RAM.
INFO 2026-06-08 08:42:36 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr22:22,288,764
INFO 2026-06-08 08:42:36 MarkDuplicates Tracking 92740 as yet unmatched pairs. 18511 records in RAM.
INFO 2026-06-08 08:42:38 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr22:24,050,957
INFO 2026-06-08 08:42:38 MarkDuplicates Tracking 91874 as yet unmatched pairs. 17642 records in RAM.
INFO 2026-06-08 08:42:39 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr22:28,800,298
INFO 2026-06-08 08:42:39 MarkDuplicates Tracking 93947 as yet unmatched pairs. 19713 records in RAM.
INFO 2026-06-08 08:42:41 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,638
INFO 2026-06-08 08:42:41 MarkDuplicates Tracking 91586 as yet unmatched pairs. 17352 records in RAM.
INFO 2026-06-08 08:42:43 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 2s. Last read position: chr22:31,463,852
INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 88304 as yet unmatched pairs. 14070 records in RAM.
INFO 2026-06-08 08:42:45 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr22:36,285,743
INFO 2026-06-08 08:42:45 MarkDuplicates Tracking 87784 as yet unmatched pairs. 13549 records in RAM.
INFO 2026-06-08 08:42:47 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr22:37,127,771
INFO 2026-06-08 08:42:47 MarkDuplicates Tracking 86889 as yet unmatched pairs. 12654 records in RAM.
INFO 2026-06-08 08:42:49 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 2s. Last read position: chr22:37,888,477
INFO 2026-06-08 08:42:49 MarkDuplicates Tracking 84705 as yet unmatched pairs. 10470 records in RAM.
INFO 2026-06-08 08:42:50 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr22:38,908,851
INFO 2026-06-08 08:42:50 MarkDuplicates Tracking 83213 as yet unmatched pairs. 8978 records in RAM.
INFO 2026-06-08 08:42:52 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr22:40,404,344
INFO 2026-06-08 08:42:52 MarkDuplicates Tracking 82432 as yet unmatched pairs. 8190 records in RAM.
INFO 2026-06-08 08:42:54 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr22:41,636,522
INFO 2026-06-08 08:42:54 MarkDuplicates Tracking 81370 as yet unmatched pairs. 7128 records in RAM.
INFO 2026-06-08 08:42:56 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr22:42,148,590
INFO 2026-06-08 08:42:56 MarkDuplicates Tracking 80029 as yet unmatched pairs. 5787 records in RAM.
INFO 2026-06-08 08:42:57 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr22:45,718,447
INFO 2026-06-08 08:42:57 MarkDuplicates Tracking 79146 as yet unmatched pairs. 4895 records in RAM.
INFO 2026-06-08 08:42:59 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr22:50,226,058
INFO 2026-06-08 08:42:59 MarkDuplicates Tracking 77842 as yet unmatched pairs. 3591 records in RAM.
INFO 2026-06-08 08:43:01 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr22:50,463,409
INFO 2026-06-08 08:43:01 MarkDuplicates Tracking 76316 as yet unmatched pairs. 2065 records in RAM.
INFO 2026-06-08 08:43:03 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 2s. Last read position: chrX:314,199
INFO 2026-06-08 08:43:03 MarkDuplicates Tracking 74366 as yet unmatched pairs. 17337 records in RAM.
INFO 2026-06-08 08:43:05 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chrX:9,654,258
INFO 2026-06-08 08:43:05 MarkDuplicates Tracking 72990 as yet unmatched pairs. 15961 records in RAM.
INFO 2026-06-08 08:43:06 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chrX:19,631,925
INFO 2026-06-08 08:43:06 MarkDuplicates Tracking 72402 as yet unmatched pairs. 15340 records in RAM.
INFO 2026-06-08 08:43:08 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chrX:40,057,297
INFO 2026-06-08 08:43:08 MarkDuplicates Tracking 71380 as yet unmatched pairs. 14313 records in RAM.
