File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/f419cc14b8b5af7cc42d7b4a43a530/.command.err
Size
219.4 KB
Attempt
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
    java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT GM24385_0001_RNA_0001_23H5VFLT4_s08.Aligned.sortedByCoord.out.bam --OUTPUT GM24385_0001_RNA_0001_23H5VFLT4_s08.md.bam --METRICS_FILE GM24385_0001_RNA_0001_23H5VFLT4_s08.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:22:41.176 INFO  NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:22:41 GMT 2026] MarkDuplicates --INPUT GM24385_0001_RNA_0001_23H5VFLT4_s08.Aligned.sortedByCoord.out.bam --OUTPUT GM24385_0001_RNA_0001_23H5VFLT4_s08.md.bam --METRICS_FILE GM24385_0001_RNA_0001_23H5VFLT4_s08.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:22:41 GMT 2026] Executing as ?@nf-62f419cc14b8b5af7cc42d7b4a43a530-0744e-sdnv4 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO	2026-06-08 08:22:41	MarkDuplicates	Start of doWork freeMemory: 105828928; totalMemory: 134217728; maxMemory: 63585648640
INFO	2026-06-08 08:22:41	MarkDuplicates	Reading input file and constructing read end information.
INFO	2026-06-08 08:22:41	MarkDuplicates	Will retain up to 230382784 data points before spilling to disk.
INFO	2026-06-08 08:22:44	MarkDuplicates	Read     1,000,000 records.  Elapsed time: 00:00:02s.  Time for last 1,000,000:    2s.  Last read position: chr1:1,211,706
INFO	2026-06-08 08:22:44	MarkDuplicates	Tracking 1697 as yet unmatched pairs. 381 records in RAM.
INFO	2026-06-08 08:22:46	MarkDuplicates	Read     2,000,000 records.  Elapsed time: 00:00:04s.  Time for last 1,000,000:    2s.  Last read position: chr1:1,703,181
INFO	2026-06-08 08:22:46	MarkDuplicates	Tracking 3245 as yet unmatched pairs. 326 records in RAM.
INFO	2026-06-08 08:22:48	MarkDuplicates	Read     3,000,000 records.  Elapsed time: 00:00:06s.  Time for last 1,000,000:    1s.  Last read position: chr1:6,096,675
INFO	2026-06-08 08:22:48	MarkDuplicates	Tracking 5346 as yet unmatched pairs. 1081 records in RAM.
INFO	2026-06-08 08:22:50	MarkDuplicates	Read     4,000,000 records.  Elapsed time: 00:00:08s.  Time for last 1,000,000:    1s.  Last read position: chr1:8,868,041
INFO	2026-06-08 08:22:50	MarkDuplicates	Tracking 6026 as yet unmatched pairs. 542 records in RAM.
INFO	2026-06-08 08:22:52	MarkDuplicates	Read     5,000,000 records.  Elapsed time: 00:00:10s.  Time for last 1,000,000:    2s.  Last read position: chr1:11,247,904
INFO	2026-06-08 08:22:52	MarkDuplicates	Tracking 6868 as yet unmatched pairs. 145 records in RAM.
INFO	2026-06-08 08:22:54	MarkDuplicates	Read     6,000,000 records.  Elapsed time: 00:00:12s.  Time for last 1,000,000:    1s.  Last read position: chr1:15,548,309
INFO	2026-06-08 08:22:54	MarkDuplicates	Tracking 8210 as yet unmatched pairs. 68 records in RAM.
INFO	2026-06-08 08:22:56	MarkDuplicates	Read     7,000,000 records.  Elapsed time: 00:00:14s.  Time for last 1,000,000:    2s.  Last read position: chr1:16,740,529
INFO	2026-06-08 08:22:56	MarkDuplicates	Tracking 9059 as yet unmatched pairs. 6 records in RAM.
INFO	2026-06-08 08:22:58	MarkDuplicates	Read     8,000,000 records.  Elapsed time: 00:00:15s.  Time for last 1,000,000:    1s.  Last read position: chr1:19,339,450
INFO	2026-06-08 08:22:58	MarkDuplicates	Tracking 10467 as yet unmatched pairs. 407 records in RAM.
INFO	2026-06-08 08:23:00	MarkDuplicates	Read     9,000,000 records.  Elapsed time: 00:00:17s.  Time for last 1,000,000:    1s.  Last read position: chr1:23,055,944
INFO	2026-06-08 08:23:00	MarkDuplicates	Tracking 11278 as yet unmatched pairs. 237 records in RAM.
INFO	2026-06-08 08:23:01	MarkDuplicates	Read    10,000,000 records.  Elapsed time: 00:00:19s.  Time for last 1,000,000:    1s.  Last read position: chr1:25,245,199
INFO	2026-06-08 08:23:01	MarkDuplicates	Tracking 12487 as yet unmatched pairs. 385 records in RAM.
INFO	2026-06-08 08:23:03	MarkDuplicates	Read    11,000,000 records.  Elapsed time: 00:00:20s.  Time for last 1,000,000:    1s.  Last read position: chr1:26,848,624
INFO	2026-06-08 08:23:03	MarkDuplicates	Tracking 13542 as yet unmatched pairs. 235 records in RAM.
INFO	2026-06-08 08:23:05	MarkDuplicates	Read    12,000,000 records.  Elapsed time: 00:00:23s.  Time for last 1,000,000:    2s.  Last read position: chr1:28,236,260
INFO	2026-06-08 08:23:05	MarkDuplicates	Tracking 15281 as yet unmatched pairs. 772 records in RAM.
INFO	2026-06-08 08:23:07	MarkDuplicates	Read    13,000,000 records.  Elapsed time: 00:00:25s.  Time for last 1,000,000:    2s.  Last read position: chr1:31,585,199
INFO	2026-06-08 08:23:07	MarkDuplicates	Tracking 15610 as yet unmatched pairs. 46 records in RAM.
INFO	2026-06-08 08:23:09	MarkDuplicates	Read    14,000,000 records.  Elapsed time: 00:00:26s.  Time for last 1,000,000:    1s.  Last read position: chr1:32,797,768
INFO	2026-06-08 08:23:09	MarkDuplicates	Tracking 17078 as yet unmatched pairs. 346 records in RAM.
INFO	2026-06-08 08:23:11	MarkDuplicates	Read    15,000,000 records.  Elapsed time: 00:00:29s.  Time for last 1,000,000:    2s.  Last read position: chr1:35,751,382
INFO	2026-06-08 08:23:11	MarkDuplicates	Tracking 18166 as yet unmatched pairs. 28 records in RAM.
INFO	2026-06-08 08:23:13	MarkDuplicates	Read    16,000,000 records.  Elapsed time: 00:00:31s.  Time for last 1,000,000:    2s.  Last read position: chr1:39,231,234
INFO	2026-06-08 08:23:13	MarkDuplicates	Tracking 19795 as yet unmatched pairs. 462 records in RAM.
INFO	2026-06-08 08:23:16	MarkDuplicates	Read    17,000,000 records.  Elapsed time: 00:00:33s.  Time for last 1,000,000:    2s.  Last read position: chr1:40,303,529
INFO	2026-06-08 08:23:16	MarkDuplicates	Tracking 21683 as yet unmatched pairs. 1431 records in RAM.
INFO	2026-06-08 08:23:18	MarkDuplicates	Read    18,000,000 records.  Elapsed time: 00:00:35s.  Time for last 1,000,000:    2s.  Last read position: chr1:43,359,775
INFO	2026-06-08 08:23:18	MarkDuplicates	Tracking 21533 as yet unmatched pairs. 147 records in RAM.
INFO	2026-06-08 08:23:20	MarkDuplicates	Read    19,000,000 records.  Elapsed time: 00:00:37s.  Time for last 1,000,000:    1s.  Last read position: chr1:44,978,441
INFO	2026-06-08 08:23:20	MarkDuplicates	Tracking 22735 as yet unmatched pairs. 282 records in RAM.
INFO	2026-06-08 08:23:21	MarkDuplicates	Read    20,000,000 records.  Elapsed time: 00:00:39s.  Time for last 1,000,000:    1s.  Last read position: chr1:47,373,556
INFO	2026-06-08 08:23:21	MarkDuplicates	Tracking 23709 as yet unmatched pairs. 119 records in RAM.
INFO	2026-06-08 08:23:23	MarkDuplicates	Read    21,000,000 records.  Elapsed time: 00:00:40s.  Time for last 1,000,000:    1s.  Last read position: chr1:53,270,889
INFO	2026-06-08 08:23:23	MarkDuplicates	Tracking 24685 as yet unmatched pairs. 86 records in RAM.
INFO	2026-06-08 08:23:25	MarkDuplicates	Read    22,000,000 records.  Elapsed time: 00:00:43s.  Time for last 1,000,000:    2s.  Last read position: chr1:66,959,715
INFO	2026-06-08 08:23:25	MarkDuplicates	Tracking 25701 as yet unmatched pairs. 210 records in RAM.
INFO	2026-06-08 08:23:27	MarkDuplicates	Read    23,000,000 records.  Elapsed time: 00:00:45s.  Time for last 1,000,000:    2s.  Last read position: chr1:78,641,429
INFO	2026-06-08 08:23:27	MarkDuplicates	Tracking 27754 as yet unmatched pairs. 1485 records in RAM.
INFO	2026-06-08 08:23:30	MarkDuplicates	Read    24,000,000 records.  Elapsed time: 00:00:47s.  Time for last 1,000,000:    2s.  Last read position: chr1:89,843,759
INFO	2026-06-08 08:23:30	MarkDuplicates	Tracking 27515 as yet unmatched pairs. 434 records in RAM.