INFO 2026-06-08 08:43:09 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chrX:46,547,566
INFO 2026-06-08 08:43:09 MarkDuplicates Tracking 70075 as yet unmatched pairs. 13008 records in RAM.
INFO 2026-06-08 08:43:11 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chrX:48,600,366
INFO 2026-06-08 08:43:11 MarkDuplicates Tracking 69793 as yet unmatched pairs. 12726 records in RAM.
INFO 2026-06-08 08:43:12 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chrX:51,844,448
INFO 2026-06-08 08:43:12 MarkDuplicates Tracking 67686 as yet unmatched pairs. 10619 records in RAM.
INFO 2026-06-08 08:43:14 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chrX:53,593,463
INFO 2026-06-08 08:43:14 MarkDuplicates Tracking 67863 as yet unmatched pairs. 10796 records in RAM.
INFO 2026-06-08 08:43:16 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chrX:65,731,936
INFO 2026-06-08 08:43:16 MarkDuplicates Tracking 65997 as yet unmatched pairs. 8929 records in RAM.
INFO 2026-06-08 08:43:17 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chrX:71,545,245
INFO 2026-06-08 08:43:17 MarkDuplicates Tracking 64945 as yet unmatched pairs. 7874 records in RAM.
INFO 2026-06-08 08:43:19 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chrX:77,663,473
INFO 2026-06-08 08:43:19 MarkDuplicates Tracking 64727 as yet unmatched pairs. 7656 records in RAM.
INFO 2026-06-08 08:43:21 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chrX:101,246,240
INFO 2026-06-08 08:43:21 MarkDuplicates Tracking 63182 as yet unmatched pairs. 6111 records in RAM.
INFO 2026-06-08 08:43:22 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chrX:119,574,707
INFO 2026-06-08 08:43:22 MarkDuplicates Tracking 63351 as yet unmatched pairs. 6280 records in RAM.
INFO 2026-06-08 08:43:24 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chrX:130,163,366
INFO 2026-06-08 08:43:24 MarkDuplicates Tracking 61518 as yet unmatched pairs. 4446 records in RAM.
INFO 2026-06-08 08:43:26 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chrX:150,987,247
INFO 2026-06-08 08:43:26 MarkDuplicates Tracking 60525 as yet unmatched pairs. 3449 records in RAM.
INFO 2026-06-08 08:43:28 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 2s. Last read position: chrX:154,019,710
INFO 2026-06-08 08:43:28 MarkDuplicates Tracking 59453 as yet unmatched pairs. 2377 records in RAM.
INFO 2026-06-08 08:43:30 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chrX:154,467,976
INFO 2026-06-08 08:43:30 MarkDuplicates Tracking 57857 as yet unmatched pairs. 780 records in RAM.
INFO 2026-06-08 08:43:31 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chrY:13,264,960
INFO 2026-06-08 08:43:31 MarkDuplicates Tracking 56985 as yet unmatched pairs. 604 records in RAM.
INFO 2026-06-08 08:43:33 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 2s. Last read position: chrM:12,563
INFO 2026-06-08 08:43:33 MarkDuplicates Tracking 56131 as yet unmatched pairs. 121 records in RAM.
INFO 2026-06-08 08:43:35 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: GL000220.1:111,203
INFO 2026-06-08 08:43:35 MarkDuplicates Tracking 55336 as yet unmatched pairs. 7742 records in RAM.
INFO 2026-06-08 08:43:36 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: GL000220.1:112,968
INFO 2026-06-08 08:43:36 MarkDuplicates Tracking 54089 as yet unmatched pairs. 6495 records in RAM.
INFO 2026-06-08 08:43:37 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,201
INFO 2026-06-08 08:43:37 MarkDuplicates Tracking 54037 as yet unmatched pairs. 6443 records in RAM.