INFO	2026-06-08 08:23:31	MarkDuplicates	Read    25,000,000 records.  Elapsed time: 00:00:49s.  Time for last 1,000,000:    1s.  Last read position: chr1:100,913,713
INFO	2026-06-08 08:23:31	MarkDuplicates	Tracking 28290 as yet unmatched pairs. 346 records in RAM.
INFO	2026-06-08 08:23:33	MarkDuplicates	Read    26,000,000 records.  Elapsed time: 00:00:50s.  Time for last 1,000,000:    1s.  Last read position: chr1:110,404,013
INFO	2026-06-08 08:23:33	MarkDuplicates	Tracking 29243 as yet unmatched pairs. 248 records in RAM.
INFO	2026-06-08 08:23:35	MarkDuplicates	Read    27,000,000 records.  Elapsed time: 00:00:52s.  Time for last 1,000,000:    1s.  Last read position: chr1:112,703,736
INFO	2026-06-08 08:23:35	MarkDuplicates	Tracking 30104 as yet unmatched pairs. 130 records in RAM.
INFO	2026-06-08 08:23:36	MarkDuplicates	Read    28,000,000 records.  Elapsed time: 00:00:54s.  Time for last 1,000,000:    1s.  Last read position: chr1:116,396,649
INFO	2026-06-08 08:23:36	MarkDuplicates	Tracking 31577 as yet unmatched pairs. 576 records in RAM.
INFO	2026-06-08 08:23:39	MarkDuplicates	Read    29,000,000 records.  Elapsed time: 00:00:56s.  Time for last 1,000,000:    2s.  Last read position: chr1:121,554,454
INFO	2026-06-08 08:23:39	MarkDuplicates	Tracking 31707 as yet unmatched pairs. 15 records in RAM.
INFO	2026-06-08 08:23:41	MarkDuplicates	Read    30,000,000 records.  Elapsed time: 00:00:58s.  Time for last 1,000,000:    1s.  Last read position: chr1:146,984,134
INFO	2026-06-08 08:23:41	MarkDuplicates	Tracking 32412 as yet unmatched pairs. 242 records in RAM.
INFO	2026-06-08 08:23:42	MarkDuplicates	Read    31,000,000 records.  Elapsed time: 00:01:00s.  Time for last 1,000,000:    1s.  Last read position: chr1:149,840,792
INFO	2026-06-08 08:23:42	MarkDuplicates	Tracking 34133 as yet unmatched pairs. 1410 records in RAM.
INFO	2026-06-08 08:23:44	MarkDuplicates	Read    32,000,000 records.  Elapsed time: 00:01:01s.  Time for last 1,000,000:    1s.  Last read position: chr1:150,436,359
INFO	2026-06-08 08:23:44	MarkDuplicates	Tracking 34075 as yet unmatched pairs. 497 records in RAM.
INFO	2026-06-08 08:23:46	MarkDuplicates	Read    33,000,000 records.  Elapsed time: 00:01:03s.  Time for last 1,000,000:    1s.  Last read position: chr1:151,289,453
INFO	2026-06-08 08:23:46	MarkDuplicates	Tracking 34943 as yet unmatched pairs. 229 records in RAM.
INFO	2026-06-08 08:23:47	MarkDuplicates	Read    34,000,000 records.  Elapsed time: 00:01:04s.  Time for last 1,000,000:    1s.  Last read position: chr1:153,936,593
INFO	2026-06-08 08:23:47	MarkDuplicates	Tracking 36428 as yet unmatched pairs. 588 records in RAM.
INFO	2026-06-08 08:23:49	MarkDuplicates	Read    35,000,000 records.  Elapsed time: 00:01:06s.  Time for last 1,000,000:    1s.  Last read position: chr1:154,207,495
INFO	2026-06-08 08:23:49	MarkDuplicates	Tracking 37560 as yet unmatched pairs. 790 records in RAM.
INFO	2026-06-08 08:23:50	MarkDuplicates	Read    36,000,000 records.  Elapsed time: 00:01:08s.  Time for last 1,000,000:    1s.  Last read position: chr1:154,948,291
INFO	2026-06-08 08:23:50	MarkDuplicates	Tracking 38076 as yet unmatched pairs. 279 records in RAM.
INFO	2026-06-08 08:23:52	MarkDuplicates	Read    37,000,000 records.  Elapsed time: 00:01:09s.  Time for last 1,000,000:    1s.  Last read position: chr1:155,610,226
INFO	2026-06-08 08:23:52	MarkDuplicates	Tracking 38911 as yet unmatched pairs. 27 records in RAM.
INFO	2026-06-08 08:23:55	MarkDuplicates	Read    38,000,000 records.  Elapsed time: 00:01:12s.  Time for last 1,000,000:    2s.  Last read position: chr1:156,156,558
INFO	2026-06-08 08:23:55	MarkDuplicates	Tracking 40778 as yet unmatched pairs. 813 records in RAM.
INFO	2026-06-08 08:23:57	MarkDuplicates	Read    39,000,000 records.  Elapsed time: 00:01:14s.  Time for last 1,000,000:    2s.  Last read position: chr1:157,524,402
INFO	2026-06-08 08:23:57	MarkDuplicates	Tracking 42803 as yet unmatched pairs. 1742 records in RAM.
INFO	2026-06-08 08:23:59	MarkDuplicates	Read    40,000,000 records.  Elapsed time: 00:01:17s.  Time for last 1,000,000:    2s.  Last read position: chr1:160,619,839
INFO	2026-06-08 08:23:59	MarkDuplicates	Tracking 42381 as yet unmatched pairs. 593 records in RAM.
INFO	2026-06-08 08:24:01	MarkDuplicates	Read    41,000,000 records.  Elapsed time: 00:01:18s.  Time for last 1,000,000:    1s.  Last read position: chr1:161,210,378
INFO	2026-06-08 08:24:01	MarkDuplicates	Tracking 42933 as yet unmatched pairs. 173 records in RAM.
INFO	2026-06-08 08:24:03	MarkDuplicates	Read    42,000,000 records.  Elapsed time: 00:01:20s.  Time for last 1,000,000:    1s.  Last read position: chr1:168,184,858
INFO	2026-06-08 08:24:03	MarkDuplicates	Tracking 43940 as yet unmatched pairs. 165 records in RAM.
INFO	2026-06-08 08:24:05	MarkDuplicates	Read    43,000,000 records.  Elapsed time: 00:01:22s.  Time for last 1,000,000:    1s.  Last read position: chr1:173,757,038
INFO	2026-06-08 08:24:05	MarkDuplicates	Tracking 44802 as yet unmatched pairs. 114 records in RAM.
INFO	2026-06-08 08:24:06	MarkDuplicates	Read    44,000,000 records.  Elapsed time: 00:01:24s.  Time for last 1,000,000:    1s.  Last read position: chr1:180,094,463
INFO	2026-06-08 08:24:06	MarkDuplicates	Tracking 45635 as yet unmatched pairs. 175 records in RAM.
INFO	2026-06-08 08:24:08	MarkDuplicates	Read    45,000,000 records.  Elapsed time: 00:01:25s.  Time for last 1,000,000:    1s.  Last read position: chr1:184,795,404
INFO	2026-06-08 08:24:08	MarkDuplicates	Tracking 46877 as yet unmatched pairs. 85 records in RAM.
INFO	2026-06-08 08:24:09	MarkDuplicates	Read    46,000,000 records.  Elapsed time: 00:01:27s.  Time for last 1,000,000:    1s.  Last read position: chr1:193,238,714
INFO	2026-06-08 08:24:09	MarkDuplicates	Tracking 47734 as yet unmatched pairs. 167 records in RAM.
INFO	2026-06-08 08:24:11	MarkDuplicates	Read    47,000,000 records.  Elapsed time: 00:01:28s.  Time for last 1,000,000:    1s.  Last read position: chr1:202,348,854
INFO	2026-06-08 08:24:11	MarkDuplicates	Tracking 49048 as yet unmatched pairs. 394 records in RAM.
INFO	2026-06-08 08:24:12	MarkDuplicates	Read    48,000,000 records.  Elapsed time: 00:01:30s.  Time for last 1,000,000:    1s.  Last read position: chr1:205,623,712
INFO	2026-06-08 08:24:12	MarkDuplicates	Tracking 49930 as yet unmatched pairs. 414 records in RAM.
INFO	2026-06-08 08:24:14	MarkDuplicates	Read    49,000,000 records.  Elapsed time: 00:01:32s.  Time for last 1,000,000:    1s.  Last read position: chr1:210,329,502
INFO	2026-06-08 08:24:14	MarkDuplicates	Tracking 50652 as yet unmatched pairs. 65 records in RAM.
INFO	2026-06-08 08:24:16	MarkDuplicates	Read    50,000,000 records.  Elapsed time: 00:01:33s.  Time for last 1,000,000:    1s.  Last read position: chr1:220,151,319
INFO	2026-06-08 08:24:16	MarkDuplicates	Tracking 51813 as yet unmatched pairs. 245 records in RAM.
INFO	2026-06-08 08:24:17	MarkDuplicates	Read    51,000,000 records.  Elapsed time: 00:01:35s.  Time for last 1,000,000:    1s.  Last read position: chr1:226,367,515
INFO	2026-06-08 08:24:17	MarkDuplicates	Tracking 52798 as yet unmatched pairs. 280 records in RAM.
INFO	2026-06-08 08:24:20	MarkDuplicates	Read    52,000,000 records.  Elapsed time: 00:01:37s.  Time for last 1,000,000:    2s.  Last read position: chr1:228,499,288
INFO	2026-06-08 08:24:20	MarkDuplicates	Tracking 53862 as yet unmatched pairs. 12 records in RAM.