INFO 2026-06-08 08:43:38 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,264
INFO 2026-06-08 08:43:38 MarkDuplicates Tracking 48122 as yet unmatched pairs. 527 records in RAM.
INFO 2026-06-08 08:43:39 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,366
INFO 2026-06-08 08:43:39 MarkDuplicates Tracking 48148 as yet unmatched pairs. 553 records in RAM.
INFO 2026-06-08 08:43:40 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,765
INFO 2026-06-08 08:43:40 MarkDuplicates Tracking 48252 as yet unmatched pairs. 657 records in RAM.
INFO 2026-06-08 08:43:41 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 0s. Last read position: GL000220.1:151,741
INFO 2026-06-08 08:43:41 MarkDuplicates Tracking 48194 as yet unmatched pairs. 599 records in RAM.
INFO 2026-06-08 08:43:42 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 0s. Last read position: GL000220.1:156,580
INFO 2026-06-08 08:43:42 MarkDuplicates Tracking 48159 as yet unmatched pairs. 564 records in RAM.
INFO 2026-06-08 08:43:43 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 0s. Last read position: GL000220.1:158,083
INFO 2026-06-08 08:43:43 MarkDuplicates Tracking 48113 as yet unmatched pairs. 518 records in RAM.
INFO 2026-06-08 08:43:44 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: GL000220.1:159,457
INFO 2026-06-08 08:43:44 MarkDuplicates Tracking 47981 as yet unmatched pairs. 386 records in RAM.
INFO 2026-06-08 08:43:45 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 0s. Last read position: GL000220.1:160,291
INFO 2026-06-08 08:43:45 MarkDuplicates Tracking 47721 as yet unmatched pairs. 126 records in RAM.
INFO 2026-06-08 08:43:46 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: GL000220.1:160,570
INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 47644 as yet unmatched pairs. 49 records in RAM.
INFO 2026-06-08 08:43:47 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 0s. Last read position: KI270721.1:8,031
INFO 2026-06-08 08:43:47 MarkDuplicates Tracking 47714 as yet unmatched pairs. 132 records in RAM.
INFO 2026-06-08 08:43:49 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: KI270733.1:128,168
INFO 2026-06-08 08:43:49 MarkDuplicates Tracking 47227 as yet unmatched pairs. 47218 records in RAM.
INFO 2026-06-08 08:43:50 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: KI270733.1:129,622
INFO 2026-06-08 08:43:50 MarkDuplicates Tracking 46894 as yet unmatched pairs. 46885 records in RAM.
INFO 2026-06-08 08:43:51 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: KI270733.1:129,947
INFO 2026-06-08 08:43:51 MarkDuplicates Tracking 48347 as yet unmatched pairs. 48338 records in RAM.
INFO 2026-06-08 08:43:52 MarkDuplicates Read 641,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,292
INFO 2026-06-08 08:43:52 MarkDuplicates Tracking 40406 as yet unmatched pairs. 40397 records in RAM.
INFO 2026-06-08 08:43:54 MarkDuplicates Read 642,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,167
INFO 2026-06-08 08:43:54 MarkDuplicates Tracking 36153 as yet unmatched pairs. 36144 records in RAM.
INFO 2026-06-08 08:43:55 MarkDuplicates Read 643,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,256
INFO 2026-06-08 08:43:55 MarkDuplicates Tracking 35563 as yet unmatched pairs. 35554 records in RAM.
INFO 2026-06-08 08:43:58 MarkDuplicates Read 644,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 2s. Last read position: KI270733.1:133,667
INFO 2026-06-08 08:43:58 MarkDuplicates Tracking 32185 as yet unmatched pairs. 32176 records in RAM.
INFO 2026-06-08 08:43:59 MarkDuplicates Read 645,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: KI270733.1:170,474
INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 31370 as yet unmatched pairs. 31361 records in RAM.