INFO	2026-06-08 08:24:21	MarkDuplicates	Read    53,000,000 records.  Elapsed time: 00:01:39s.  Time for last 1,000,000:    1s.  Last read position: chr1:234,609,450
INFO	2026-06-08 08:24:21	MarkDuplicates	Tracking 55766 as yet unmatched pairs. 153 records in RAM.
INFO	2026-06-08 08:24:23	MarkDuplicates	Read    54,000,000 records.  Elapsed time: 00:01:40s.  Time for last 1,000,000:    1s.  Last read position: chr1:244,857,596
INFO	2026-06-08 08:24:23	MarkDuplicates	Tracking 57316 as yet unmatched pairs. 844 records in RAM.
INFO	2026-06-08 08:24:25	MarkDuplicates	Read    55,000,000 records.  Elapsed time: 00:01:43s.  Time for last 1,000,000:    2s.  Last read position: chr2:3,429,648
INFO	2026-06-08 08:24:25	MarkDuplicates	Tracking 57781 as yet unmatched pairs. 56541 records in RAM.
INFO	2026-06-08 08:24:28	MarkDuplicates	Read    56,000,000 records.  Elapsed time: 00:01:45s.  Time for last 1,000,000:    2s.  Last read position: chr2:11,767,762
INFO	2026-06-08 08:24:28	MarkDuplicates	Tracking 59458 as yet unmatched pairs. 58207 records in RAM.
INFO	2026-06-08 08:24:30	MarkDuplicates	Read    57,000,000 records.  Elapsed time: 00:01:48s.  Time for last 1,000,000:    2s.  Last read position: chr2:24,683,066
INFO	2026-06-08 08:24:30	MarkDuplicates	Tracking 60264 as yet unmatched pairs. 58960 records in RAM.
INFO	2026-06-08 08:24:32	MarkDuplicates	Read    58,000,000 records.  Elapsed time: 00:01:50s.  Time for last 1,000,000:    2s.  Last read position: chr2:27,040,063
INFO	2026-06-08 08:24:32	MarkDuplicates	Tracking 61155 as yet unmatched pairs. 59833 records in RAM.
INFO	2026-06-08 08:24:34	MarkDuplicates	Read    59,000,000 records.  Elapsed time: 00:01:51s.  Time for last 1,000,000:    1s.  Last read position: chr2:28,778,935
INFO	2026-06-08 08:24:34	MarkDuplicates	Tracking 63073 as yet unmatched pairs. 61743 records in RAM.
INFO	2026-06-08 08:24:36	MarkDuplicates	Read    60,000,000 records.  Elapsed time: 00:01:53s.  Time for last 1,000,000:    1s.  Last read position: chr2:32,916,254
INFO	2026-06-08 08:24:36	MarkDuplicates	Tracking 93123 as yet unmatched pairs. 59605 records in RAM.
INFO	2026-06-08 08:24:37	MarkDuplicates	Read    61,000,000 records.  Elapsed time: 00:01:55s.  Time for last 1,000,000:    1s.  Last read position: chr2:32,916,264
INFO	2026-06-08 08:24:37	MarkDuplicates	Tracking 448464 as yet unmatched pairs. 41223 records in RAM.
INFO	2026-06-08 08:24:39	MarkDuplicates	Read    62,000,000 records.  Elapsed time: 00:01:56s.  Time for last 1,000,000:    1s.  Last read position: chr2:32,916,406
INFO	2026-06-08 08:24:39	MarkDuplicates	Tracking 621397 as yet unmatched pairs. 31979 records in RAM.
INFO	2026-06-08 08:24:40	MarkDuplicates	Read    63,000,000 records.  Elapsed time: 00:01:58s.  Time for last 1,000,000:    1s.  Last read position: chr2:36,857,829
INFO	2026-06-08 08:24:40	MarkDuplicates	Tracking 669142 as yet unmatched pairs. 29657 records in RAM.
INFO	2026-06-08 08:24:42	MarkDuplicates	Read    64,000,000 records.  Elapsed time: 00:01:59s.  Time for last 1,000,000:    1s.  Last read position: chr2:43,224,796
INFO	2026-06-08 08:24:42	MarkDuplicates	Tracking 667816 as yet unmatched pairs. 28311 records in RAM.
INFO	2026-06-08 08:24:44	MarkDuplicates	Read    65,000,000 records.  Elapsed time: 00:02:01s.  Time for last 1,000,000:    1s.  Last read position: chr2:47,403,231
INFO	2026-06-08 08:24:44	MarkDuplicates	Tracking 666807 as yet unmatched pairs. 27280 records in RAM.
INFO	2026-06-08 08:24:45	MarkDuplicates	Read    66,000,000 records.  Elapsed time: 00:02:03s.  Time for last 1,000,000:    1s.  Last read position: chr2:54,873,523
INFO	2026-06-08 08:24:45	MarkDuplicates	Tracking 665727 as yet unmatched pairs. 26179 records in RAM.
INFO	2026-06-08 08:24:47	MarkDuplicates	Read    67,000,000 records.  Elapsed time: 00:02:04s.  Time for last 1,000,000:    1s.  Last read position: chr2:60,917,002
INFO	2026-06-08 08:24:47	MarkDuplicates	Tracking 665519 as yet unmatched pairs. 25924 records in RAM.
INFO	2026-06-08 08:24:49	MarkDuplicates	Read    68,000,000 records.  Elapsed time: 00:02:07s.  Time for last 1,000,000:    2s.  Last read position: chr2:64,636,758
INFO	2026-06-08 08:24:49	MarkDuplicates	Tracking 664411 as yet unmatched pairs. 24786 records in RAM.
INFO	2026-06-08 08:24:51	MarkDuplicates	Read    69,000,000 records.  Elapsed time: 00:02:08s.  Time for last 1,000,000:    1s.  Last read position: chr2:70,088,343
INFO	2026-06-08 08:24:51	MarkDuplicates	Tracking 663650 as yet unmatched pairs. 24012 records in RAM.
INFO	2026-06-08 08:24:52	MarkDuplicates	Read    70,000,000 records.  Elapsed time: 00:02:10s.  Time for last 1,000,000:    1s.  Last read position: chr2:74,165,261
INFO	2026-06-08 08:24:52	MarkDuplicates	Tracking 662984 as yet unmatched pairs. 23321 records in RAM.
INFO	2026-06-08 08:24:54	MarkDuplicates	Read    71,000,000 records.  Elapsed time: 00:02:12s.  Time for last 1,000,000:    1s.  Last read position: chr2:75,689,076
INFO	2026-06-08 08:24:54	MarkDuplicates	Tracking 661442 as yet unmatched pairs. 21769 records in RAM.
INFO	2026-06-08 08:24:56	MarkDuplicates	Read    72,000,000 records.  Elapsed time: 00:02:13s.  Time for last 1,000,000:    1s.  Last read position: chr2:86,932,879
INFO	2026-06-08 08:24:56	MarkDuplicates	Tracking 660355 as yet unmatched pairs. 20667 records in RAM.
INFO	2026-06-08 08:24:57	MarkDuplicates	Read    73,000,000 records.  Elapsed time: 00:02:15s.  Time for last 1,000,000:    1s.  Last read position: chr2:96,274,927
INFO	2026-06-08 08:24:57	MarkDuplicates	Tracking 658741 as yet unmatched pairs. 19027 records in RAM.
INFO	2026-06-08 08:24:59	MarkDuplicates	Read    74,000,000 records.  Elapsed time: 00:02:17s.  Time for last 1,000,000:    1s.  Last read position: chr2:98,500,625
INFO	2026-06-08 08:24:59	MarkDuplicates	Tracking 657564 as yet unmatched pairs. 17829 records in RAM.
INFO	2026-06-08 08:25:01	MarkDuplicates	Read    75,000,000 records.  Elapsed time: 00:02:18s.  Time for last 1,000,000:    1s.  Last read position: chr2:108,719,546
INFO	2026-06-08 08:25:01	MarkDuplicates	Tracking 657318 as yet unmatched pairs. 17558 records in RAM.
INFO	2026-06-08 08:25:02	MarkDuplicates	Read    76,000,000 records.  Elapsed time: 00:02:20s.  Time for last 1,000,000:    1s.  Last read position: chr2:112,390,000
INFO	2026-06-08 08:25:02	MarkDuplicates	Tracking 656176 as yet unmatched pairs. 16376 records in RAM.
INFO	2026-06-08 08:25:05	MarkDuplicates	Read    77,000,000 records.  Elapsed time: 00:02:22s.  Time for last 1,000,000:    2s.  Last read position: chr2:121,425,199
INFO	2026-06-08 08:25:05	MarkDuplicates	Tracking 655503 as yet unmatched pairs. 15681 records in RAM.
INFO	2026-06-08 08:25:06	MarkDuplicates	Read    78,000,000 records.  Elapsed time: 00:02:24s.  Time for last 1,000,000:    1s.  Last read position: chr2:131,484,079
INFO	2026-06-08 08:25:06	MarkDuplicates	Tracking 654764 as yet unmatched pairs. 14915 records in RAM.
INFO	2026-06-08 08:25:08	MarkDuplicates	Read    79,000,000 records.  Elapsed time: 00:02:25s.  Time for last 1,000,000:    1s.  Last read position: chr2:148,469,236
INFO	2026-06-08 08:25:08	MarkDuplicates	Tracking 654012 as yet unmatched pairs. 14111 records in RAM.
INFO	2026-06-08 08:25:10	MarkDuplicates	Read    80,000,000 records.  Elapsed time: 00:02:27s.  Time for last 1,000,000:    2s.  Last read position: chr2:159,748,103
INFO	2026-06-08 08:25:10	MarkDuplicates	Tracking 653561 as yet unmatched pairs. 13635 records in RAM.