INFO 2026-06-08 08:44:00 MarkDuplicates Read 646,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: KI270733.1:173,537
INFO 2026-06-08 08:44:00 MarkDuplicates Tracking 27597 as yet unmatched pairs. 27588 records in RAM.
INFO 2026-06-08 08:44:02 MarkDuplicates Read 647,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: KI270733.1:174,717
INFO 2026-06-08 08:44:02 MarkDuplicates Tracking 16934 as yet unmatched pairs. 16925 records in RAM.
INFO 2026-06-08 08:44:04 MarkDuplicates Read 648,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: KI270733.1:175,204
INFO 2026-06-08 08:44:04 MarkDuplicates Tracking 432 as yet unmatched pairs. 423 records in RAM.
INFO 2026-06-08 08:44:05 MarkDuplicates Read 649,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,409
INFO 2026-06-08 08:44:05 MarkDuplicates Tracking 364 as yet unmatched pairs. 355 records in RAM.
INFO 2026-06-08 08:44:06 MarkDuplicates Read 650,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,248
INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 151 as yet unmatched pairs. 142 records in RAM.
INFO 2026-06-08 08:44:08 MarkDuplicates Read 651,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,421
INFO 2026-06-08 08:44:08 MarkDuplicates Tracking 74 as yet unmatched pairs. 65 records in RAM.
INFO 2026-06-08 08:44:09 MarkDuplicates Read 652,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,797
INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 16 as yet unmatched pairs. 7 records in RAM.
INFO 2026-06-08 08:44:09 MarkDuplicates Read 652170772 records. 0 pairs never matched.
INFO 2026-06-08 08:44:48 MarkDuplicates After buildSortedReadEndLists freeMemory: 204137960; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:44:48 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:44:52 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:44:52 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:45:01 OpticalDuplicateFinder Large duplicate set. size = 1599
INFO 2026-06-08 08:45:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,871
INFO 2026-06-08 08:45:01 OpticalDuplicateFinder Large duplicate set. size = 1883
INFO 2026-06-08 08:45:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,232
INFO 2026-06-08 08:45:01 OpticalDuplicateFinder Large duplicate set. size = 2564
INFO 2026-06-08 08:45:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,593
INFO 2026-06-08 08:45:01 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,726
INFO 2026-06-08 08:45:01 OpticalDuplicateFinder Large duplicate set. size = 1720
INFO 2026-06-08 08:45:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,899
INFO 2026-06-08 08:45:14 OpticalDuplicateFinder Large duplicate set. size = 1546
INFO 2026-06-08 08:45:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,936
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder Large duplicate set. size = 1309
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,446
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder Large duplicate set. size = 1680
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,048
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder Large duplicate set. size = 1411
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,476
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder Large duplicate set. size = 1347
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,768
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder Large duplicate set. size = 1074
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,637
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder Large duplicate set. size = 1201
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,342
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder Large duplicate set. size = 1251
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,483
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder Large duplicate set. size = 1677
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,596
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder Large duplicate set. size = 1400
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,212
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder Large duplicate set. size = 1292
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,618
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder Large duplicate set. size = 1011
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,992
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder Large duplicate set. size = 1011
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,618
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder Large duplicate set. size = 1316
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,080
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder Large duplicate set. size = 1813
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,520
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder Large duplicate set. size = 1454
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,225
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder Large duplicate set. size = 1282
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,677
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder Large duplicate set. size = 1035
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,454
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder Large duplicate set. size = 1052
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,400
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder Large duplicate set. size = 1438
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,718
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder Large duplicate set. size = 1199
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,964
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder Large duplicate set. size = 1561
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,411
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder Large duplicate set. size = 2032
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,645
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,377
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder Large duplicate set. size = 1799
INFO 2026-06-08 08:45:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,121
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder Large duplicate set. size = 1067
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,005
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder Large duplicate set. size = 1602
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,870
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder Large duplicate set. size = 2230
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,091
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,749
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder Large duplicate set. size = 1747
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,891
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder Large duplicate set. size = 1687
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,840
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder Large duplicate set. size = 2122
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,169