INFO	2026-06-08 08:25:12	MarkDuplicates	Read    81,000,000 records.  Elapsed time: 00:02:30s.  Time for last 1,000,000:    2s.  Last read position: chr2:171,101,061
INFO	2026-06-08 08:25:12	MarkDuplicates	Tracking 652401 as yet unmatched pairs. 12438 records in RAM.
INFO	2026-06-08 08:25:14	MarkDuplicates	Read    82,000,000 records.  Elapsed time: 00:02:31s.  Time for last 1,000,000:    1s.  Last read position: chr2:177,230,818
INFO	2026-06-08 08:25:14	MarkDuplicates	Tracking 651132 as yet unmatched pairs. 11152 records in RAM.
INFO	2026-06-08 08:25:15	MarkDuplicates	Read    83,000,000 records.  Elapsed time: 00:02:33s.  Time for last 1,000,000:    1s.  Last read position: chr2:180,982,022
INFO	2026-06-08 08:25:15	MarkDuplicates	Tracking 650282 as yet unmatched pairs. 10282 records in RAM.
INFO	2026-06-08 08:25:17	MarkDuplicates	Read    84,000,000 records.  Elapsed time: 00:02:35s.  Time for last 1,000,000:    1s.  Last read position: chr2:190,895,614
INFO	2026-06-08 08:25:17	MarkDuplicates	Tracking 649478 as yet unmatched pairs. 9457 records in RAM.
INFO	2026-06-08 08:25:19	MarkDuplicates	Read    85,000,000 records.  Elapsed time: 00:02:36s.  Time for last 1,000,000:    1s.  Last read position: chr2:197,401,497
INFO	2026-06-08 08:25:19	MarkDuplicates	Tracking 648604 as yet unmatched pairs. 8559 records in RAM.
INFO	2026-06-08 08:25:21	MarkDuplicates	Read    86,000,000 records.  Elapsed time: 00:02:38s.  Time for last 1,000,000:    1s.  Last read position: chr2:202,555,666
INFO	2026-06-08 08:25:21	MarkDuplicates	Tracking 647485 as yet unmatched pairs. 7424 records in RAM.
INFO	2026-06-08 08:25:22	MarkDuplicates	Read    87,000,000 records.  Elapsed time: 00:02:40s.  Time for last 1,000,000:    1s.  Last read position: chr2:213,056,928
INFO	2026-06-08 08:25:22	MarkDuplicates	Tracking 647258 as yet unmatched pairs. 7177 records in RAM.
INFO	2026-06-08 08:25:24	MarkDuplicates	Read    88,000,000 records.  Elapsed time: 00:02:41s.  Time for last 1,000,000:    1s.  Last read position: chr2:218,656,162
INFO	2026-06-08 08:25:24	MarkDuplicates	Tracking 645858 as yet unmatched pairs. 5760 records in RAM.
INFO	2026-06-08 08:25:26	MarkDuplicates	Read    89,000,000 records.  Elapsed time: 00:02:43s.  Time for last 1,000,000:    1s.  Last read position: chr2:223,912,966
INFO	2026-06-08 08:25:26	MarkDuplicates	Tracking 644713 as yet unmatched pairs. 4523 records in RAM.
INFO	2026-06-08 08:25:27	MarkDuplicates	Read    90,000,000 records.  Elapsed time: 00:02:45s.  Time for last 1,000,000:    1s.  Last read position: chr2:230,444,255
INFO	2026-06-08 08:25:27	MarkDuplicates	Tracking 644265 as yet unmatched pairs. 4057 records in RAM.
INFO	2026-06-08 08:25:29	MarkDuplicates	Read    91,000,000 records.  Elapsed time: 00:02:46s.  Time for last 1,000,000:    1s.  Last read position: chr2:232,807,699
INFO	2026-06-08 08:25:29	MarkDuplicates	Tracking 642881 as yet unmatched pairs. 2655 records in RAM.
INFO	2026-06-08 08:25:30	MarkDuplicates	Read    92,000,000 records.  Elapsed time: 00:02:48s.  Time for last 1,000,000:    1s.  Last read position: chr2:238,261,739
INFO	2026-06-08 08:25:30	MarkDuplicates	Tracking 641889 as yet unmatched pairs. 1627 records in RAM.
INFO	2026-06-08 08:25:33	MarkDuplicates	Read    93,000,000 records.  Elapsed time: 00:02:50s.  Time for last 1,000,000:    2s.  Last read position: chr2:241,498,703
INFO	2026-06-08 08:25:33	MarkDuplicates	Tracking 640942 as yet unmatched pairs. 658 records in RAM.
INFO	2026-06-08 08:25:35	MarkDuplicates	Read    94,000,000 records.  Elapsed time: 00:02:52s.  Time for last 1,000,000:    1s.  Last read position: chr3:5,195,257
INFO	2026-06-08 08:25:35	MarkDuplicates	Tracking 640683 as yet unmatched pairs. 30373 records in RAM.
INFO	2026-06-08 08:25:36	MarkDuplicates	Read    95,000,000 records.  Elapsed time: 00:02:54s.  Time for last 1,000,000:    1s.  Last read position: chr3:10,249,242
INFO	2026-06-08 08:25:36	MarkDuplicates	Tracking 639203 as yet unmatched pairs. 28883 records in RAM.
INFO	2026-06-08 08:25:38	MarkDuplicates	Read    96,000,000 records.  Elapsed time: 00:02:55s.  Time for last 1,000,000:    1s.  Last read position: chr3:13,351,930
INFO	2026-06-08 08:25:38	MarkDuplicates	Tracking 637559 as yet unmatched pairs. 27231 records in RAM.
INFO	2026-06-08 08:25:40	MarkDuplicates	Read    97,000,000 records.  Elapsed time: 00:02:57s.  Time for last 1,000,000:    1s.  Last read position: chr3:15,738,567
INFO	2026-06-08 08:25:40	MarkDuplicates	Tracking 636627 as yet unmatched pairs. 26276 records in RAM.
INFO	2026-06-08 08:25:41	MarkDuplicates	Read    98,000,000 records.  Elapsed time: 00:02:59s.  Time for last 1,000,000:    1s.  Last read position: chr3:22,382,234
INFO	2026-06-08 08:25:41	MarkDuplicates	Tracking 635903 as yet unmatched pairs. 25536 records in RAM.
INFO	2026-06-08 08:25:43	MarkDuplicates	Read    99,000,000 records.  Elapsed time: 00:03:01s.  Time for last 1,000,000:    1s.  Last read position: chr3:33,425,724
INFO	2026-06-08 08:25:43	MarkDuplicates	Tracking 634855 as yet unmatched pairs. 24463 records in RAM.
INFO	2026-06-08 08:25:45	MarkDuplicates	Read   100,000,000 records.  Elapsed time: 00:03:02s.  Time for last 1,000,000:    1s.  Last read position: chr3:39,410,760
INFO	2026-06-08 08:25:45	MarkDuplicates	Tracking 636437 as yet unmatched pairs. 26018 records in RAM.
INFO	2026-06-08 08:25:47	MarkDuplicates	Read   101,000,000 records.  Elapsed time: 00:03:04s.  Time for last 1,000,000:    1s.  Last read position: chr3:44,631,147
INFO	2026-06-08 08:25:47	MarkDuplicates	Tracking 632831 as yet unmatched pairs. 22391 records in RAM.
INFO	2026-06-08 08:25:48	MarkDuplicates	Read   102,000,000 records.  Elapsed time: 00:03:06s.  Time for last 1,000,000:    1s.  Last read position: chr3:47,057,026
INFO	2026-06-08 08:25:48	MarkDuplicates	Tracking 631877 as yet unmatched pairs. 21410 records in RAM.
INFO	2026-06-08 08:25:50	MarkDuplicates	Read   103,000,000 records.  Elapsed time: 00:03:08s.  Time for last 1,000,000:    1s.  Last read position: chr3:47,917,101
INFO	2026-06-08 08:25:50	MarkDuplicates	Tracking 631390 as yet unmatched pairs. 20908 records in RAM.
INFO	2026-06-08 08:25:52	MarkDuplicates	Read   104,000,000 records.  Elapsed time: 00:03:09s.  Time for last 1,000,000:    1s.  Last read position: chr3:49,016,158
INFO	2026-06-08 08:25:52	MarkDuplicates	Tracking 629509 as yet unmatched pairs. 19014 records in RAM.
INFO	2026-06-08 08:25:54	MarkDuplicates	Read   105,000,000 records.  Elapsed time: 00:03:11s.  Time for last 1,000,000:    1s.  Last read position: chr3:49,698,675
INFO	2026-06-08 08:25:54	MarkDuplicates	Tracking 628480 as yet unmatched pairs. 17974 records in RAM.
INFO	2026-06-08 08:25:56	MarkDuplicates	Read   106,000,000 records.  Elapsed time: 00:03:13s.  Time for last 1,000,000:    2s.  Last read position: chr3:51,393,945
INFO	2026-06-08 08:25:56	MarkDuplicates	Tracking 627553 as yet unmatched pairs. 17007 records in RAM.
INFO	2026-06-08 08:25:57	MarkDuplicates	Read   107,000,000 records.  Elapsed time: 00:03:15s.  Time for last 1,000,000:    1s.  Last read position: chr3:52,473,757
INFO	2026-06-08 08:25:57	MarkDuplicates	Tracking 626216 as yet unmatched pairs. 15653 records in RAM.
INFO	2026-06-08 08:25:59	MarkDuplicates	Read   108,000,000 records.  Elapsed time: 00:03:16s.  Time for last 1,000,000:    1s.  Last read position: chr3:56,668,547
INFO	2026-06-08 08:25:59	MarkDuplicates	Tracking 625069 as yet unmatched pairs. 14500 records in RAM.
INFO	2026-06-08 08:26:01	MarkDuplicates	Read   109,000,000 records.  Elapsed time: 00:03:18s.  Time for last 1,000,000:    1s.  Last read position: chr3:69,048,552
INFO	2026-06-08 08:26:01	MarkDuplicates	Tracking 624321 as yet unmatched pairs. 13725 records in RAM.
INFO	2026-06-08 08:26:02	MarkDuplicates	Read   110,000,000 records.  Elapsed time: 00:03:20s.  Time for last 1,000,000:    1s.  Last read position: chr3:101,585,439
INFO	2026-06-08 08:26:02	MarkDuplicates	Tracking 623774 as yet unmatched pairs. 13157 records in RAM.
INFO	2026-06-08 08:26:04	MarkDuplicates	Read   111,000,000 records.  Elapsed time: 00:03:21s.  Time for last 1,000,000:    1s.  Last read position: chr3:113,619,691
INFO	2026-06-08 08:26:04	MarkDuplicates	Tracking 622767 as yet unmatched pairs. 12136 records in RAM.
INFO	2026-06-08 08:26:06	MarkDuplicates	Read   112,000,000 records.  Elapsed time: 00:03:23s.  Time for last 1,000,000:    1s.  Last read position: chr3:121,748,020
INFO	2026-06-08 08:26:06	MarkDuplicates	Tracking 621779 as yet unmatched pairs. 11121 records in RAM.
INFO	2026-06-08 08:26:08	MarkDuplicates	Read   113,000,000 records.  Elapsed time: 00:03:25s.  Time for last 1,000,000:    1s.  Last read position: chr3:123,955,705
INFO	2026-06-08 08:26:08	MarkDuplicates	Tracking 621059 as yet unmatched pairs. 10383 records in RAM.
INFO	2026-06-08 08:26:09	MarkDuplicates	Read   114,000,000 records.  Elapsed time: 00:03:27s.  Time for last 1,000,000:    1s.  Last read position: chr3:128,806,382
INFO	2026-06-08 08:26:09	MarkDuplicates	Tracking 620592 as yet unmatched pairs. 9873 records in RAM.
INFO	2026-06-08 08:26:11	MarkDuplicates	Read   115,000,000 records.  Elapsed time: 00:03:28s.  Time for last 1,000,000:    1s.  Last read position: chr3:133,573,984
INFO	2026-06-08 08:26:11	MarkDuplicates	Tracking 618872 as yet unmatched pairs. 8121 records in RAM.
INFO	2026-06-08 08:26:13	MarkDuplicates	Read   116,000,000 records.  Elapsed time: 00:03:30s.  Time for last 1,000,000:    2s.  Last read position: chr3:141,876,745
INFO	2026-06-08 08:26:13	MarkDuplicates	Tracking 617994 as yet unmatched pairs. 7213 records in RAM.
INFO	2026-06-08 08:26:15	MarkDuplicates	Read   117,000,000 records.  Elapsed time: 00:03:32s.  Time for last 1,000,000:    1s.  Last read position: chr3:152,316,047
INFO	2026-06-08 08:26:15	MarkDuplicates	Tracking 617169 as yet unmatched pairs. 6374 records in RAM.
INFO	2026-06-08 08:26:17	MarkDuplicates	Read   118,000,000 records.  Elapsed time: 00:03:34s.  Time for last 1,000,000:    1s.  Last read position: chr3:168,059,254
INFO	2026-06-08 08:26:17	MarkDuplicates	Tracking 616196 as yet unmatched pairs. 5369 records in RAM.
INFO	2026-06-08 08:26:19	MarkDuplicates	Read   119,000,000 records.  Elapsed time: 00:03:36s.  Time for last 1,000,000:    2s.  Last read position: chr3:179,218,222
INFO	2026-06-08 08:26:19	MarkDuplicates	Tracking 615560 as yet unmatched pairs. 4693 records in RAM.
INFO	2026-06-08 08:26:21	MarkDuplicates	Read   120,000,000 records.  Elapsed time: 00:03:38s.  Time for last 1,000,000:    1s.  Last read position: chr3:184,174,922
INFO	2026-06-08 08:26:21	MarkDuplicates	Tracking 614361 as yet unmatched pairs. 3473 records in RAM.
INFO	2026-06-08 08:26:23	MarkDuplicates	Read   121,000,000 records.  Elapsed time: 00:03:40s.  Time for last 1,000,000:    1s.  Last read position: chr3:186,900,232
INFO	2026-06-08 08:26:23	MarkDuplicates	Tracking 613057 as yet unmatched pairs. 2149 records in RAM.
INFO	2026-06-08 08:26:24	MarkDuplicates	Read   122,000,000 records.  Elapsed time: 00:03:42s.  Time for last 1,000,000:    1s.  Last read position: chr3:195,908,686
INFO	2026-06-08 08:26:24	MarkDuplicates	Tracking 612259 as yet unmatched pairs. 1323 records in RAM.
INFO	2026-06-08 08:26:26	MarkDuplicates	Read   123,000,000 records.  Elapsed time: 00:03:44s.  Time for last 1,000,000:    1s.  Last read position: chr3:198,193,341
INFO	2026-06-08 08:26:26	MarkDuplicates	Tracking 610959 as yet unmatched pairs. 0 records in RAM.
INFO	2026-06-08 08:26:28	MarkDuplicates	Read   124,000,000 records.  Elapsed time: 00:03:45s.  Time for last 1,000,000:    1s.  Last read position: chr4:1,711,871
INFO	2026-06-08 08:26:28	MarkDuplicates	Tracking 610556 as yet unmatched pairs. 15624 records in RAM.
INFO	2026-06-08 08:26:30	MarkDuplicates	Read   125,000,000 records.  Elapsed time: 00:03:47s.  Time for last 1,000,000:    1s.  Last read position: chr4:2,894,046
INFO	2026-06-08 08:26:30	MarkDuplicates	Tracking 608986 as yet unmatched pairs. 14049 records in RAM.
INFO	2026-06-08 08:26:32	MarkDuplicates	Read   126,000,000 records.  Elapsed time: 00:03:49s.  Time for last 1,000,000:    1s.  Last read position: chr4:6,733,540
INFO	2026-06-08 08:26:32	MarkDuplicates	Tracking 607284 as yet unmatched pairs. 12329 records in RAM.
INFO	2026-06-08 08:26:33	MarkDuplicates	Read   127,000,000 records.  Elapsed time: 00:03:50s.  Time for last 1,000,000:    1s.  Last read position: chr4:15,816,534
INFO	2026-06-08 08:26:33	MarkDuplicates	Tracking 606492 as yet unmatched pairs. 11522 records in RAM.
INFO	2026-06-08 08:26:35	MarkDuplicates	Read   128,000,000 records.  Elapsed time: 00:03:53s.  Time for last 1,000,000:    2s.  Last read position: chr4:38,828,710
INFO	2026-06-08 08:26:35	MarkDuplicates	Tracking 605328 as yet unmatched pairs. 10338 records in RAM.
INFO	2026-06-08 08:26:37	MarkDuplicates	Read   129,000,000 records.  Elapsed time: 00:03:54s.  Time for last 1,000,000:    1s.  Last read position: chr4:42,464,714
INFO	2026-06-08 08:26:37	MarkDuplicates	Tracking 605001 as yet unmatched pairs. 9991 records in RAM.
INFO	2026-06-08 08:26:38	MarkDuplicates	Read   130,000,000 records.  Elapsed time: 00:03:56s.  Time for last 1,000,000:    1s.  Last read position: chr4:56,345,281
INFO	2026-06-08 08:26:38	MarkDuplicates	Tracking 603670 as yet unmatched pairs. 8622 records in RAM.
INFO	2026-06-08 08:26:40	MarkDuplicates	Read   131,000,000 records.  Elapsed time: 00:03:58s.  Time for last 1,000,000:    1s.  Last read position: chr4:73,177,492
INFO	2026-06-08 08:26:40	MarkDuplicates	Tracking 602528 as yet unmatched pairs. 7456 records in RAM.
INFO	2026-06-08 08:26:42	MarkDuplicates	Read   132,000,000 records.  Elapsed time: 00:03:59s.  Time for last 1,000,000:    1s.  Last read position: chr4:82,861,679
INFO	2026-06-08 08:26:42	MarkDuplicates	Tracking 602164 as yet unmatched pairs. 7064 records in RAM.
INFO	2026-06-08 08:26:43	MarkDuplicates	Read   133,000,000 records.  Elapsed time: 00:04:01s.  Time for last 1,000,000:    1s.  Last read position: chr4:94,249,719
INFO	2026-06-08 08:26:43	MarkDuplicates	Tracking 600825 as yet unmatched pairs. 5701 records in RAM.
INFO	2026-06-08 08:26:45	MarkDuplicates	Read   134,000,000 records.  Elapsed time: 00:04:02s.  Time for last 1,000,000:    1s.  Last read position: chr4:105,453,598
INFO	2026-06-08 08:26:45	MarkDuplicates	Tracking 600336 as yet unmatched pairs. 5176 records in RAM.
INFO	2026-06-08 08:26:47	MarkDuplicates	Read   135,000,000 records.  Elapsed time: 00:04:04s.  Time for last 1,000,000:    1s.  Last read position: chr4:121,683,458
INFO	2026-06-08 08:26:47	MarkDuplicates	Tracking 600068 as yet unmatched pairs. 4895 records in RAM.
INFO	2026-06-08 08:26:48	MarkDuplicates	Read   136,000,000 records.  Elapsed time: 00:04:06s.  Time for last 1,000,000:    1s.  Last read position: chr4:143,538,855
INFO	2026-06-08 08:26:48	MarkDuplicates	Tracking 598556 as yet unmatched pairs. 3357 records in RAM.