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,683
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder Large duplicate set. size = 1738
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,140
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder Large duplicate set. size = 1164
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,757
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder Large duplicate set. size = 1064
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,700
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder Large duplicate set. size = 1618
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,884
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder Large duplicate set. size = 1179
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,217
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder Large duplicate set. size = 1066
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,749
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder Large duplicate set. size = 1029
INFO 2026-06-08 08:45:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,308
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 1092
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,091
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 1009
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,453
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 2296
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,899
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,949
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 1094
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,267
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 1023
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,879
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 1207
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,974
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 3349
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,710
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,969
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,696
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 1029
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,299
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 1091
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,007
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 1708
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,403
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 1567
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,070
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 2552
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,320
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,308
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 3520
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,720
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,724
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,612
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 2968
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,935
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,033
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 1066
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,331
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 1026
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,763
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 1831
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,677
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 1494
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,483
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 1933
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,702
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 1697
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,785
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 1073
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,626
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 1087
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,281
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 1043
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,064
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 1243
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,144
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 1166
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,151
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 1251
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,302
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 1279
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,174
INFO 2026-06-08 08:45:45 OpticalDuplicateFinder Large duplicate set. size = 1180
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,810
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder Large duplicate set. size = 1253
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,399
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder Large duplicate set. size = 1385
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,492
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder Large duplicate set. size = 1896
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,603
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder Large duplicate set. size = 1121
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,969
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder Large duplicate set. size = 1335
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,928
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder Large duplicate set. size = 1181
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,338
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder Large duplicate set. size = 1024
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,988
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder Large duplicate set. size = 1521
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,143
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder Large duplicate set. size = 1659
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,688
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder Large duplicate set. size = 1118
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,169
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder Large duplicate set. size = 1150
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,104
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder Large duplicate set. size = 2231
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,935
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,700
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder Large duplicate set. size = 1340
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,309
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder Large duplicate set. size = 1078
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,893
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder Large duplicate set. size = 1315
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,475
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder Large duplicate set. size = 1609
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,400
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder Large duplicate set. size = 1019
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,613
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder Large duplicate set. size = 1115
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,011
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder Large duplicate set. size = 1063
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,372
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder Large duplicate set. size = 2384
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,121
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,657
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder Large duplicate set. size = 1588
INFO 2026-06-08 08:45:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,358
INFO 2026-06-08 08:46:27 OpticalDuplicateFinder Large duplicate set. size = 1028
INFO 2026-06-08 08:46:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,751
INFO 2026-06-08 08:46:27 OpticalDuplicateFinder Large duplicate set. size = 1106
INFO 2026-06-08 08:46:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,677
INFO 2026-06-08 08:46:27 OpticalDuplicateFinder Large duplicate set. size = 1048
INFO 2026-06-08 08:46:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,333
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder Large duplicate set. size = 1033
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,324
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder Large duplicate set. size = 1121
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,738
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder Large duplicate set. size = 1292
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,231
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder Large duplicate set. size = 1256
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,860
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder Large duplicate set. size = 1255
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,814
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder Large duplicate set. size = 1114
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,885
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder Large duplicate set. size = 1337
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,911
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder Large duplicate set. size = 1302
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,060
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder Large duplicate set. size = 1543
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,289
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder Large duplicate set. size = 1014
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,707
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder Large duplicate set. size = 1524
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,887
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder Large duplicate set. size = 1347
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,650
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder Large duplicate set. size = 1547
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,257
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder Large duplicate set. size = 1285
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,725
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder Large duplicate set. size = 3574
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,809
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,747
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,044
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder Large duplicate set. size = 1091
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,868
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder Large duplicate set. size = 1954
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,436
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder Large duplicate set. size = 1360
INFO 2026-06-08 08:46:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,504
INFO 2026-06-08 08:46:34 OpticalDuplicateFinder Large duplicate set. size = 1197
INFO 2026-06-08 08:46:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,116
INFO 2026-06-08 08:46:34 OpticalDuplicateFinder Large duplicate set. size = 1009
INFO 2026-06-08 08:46:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,355
INFO 2026-06-08 08:46:34 OpticalDuplicateFinder Large duplicate set. size = 1130
INFO 2026-06-08 08:46:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,238
INFO 2026-06-08 08:46:34 OpticalDuplicateFinder Large duplicate set. size = 2569
INFO 2026-06-08 08:46:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,780
INFO 2026-06-08 08:46:34 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,889
INFO 2026-06-08 08:46:34 OpticalDuplicateFinder Large duplicate set. size = 1478
INFO 2026-06-08 08:46:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,742
INFO 2026-06-08 08:46:34 OpticalDuplicateFinder Large duplicate set. size = 1254
INFO 2026-06-08 08:46:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,640
INFO 2026-06-08 08:46:35 OpticalDuplicateFinder Large duplicate set. size = 1147
INFO 2026-06-08 08:46:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,588
INFO 2026-06-08 08:46:35 OpticalDuplicateFinder Large duplicate set. size = 1447
INFO 2026-06-08 08:46:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,780
INFO 2026-06-08 08:46:35 OpticalDuplicateFinder Large duplicate set. size = 1973
INFO 2026-06-08 08:46:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,593
INFO 2026-06-08 08:46:35 OpticalDuplicateFinder Large duplicate set. size = 2382
INFO 2026-06-08 08:46:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,689
INFO 2026-06-08 08:46:35 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,265
INFO 2026-06-08 08:46:35 OpticalDuplicateFinder Large duplicate set. size = 1405
INFO 2026-06-08 08:46:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,979
INFO 2026-06-08 08:46:35 OpticalDuplicateFinder Large duplicate set. size = 1042
INFO 2026-06-08 08:46:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,479
INFO 2026-06-08 08:46:35 OpticalDuplicateFinder Large duplicate set. size = 1170
INFO 2026-06-08 08:46:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,813
INFO 2026-06-08 08:46:35 OpticalDuplicateFinder Large duplicate set. size = 1156
INFO 2026-06-08 08:46:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,743
INFO 2026-06-08 08:46:35 OpticalDuplicateFinder Large duplicate set. size = 1433
INFO 2026-06-08 08:46:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,494
INFO 2026-06-08 08:46:35 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:46:35 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:47:39 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:47:44 MarkDuplicates After generateDuplicateIndexes freeMemory: 203888536; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:47:44 MarkDuplicates Marking 362964800 records as duplicates.
INFO 2026-06-08 08:47:44 MarkDuplicates Found 24941212 optical duplicate clusters.