INFO	2026-06-08 08:26:50	MarkDuplicates	Read   137,000,000 records.  Elapsed time: 00:04:07s.  Time for last 1,000,000:    1s.  Last read position: chr4:151,104,192
INFO	2026-06-08 08:26:50	MarkDuplicates	Tracking 601595 as yet unmatched pairs. 6368 records in RAM.
INFO	2026-06-08 08:26:52	MarkDuplicates	Read   138,000,000 records.  Elapsed time: 00:04:10s.  Time for last 1,000,000:    2s.  Last read position: chr4:159,418,425
INFO	2026-06-08 08:26:52	MarkDuplicates	Tracking 596745 as yet unmatched pairs. 1478 records in RAM.
INFO	2026-06-08 08:26:54	MarkDuplicates	Read   139,000,000 records.  Elapsed time: 00:04:11s.  Time for last 1,000,000:    1s.  Last read position: chr4:185,210,054
INFO	2026-06-08 08:26:54	MarkDuplicates	Tracking 598350 as yet unmatched pairs. 3053 records in RAM.
INFO	2026-06-08 08:26:56	MarkDuplicates	Read   140,000,000 records.  Elapsed time: 00:04:13s.  Time for last 1,000,000:    1s.  Last read position: chr5:1,344,723
INFO	2026-06-08 08:26:56	MarkDuplicates	Tracking 594890 as yet unmatched pairs. 27867 records in RAM.
INFO	2026-06-08 08:26:58	MarkDuplicates	Read   141,000,000 records.  Elapsed time: 00:04:16s.  Time for last 1,000,000:    2s.  Last read position: chr5:14,143,829
INFO	2026-06-08 08:26:58	MarkDuplicates	Tracking 596379 as yet unmatched pairs. 29308 records in RAM.
INFO	2026-06-08 08:27:01	MarkDuplicates	Read   142,000,000 records.  Elapsed time: 00:04:18s.  Time for last 1,000,000:    2s.  Last read position: chr5:14,461,226
INFO	2026-06-08 08:27:01	MarkDuplicates	Tracking 593663 as yet unmatched pairs. 26575 records in RAM.
INFO	2026-06-08 08:27:02	MarkDuplicates	Read   143,000,000 records.  Elapsed time: 00:04:20s.  Time for last 1,000,000:    1s.  Last read position: chr5:32,310,196
INFO	2026-06-08 08:27:02	MarkDuplicates	Tracking 591088 as yet unmatched pairs. 23982 records in RAM.
INFO	2026-06-08 08:27:04	MarkDuplicates	Read   144,000,000 records.  Elapsed time: 00:04:22s.  Time for last 1,000,000:    1s.  Last read position: chr5:40,834,180
INFO	2026-06-08 08:27:04	MarkDuplicates	Tracking 590740 as yet unmatched pairs. 23605 records in RAM.
INFO	2026-06-08 08:27:06	MarkDuplicates	Read   145,000,000 records.  Elapsed time: 00:04:23s.  Time for last 1,000,000:    1s.  Last read position: chr5:60,887,440
INFO	2026-06-08 08:27:06	MarkDuplicates	Tracking 589533 as yet unmatched pairs. 22377 records in RAM.
INFO	2026-06-08 08:27:07	MarkDuplicates	Read   146,000,000 records.  Elapsed time: 00:04:25s.  Time for last 1,000,000:    1s.  Last read position: chr5:70,025,424
INFO	2026-06-08 08:27:07	MarkDuplicates	Tracking 588804 as yet unmatched pairs. 21628 records in RAM.
INFO	2026-06-08 08:27:09	MarkDuplicates	Read   147,000,000 records.  Elapsed time: 00:04:26s.  Time for last 1,000,000:    1s.  Last read position: chr5:73,508,873
INFO	2026-06-08 08:27:09	MarkDuplicates	Tracking 588260 as yet unmatched pairs. 21069 records in RAM.
INFO	2026-06-08 08:27:11	MarkDuplicates	Read   148,000,000 records.  Elapsed time: 00:04:28s.  Time for last 1,000,000:    1s.  Last read position: chr5:81,308,597
INFO	2026-06-08 08:27:11	MarkDuplicates	Tracking 587452 as yet unmatched pairs. 20238 records in RAM.
INFO	2026-06-08 08:27:12	MarkDuplicates	Read   149,000,000 records.  Elapsed time: 00:04:30s.  Time for last 1,000,000:    1s.  Last read position: chr5:95,600,870
INFO	2026-06-08 08:27:12	MarkDuplicates	Tracking 586671 as yet unmatched pairs. 19400 records in RAM.
INFO	2026-06-08 08:27:14	MarkDuplicates	Read   150,000,000 records.  Elapsed time: 00:04:32s.  Time for last 1,000,000:    1s.  Last read position: chr5:109,378,917
INFO	2026-06-08 08:27:14	MarkDuplicates	Tracking 586229 as yet unmatched pairs. 18933 records in RAM.
INFO	2026-06-08 08:27:16	MarkDuplicates	Read   151,000,000 records.  Elapsed time: 00:04:33s.  Time for last 1,000,000:    1s.  Last read position: chr5:123,586,024
INFO	2026-06-08 08:27:16	MarkDuplicates	Tracking 584974 as yet unmatched pairs. 17668 records in RAM.
INFO	2026-06-08 08:27:18	MarkDuplicates	Read   152,000,000 records.  Elapsed time: 00:04:35s.  Time for last 1,000,000:    1s.  Last read position: chr5:133,076,873
INFO	2026-06-08 08:27:18	MarkDuplicates	Tracking 584203 as yet unmatched pairs. 16867 records in RAM.
INFO	2026-06-08 08:27:19	MarkDuplicates	Read   153,000,000 records.  Elapsed time: 00:04:37s.  Time for last 1,000,000:    1s.  Last read position: chr5:138,391,318
INFO	2026-06-08 08:27:19	MarkDuplicates	Tracking 583317 as yet unmatched pairs. 15957 records in RAM.
INFO	2026-06-08 08:27:21	MarkDuplicates	Read   154,000,000 records.  Elapsed time: 00:04:38s.  Time for last 1,000,000:    1s.  Last read position: chr5:140,436,532
INFO	2026-06-08 08:27:21	MarkDuplicates	Tracking 582194 as yet unmatched pairs. 14662 records in RAM.
INFO	2026-06-08 08:27:22	MarkDuplicates	Read   155,000,000 records.  Elapsed time: 00:04:40s.  Time for last 1,000,000:    1s.  Last read position: chr5:141,974,844
INFO	2026-06-08 08:27:22	MarkDuplicates	Tracking 581135 as yet unmatched pairs. 13590 records in RAM.
INFO	2026-06-08 08:27:24	MarkDuplicates	Read   156,000,000 records.  Elapsed time: 00:04:42s.  Time for last 1,000,000:    2s.  Last read position: chr5:150,378,947
INFO	2026-06-08 08:27:24	MarkDuplicates	Tracking 580156 as yet unmatched pairs. 12604 records in RAM.
INFO	2026-06-08 08:27:27	MarkDuplicates	Read   157,000,000 records.  Elapsed time: 00:04:44s.  Time for last 1,000,000:    2s.  Last read position: chr5:150,403,125
INFO	2026-06-08 08:27:27	MarkDuplicates	Tracking 599034 as yet unmatched pairs. 31456 records in RAM.
INFO	2026-06-08 08:27:29	MarkDuplicates	Read   158,000,000 records.  Elapsed time: 00:04:46s.  Time for last 1,000,000:    1s.  Last read position: chr5:150,406,267
INFO	2026-06-08 08:27:29	MarkDuplicates	Tracking 614149 as yet unmatched pairs. 46559 records in RAM.
INFO	2026-06-08 08:27:31	MarkDuplicates	Read   159,000,000 records.  Elapsed time: 00:04:48s.  Time for last 1,000,000:    2s.  Last read position: chr5:150,648,661
INFO	2026-06-08 08:27:31	MarkDuplicates	Tracking 576977 as yet unmatched pairs. 9370 records in RAM.
INFO	2026-06-08 08:27:33	MarkDuplicates	Read   160,000,000 records.  Elapsed time: 00:04:50s.  Time for last 1,000,000:    2s.  Last read position: chr5:154,399,463
INFO	2026-06-08 08:27:33	MarkDuplicates	Tracking 575557 as yet unmatched pairs. 7936 records in RAM.
INFO	2026-06-08 08:27:34	MarkDuplicates	Read   161,000,000 records.  Elapsed time: 00:04:52s.  Time for last 1,000,000:    1s.  Last read position: chr5:160,414,345
INFO	2026-06-08 08:27:34	MarkDuplicates	Tracking 574554 as yet unmatched pairs. 6912 records in RAM.
INFO	2026-06-08 08:27:36	MarkDuplicates	Read   162,000,000 records.  Elapsed time: 00:04:54s.  Time for last 1,000,000:    1s.  Last read position: chr5:171,391,321
INFO	2026-06-08 08:27:36	MarkDuplicates	Tracking 581175 as yet unmatched pairs. 13523 records in RAM.
INFO	2026-06-08 08:27:38	MarkDuplicates	Read   163,000,000 records.  Elapsed time: 00:04:55s.  Time for last 1,000,000:    1s.  Last read position: chr5:172,872,769
INFO	2026-06-08 08:27:38	MarkDuplicates	Tracking 573217 as yet unmatched pairs. 5564 records in RAM.