INFO 2026-06-08 08:47:44 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:48:01 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:25,245,199
INFO 2026-06-08 08:48:17 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:33s. Time for last 10,000,000: 16s. Last read position: chr1:47,373,556
INFO 2026-06-08 08:48:34 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:49s. Time for last 10,000,000: 16s. Last read position: chr1:146,984,134
INFO 2026-06-08 08:48:50 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:05s. Time for last 10,000,000: 16s. Last read position: chr1:160,619,839
INFO 2026-06-08 08:49:07 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:22s. Time for last 10,000,000: 16s. Last read position: chr1:220,151,319
INFO 2026-06-08 08:49:23 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:38s. Time for last 10,000,000: 16s. Last read position: chr2:32,916,254
INFO 2026-06-08 08:49:39 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:54s. Time for last 10,000,000: 15s. Last read position: chr2:74,165,261
INFO 2026-06-08 08:49:55 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:10s. Time for last 10,000,000: 16s. Last read position: chr2:159,748,103
INFO 2026-06-08 08:50:12 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:27s. Time for last 10,000,000: 16s. Last read position: chr2:230,444,255
INFO 2026-06-08 08:50:28 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:43s. Time for last 10,000,000: 16s. Last read position: chr3:39,410,760
INFO 2026-06-08 08:50:44 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:59s. Time for last 10,000,000: 16s. Last read position: chr3:101,585,439
INFO 2026-06-08 08:51:00 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:16s. Time for last 10,000,000: 16s. Last read position: chr3:184,174,922
INFO 2026-06-08 08:51:17 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:32s. Time for last 10,000,000: 16s. Last read position: chr4:56,345,281
INFO 2026-06-08 08:51:33 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:48s. Time for last 10,000,000: 16s. Last read position: chr5:1,344,723
INFO 2026-06-08 08:51:50 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:05s. Time for last 10,000,000: 16s. Last read position: chr5:109,378,917
INFO 2026-06-08 08:52:06 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:21s. Time for last 10,000,000: 16s. Last read position: chr5:154,399,463
INFO 2026-06-08 08:52:22 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:37s. Time for last 10,000,000: 16s. Last read position: chr6:15,251,872
INFO 2026-06-08 08:52:38 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:53s. Time for last 10,000,000: 15s. Last read position: chr6:33,069,864
INFO 2026-06-08 08:52:54 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:09s. Time for last 10,000,000: 16s. Last read position: chr6:87,257,173
INFO 2026-06-08 08:53:10 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:26s. Time for last 10,000,000: 16s. Last read position: chr7:1,010,039
INFO 2026-06-08 08:53:27 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:42s. Time for last 10,000,000: 16s. Last read position: chr7:65,873,376
INFO 2026-06-08 08:53:43 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:58s. Time for last 10,000,000: 16s. Last read position: chr7:102,540,041
INFO 2026-06-08 08:53:59 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:14s. Time for last 10,000,000: 16s. Last read position: chr7:155,711,439
INFO 2026-06-08 08:54:16 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:31s. Time for last 10,000,000: 16s. Last read position: chr8:80,099,814
INFO 2026-06-08 08:54:32 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:47s. Time for last 10,000,000: 16s. Last read position: chr9:396,862
INFO 2026-06-08 08:54:48 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:03s. Time for last 10,000,000: 16s. Last read position: chr9:92,229,013
INFO 2026-06-08 08:55:05 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:20s. Time for last 10,000,000: 16s. Last read position: chr9:132,327,332
INFO 2026-06-08 08:55:21 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:36s. Time for last 10,000,000: 16s. Last read position: chr10:48,709,716
INFO 2026-06-08 08:55:38 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:53s. Time for last 10,000,000: 16s. Last read position: chr10:102,395,888
INFO 2026-06-08 08:55:54 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:09s. Time for last 10,000,000: 16s. Last read position: chr11:22,236,247
INFO 2026-06-08 08:56:10 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:25s. Time for last 10,000,000: 16s. Last read position: chr11:65,128,437
INFO 2026-06-08 08:56:27 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:42s. Time for last 10,000,000: 16s. Last read position: chr11:85,971,782
INFO 2026-06-08 08:56:44 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:59s. Time for last 10,000,000: 16s. Last read position: chr12:9,695,311
INFO 2026-06-08 08:57:00 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:16s. Time for last 10,000,000: 16s. Last read position: chr12:55,789,115
INFO 2026-06-08 08:57:17 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:32s. Time for last 10,000,000: 16s. Last read position: chr12:108,641,590