INFO	2026-06-08 08:27:39	MarkDuplicates	Read   164,000,000 records.  Elapsed time: 00:04:57s.  Time for last 1,000,000:    1s.  Last read position: chr5:177,306,094
INFO	2026-06-08 08:27:39	MarkDuplicates	Tracking 572520 as yet unmatched pairs. 4850 records in RAM.
INFO	2026-06-08 08:27:41	MarkDuplicates	Read   165,000,000 records.  Elapsed time: 00:04:58s.  Time for last 1,000,000:    1s.  Last read position: chr5:178,119,802
INFO	2026-06-08 08:27:41	MarkDuplicates	Tracking 570625 as yet unmatched pairs. 2945 records in RAM.
INFO	2026-06-08 08:27:43	MarkDuplicates	Read   166,000,000 records.  Elapsed time: 00:05:00s.  Time for last 1,000,000:    1s.  Last read position: chr5:179,820,975
INFO	2026-06-08 08:27:43	MarkDuplicates	Tracking 582506 as yet unmatched pairs. 14823 records in RAM.
INFO	2026-06-08 08:27:45	MarkDuplicates	Read   167,000,000 records.  Elapsed time: 00:05:02s.  Time for last 1,000,000:    1s.  Last read position: chr5:181,236,980
INFO	2026-06-08 08:27:45	MarkDuplicates	Tracking 571587 as yet unmatched pairs. 3900 records in RAM.
INFO	2026-06-08 08:27:46	MarkDuplicates	Read   168,000,000 records.  Elapsed time: 00:05:04s.  Time for last 1,000,000:    1s.  Last read position: chr6:3,154,227
INFO	2026-06-08 08:27:46	MarkDuplicates	Tracking 567061 as yet unmatched pairs. 33363 records in RAM.
INFO	2026-06-08 08:27:48	MarkDuplicates	Read   169,000,000 records.  Elapsed time: 00:05:05s.  Time for last 1,000,000:    1s.  Last read position: chr6:7,400,967
INFO	2026-06-08 08:27:48	MarkDuplicates	Tracking 566067 as yet unmatched pairs. 32339 records in RAM.
INFO	2026-06-08 08:27:50	MarkDuplicates	Read   170,000,000 records.  Elapsed time: 00:05:07s.  Time for last 1,000,000:    1s.  Last read position: chr6:15,251,872
INFO	2026-06-08 08:27:50	MarkDuplicates	Tracking 564994 as yet unmatched pairs. 31253 records in RAM.
INFO	2026-06-08 08:27:51	MarkDuplicates	Read   171,000,000 records.  Elapsed time: 00:05:09s.  Time for last 1,000,000:    1s.  Last read position: chr6:25,303,435
INFO	2026-06-08 08:27:51	MarkDuplicates	Tracking 563928 as yet unmatched pairs. 30106 records in RAM.
INFO	2026-06-08 08:27:53	MarkDuplicates	Read   172,000,000 records.  Elapsed time: 00:05:10s.  Time for last 1,000,000:    1s.  Last read position: chr6:26,273,061
INFO	2026-06-08 08:27:53	MarkDuplicates	Tracking 562948 as yet unmatched pairs. 29115 records in RAM.
INFO	2026-06-08 08:27:54	MarkDuplicates	Read   173,000,000 records.  Elapsed time: 00:05:12s.  Time for last 1,000,000:    1s.  Last read position: chr6:27,866,973
INFO	2026-06-08 08:27:54	MarkDuplicates	Tracking 562280 as yet unmatched pairs. 28442 records in RAM.
INFO	2026-06-08 08:27:56	MarkDuplicates	Read   174,000,000 records.  Elapsed time: 00:05:14s.  Time for last 1,000,000:    1s.  Last read position: chr6:30,198,489
INFO	2026-06-08 08:27:56	MarkDuplicates	Tracking 561139 as yet unmatched pairs. 27294 records in RAM.
INFO	2026-06-08 08:27:58	MarkDuplicates	Read   175,000,000 records.  Elapsed time: 00:05:15s.  Time for last 1,000,000:    1s.  Last read position: chr6:30,730,917
INFO	2026-06-08 08:27:58	MarkDuplicates	Tracking 560084 as yet unmatched pairs. 26233 records in RAM.
INFO	2026-06-08 08:27:59	MarkDuplicates	Read   176,000,000 records.  Elapsed time: 00:05:17s.  Time for last 1,000,000:    1s.  Last read position: chr6:31,558,253
INFO	2026-06-08 08:27:59	MarkDuplicates	Tracking 558993 as yet unmatched pairs. 25139 records in RAM.
INFO	2026-06-08 08:28:02	MarkDuplicates	Read   177,000,000 records.  Elapsed time: 00:05:19s.  Time for last 1,000,000:    2s.  Last read position: chr6:31,647,711
INFO	2026-06-08 08:28:02	MarkDuplicates	Tracking 558279 as yet unmatched pairs. 24419 records in RAM.
INFO	2026-06-08 08:28:04	MarkDuplicates	Read   178,000,000 records.  Elapsed time: 00:05:21s.  Time for last 1,000,000:    2s.  Last read position: chr6:32,155,068
INFO	2026-06-08 08:28:04	MarkDuplicates	Tracking 556730 as yet unmatched pairs. 22867 records in RAM.
INFO	2026-06-08 08:28:06	MarkDuplicates	Read   179,000,000 records.  Elapsed time: 00:05:23s.  Time for last 1,000,000:    2s.  Last read position: chr6:32,842,963
INFO	2026-06-08 08:28:06	MarkDuplicates	Tracking 556413 as yet unmatched pairs. 22540 records in RAM.
INFO	2026-06-08 08:28:08	MarkDuplicates	Read   180,000,000 records.  Elapsed time: 00:05:25s.  Time for last 1,000,000:    1s.  Last read position: chr6:33,069,864
INFO	2026-06-08 08:28:08	MarkDuplicates	Tracking 556266 as yet unmatched pairs. 22382 records in RAM.
INFO	2026-06-08 08:28:09	MarkDuplicates	Read   181,000,000 records.  Elapsed time: 00:05:27s.  Time for last 1,000,000:    1s.  Last read position: chr6:33,412,301
INFO	2026-06-08 08:28:09	MarkDuplicates	Tracking 555753 as yet unmatched pairs. 21863 records in RAM.
INFO	2026-06-08 08:28:11	MarkDuplicates	Read   182,000,000 records.  Elapsed time: 00:05:29s.  Time for last 1,000,000:    1s.  Last read position: chr6:34,836,155
INFO	2026-06-08 08:28:11	MarkDuplicates	Tracking 552619 as yet unmatched pairs. 18718 records in RAM.
INFO	2026-06-08 08:28:13	MarkDuplicates	Read   183,000,000 records.  Elapsed time: 00:05:30s.  Time for last 1,000,000:    1s.  Last read position: chr6:37,027,485
INFO	2026-06-08 08:28:13	MarkDuplicates	Tracking 551672 as yet unmatched pairs. 17747 records in RAM.
INFO	2026-06-08 08:28:15	MarkDuplicates	Read   184,000,000 records.  Elapsed time: 00:05:32s.  Time for last 1,000,000:    1s.  Last read position: chr6:42,650,288
INFO	2026-06-08 08:28:15	MarkDuplicates	Tracking 550262 as yet unmatched pairs. 16323 records in RAM.
INFO	2026-06-08 08:28:16	MarkDuplicates	Read   185,000,000 records.  Elapsed time: 00:05:34s.  Time for last 1,000,000:    1s.  Last read position: chr6:43,369,055
INFO	2026-06-08 08:28:16	MarkDuplicates	Tracking 550017 as yet unmatched pairs. 16044 records in RAM.
INFO	2026-06-08 08:28:18	MarkDuplicates	Read   186,000,000 records.  Elapsed time: 00:05:36s.  Time for last 1,000,000:    1s.  Last read position: chr6:44,262,603
INFO	2026-06-08 08:28:18	MarkDuplicates	Tracking 547794 as yet unmatched pairs. 13818 records in RAM.
INFO	2026-06-08 08:28:20	MarkDuplicates	Read   187,000,000 records.  Elapsed time: 00:05:37s.  Time for last 1,000,000:    1s.  Last read position: chr6:56,459,155
INFO	2026-06-08 08:28:20	MarkDuplicates	Tracking 547891 as yet unmatched pairs. 13896 records in RAM.
INFO	2026-06-08 08:28:21	MarkDuplicates	Read   188,000,000 records.  Elapsed time: 00:05:39s.  Time for last 1,000,000:    1s.  Last read position: chr6:63,711,947
INFO	2026-06-08 08:28:21	MarkDuplicates	Tracking 546036 as yet unmatched pairs. 12031 records in RAM.
INFO	2026-06-08 08:28:23	MarkDuplicates	Read   189,000,000 records.  Elapsed time: 00:05:40s.  Time for last 1,000,000:    1s.  Last read position: chr6:75,284,596
INFO	2026-06-08 08:28:23	MarkDuplicates	Tracking 545233 as yet unmatched pairs. 11208 records in RAM.
INFO	2026-06-08 08:28:25	MarkDuplicates	Read   190,000,000 records.  Elapsed time: 00:05:42s.  Time for last 1,000,000:    1s.  Last read position: chr6:87,257,173
INFO	2026-06-08 08:28:25	MarkDuplicates	Tracking 544686 as yet unmatched pairs. 10649 records in RAM.
INFO	2026-06-08 08:28:26	MarkDuplicates	Read   191,000,000 records.  Elapsed time: 00:05:44s.  Time for last 1,000,000:    1s.  Last read position: chr6:99,400,551
INFO	2026-06-08 08:28:26	MarkDuplicates	Tracking 543808 as yet unmatched pairs. 9748 records in RAM.
INFO	2026-06-08 08:28:28	MarkDuplicates	Read   192,000,000 records.  Elapsed time: 00:05:45s.  Time for last 1,000,000:    1s.  Last read position: chr6:109,447,208
INFO	2026-06-08 08:28:28	MarkDuplicates	Tracking 543226 as yet unmatched pairs. 9151 records in RAM.
INFO	2026-06-08 08:28:30	MarkDuplicates	Read   193,000,000 records.  Elapsed time: 00:05:47s.  Time for last 1,000,000:    1s.  Last read position: chr6:116,278,759
INFO	2026-06-08 08:28:30	MarkDuplicates	Tracking 541520 as yet unmatched pairs. 7436 records in RAM.
INFO	2026-06-08 08:28:32	MarkDuplicates	Read   194,000,000 records.  Elapsed time: 00:05:49s.  Time for last 1,000,000:    2s.  Last read position: chr6:130,894,382
INFO	2026-06-08 08:28:32	MarkDuplicates	Tracking 540431 as yet unmatched pairs. 6333 records in RAM.
INFO	2026-06-08 08:28:34	MarkDuplicates	Read   195,000,000 records.  Elapsed time: 00:05:52s.  Time for last 1,000,000:    2s.  Last read position: chr6:138,953,481
INFO	2026-06-08 08:28:34	MarkDuplicates	Tracking 539373 as yet unmatched pairs. 5262 records in RAM.
INFO	2026-06-08 08:28:36	MarkDuplicates	Read   196,000,000 records.  Elapsed time: 00:05:54s.  Time for last 1,000,000:    2s.  Last read position: chr6:149,378,133
INFO	2026-06-08 08:28:36	MarkDuplicates	Tracking 538655 as yet unmatched pairs. 4526 records in RAM.
INFO	2026-06-08 08:28:38	MarkDuplicates	Read   197,000,000 records.  Elapsed time: 00:05:55s.  Time for last 1,000,000:    1s.  Last read position: chr6:154,857,999
INFO	2026-06-08 08:28:38	MarkDuplicates	Tracking 537298 as yet unmatched pairs. 3143 records in RAM.
INFO	2026-06-08 08:28:40	MarkDuplicates	Read   198,000,000 records.  Elapsed time: 00:05:57s.  Time for last 1,000,000:    1s.  Last read position: chr6:158,771,243
INFO	2026-06-08 08:28:40	MarkDuplicates	Tracking 536358 as yet unmatched pairs. 2178 records in RAM.
INFO	2026-06-08 08:28:41	MarkDuplicates	Read   199,000,000 records.  Elapsed time: 00:05:59s.  Time for last 1,000,000:    1s.  Last read position: chr6:166,372,323
INFO	2026-06-08 08:28:41	MarkDuplicates	Tracking 534984 as yet unmatched pairs. 789 records in RAM.
INFO	2026-06-08 08:28:43	MarkDuplicates	Read   200,000,000 records.  Elapsed time: 00:06:01s.  Time for last 1,000,000:    1s.  Last read position: chr7:1,010,039
INFO	2026-06-08 08:28:43	MarkDuplicates	Tracking 533849 as yet unmatched pairs. 33372 records in RAM.
INFO	2026-06-08 08:28:45	MarkDuplicates	Read   201,000,000 records.  Elapsed time: 00:06:02s.  Time for last 1,000,000:    1s.  Last read position: chr7:2,647,787
INFO	2026-06-08 08:28:45	MarkDuplicates	Tracking 533153 as yet unmatched pairs. 32655 records in RAM.
INFO	2026-06-08 08:28:47	MarkDuplicates	Read   202,000,000 records.  Elapsed time: 00:06:04s.  Time for last 1,000,000:    1s.  Last read position: chr7:5,371,259
INFO	2026-06-08 08:28:47	MarkDuplicates	Tracking 531561 as yet unmatched pairs. 31046 records in RAM.
INFO	2026-06-08 08:28:48	MarkDuplicates	Read   203,000,000 records.  Elapsed time: 00:06:06s.  Time for last 1,000,000:    1s.  Last read position: chr7:5,528,324
INFO	2026-06-08 08:28:48	MarkDuplicates	Tracking 538402 as yet unmatched pairs. 37880 records in RAM.
INFO	2026-06-08 08:28:50	MarkDuplicates	Read   204,000,000 records.  Elapsed time: 00:06:07s.  Time for last 1,000,000:    1s.  Last read position: chr7:6,035,764
INFO	2026-06-08 08:28:50	MarkDuplicates	Tracking 527982 as yet unmatched pairs. 27453 records in RAM.
INFO	2026-06-08 08:28:52	MarkDuplicates	Read   205,000,000 records.  Elapsed time: 00:06:09s.  Time for last 1,000,000:    1s.  Last read position: chr7:20,154,279
INFO	2026-06-08 08:28:52	MarkDuplicates	Tracking 526901 as yet unmatched pairs. 26363 records in RAM.
INFO	2026-06-08 08:28:53	MarkDuplicates	Read   206,000,000 records.  Elapsed time: 00:06:11s.  Time for last 1,000,000:    1s.  Last read position: chr7:26,208,475
INFO	2026-06-08 08:28:53	MarkDuplicates	Tracking 526743 as yet unmatched pairs. 26188 records in RAM.
INFO	2026-06-08 08:28:55	MarkDuplicates	Read   207,000,000 records.  Elapsed time: 00:06:12s.  Time for last 1,000,000:    1s.  Last read position: chr7:36,894,969
INFO	2026-06-08 08:28:55	MarkDuplicates	Tracking 525222 as yet unmatched pairs. 24638 records in RAM.
INFO	2026-06-08 08:28:56	MarkDuplicates	Read   208,000,000 records.  Elapsed time: 00:06:14s.  Time for last 1,000,000:    1s.  Last read position: chr7:44,074,279
INFO	2026-06-08 08:28:56	MarkDuplicates	Tracking 524037 as yet unmatched pairs. 23417 records in RAM.
INFO	2026-06-08 08:28:58	MarkDuplicates	Read   209,000,000 records.  Elapsed time: 00:06:16s.  Time for last 1,000,000:    1s.  Last read position: chr7:44,972,152
INFO	2026-06-08 08:28:58	MarkDuplicates	Tracking 523435 as yet unmatched pairs. 22811 records in RAM.
INFO	2026-06-08 08:29:00	MarkDuplicates	Read   210,000,000 records.  Elapsed time: 00:06:17s.  Time for last 1,000,000:    1s.  Last read position: chr7:65,873,376
INFO	2026-06-08 08:29:00	MarkDuplicates	Tracking 521935 as yet unmatched pairs. 21286 records in RAM.
INFO	2026-06-08 08:29:01	MarkDuplicates	Read   211,000,000 records.  Elapsed time: 00:06:19s.  Time for last 1,000,000:    1s.  Last read position: chr7:73,065,570
INFO	2026-06-08 08:29:01	MarkDuplicates	Tracking 520777 as yet unmatched pairs. 20111 records in RAM.
INFO	2026-06-08 08:29:03	MarkDuplicates	Read   212,000,000 records.  Elapsed time: 00:06:20s.  Time for last 1,000,000:    1s.  Last read position: chr7:74,223,768
INFO	2026-06-08 08:29:03	MarkDuplicates	Tracking 520528 as yet unmatched pairs. 19846 records in RAM.
INFO	2026-06-08 08:29:04	MarkDuplicates	Read   213,000,000 records.  Elapsed time: 00:06:22s.  Time for last 1,000,000:    1s.  Last read position: chr7:75,296,122
INFO	2026-06-08 08:29:04	MarkDuplicates	Tracking 519192 as yet unmatched pairs. 18506 records in RAM.
INFO	2026-06-08 08:29:06	MarkDuplicates	Read   214,000,000 records.  Elapsed time: 00:06:24s.  Time for last 1,000,000:    1s.  Last read position: chr7:76,515,063
INFO	2026-06-08 08:29:06	MarkDuplicates	Tracking 518245 as yet unmatched pairs. 17548 records in RAM.
INFO	2026-06-08 08:29:08	MarkDuplicates	Read   215,000,000 records.  Elapsed time: 00:06:26s.  Time for last 1,000,000:    1s.  Last read position: chr7:92,001,485
INFO	2026-06-08 08:29:08	MarkDuplicates	Tracking 517656 as yet unmatched pairs. 16941 records in RAM.
INFO	2026-06-08 08:29:11	MarkDuplicates	Read   216,000,000 records.  Elapsed time: 00:06:28s.  Time for last 1,000,000:    2s.  Last read position: chr7:96,277,298
INFO	2026-06-08 08:29:11	MarkDuplicates	Tracking 516941 as yet unmatched pairs. 16216 records in RAM.
INFO	2026-06-08 08:29:13	MarkDuplicates	Read   217,000,000 records.  Elapsed time: 00:06:30s.  Time for last 1,000,000:    1s.  Last read position: chr7:99,454,098
INFO	2026-06-08 08:29:13	MarkDuplicates	Tracking 515888 as yet unmatched pairs. 15138 records in RAM.
INFO	2026-06-08 08:29:14	MarkDuplicates	Read   218,000,000 records.  Elapsed time: 00:06:32s.  Time for last 1,000,000:    1s.  Last read position: chr7:100,353,716
INFO	2026-06-08 08:29:14	MarkDuplicates	Tracking 515437 as yet unmatched pairs. 14674 records in RAM.
INFO	2026-06-08 08:29:16	MarkDuplicates	Read   219,000,000 records.  Elapsed time: 00:06:33s.  Time for last 1,000,000:    1s.  Last read position: chr7:100,884,422
INFO	2026-06-08 08:29:16	MarkDuplicates	Tracking 512970 as yet unmatched pairs. 12193 records in RAM