INFO 2026-06-08 08:57:33 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:49s. Time for last 10,000,000: 16s. Last read position: chr13:20,084,136
INFO 2026-06-08 08:57:50 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:05s. Time for last 10,000,000: 16s. Last read position: chr14:23,565,644
INFO 2026-06-08 08:58:06 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:21s. Time for last 10,000,000: 15s. Last read position: chr14:60,149,449
INFO 2026-06-08 08:58:22 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:37s. Time for last 10,000,000: 16s. Last read position: chr14:105,625,875
INFO 2026-06-08 08:58:39 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:54s. Time for last 10,000,000: 16s. Last read position: chr15:56,184,020
INFO 2026-06-08 08:58:55 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:10s. Time for last 10,000,000: 16s. Last read position: chr15:90,426,248
INFO 2026-06-08 08:59:11 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:26s. Time for last 10,000,000: 16s. Last read position: chr16:12,397,054
INFO 2026-06-08 08:59:28 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:43s. Time for last 10,000,000: 16s. Last read position: chr16:28,383,185
INFO 2026-06-08 08:59:44 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:59s. Time for last 10,000,000: 16s. Last read position: chr16:57,025,793
INFO 2026-06-08 09:00:01 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:16s. Time for last 10,000,000: 16s. Last read position: chr16:89,524,101
INFO 2026-06-08 09:00:17 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:32s. Time for last 10,000,000: 16s. Last read position: chr17:17,751,634
INFO 2026-06-08 09:00:34 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:49s. Time for last 10,000,000: 16s. Last read position: chr17:40,406,567
INFO 2026-06-08 09:00:50 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:05s. Time for last 10,000,000: 16s. Last read position: chr17:63,808,935
INFO 2026-06-08 09:01:06 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:21s. Time for last 10,000,000: 16s. Last read position: chr17:82,101,715
INFO 2026-06-08 09:01:22 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:37s. Time for last 10,000,000: 16s. Last read position: chr19:1,081,856
INFO 2026-06-08 09:01:38 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:53s. Time for last 10,000,000: 15s. Last read position: chr19:10,113,762
INFO 2026-06-08 09:01:54 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:09s. Time for last 10,000,000: 16s. Last read position: chr19:18,461,615
INFO 2026-06-08 09:02:10 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:26s. Time for last 10,000,000: 16s. Last read position: chr19:42,022,286
INFO 2026-06-08 09:02:26 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:41s. Time for last 10,000,000: 15s. Last read position: chr19:49,929,350
INFO 2026-06-08 09:02:42 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:57s. Time for last 10,000,000: 15s. Last read position: chr20:35,078,165
INFO 2026-06-08 09:02:58 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:13s. Time for last 10,000,000: 16s. Last read position: chr21:5,141,256
INFO 2026-06-08 09:03:12 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:27s. Time for last 10,000,000: 14s. Last read position: chr21:8,260,274
INFO 2026-06-08 09:03:26 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:41s. Time for last 10,000,000: 14s. Last read position: chr21:8,444,070
INFO 2026-06-08 09:03:42 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:57s. Time for last 10,000,000: 15s. Last read position: chr22:20,113,426
INFO 2026-06-08 09:03:58 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:13s. Time for last 10,000,000: 16s. Last read position: chr22:40,404,344
INFO 2026-06-08 09:04:14 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:29s. Time for last 10,000,000: 15s. Last read position: chrX:46,547,566
INFO 2026-06-08 09:04:30 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:16:45s. Time for last 10,000,000: 16s. Last read position: chrX:150,987,247
INFO 2026-06-08 09:04:47 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:17:02s. Time for last 10,000,000: 16s. Last read position: GL000220.1:116,765
INFO 2026-06-08 09:05:01 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:17:16s. Time for last 10,000,000: 14s. Last read position: KI270733.1:129,947
INFO 2026-06-08 09:05:15 MarkDuplicates Written 650,000,000 records. Elapsed time: 00:17:31s. Time for last 10,000,000: 14s. Last read position: KI270733.1:178,248
INFO 2026-06-08 09:05:31 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:05:31 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:05:31 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:05:31 MarkDuplicates Before output close freeMemory: 203839256; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:05:31 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:05:31 MarkDuplicates After output close freeMemory: 104089520; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:05:31 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 42.85 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory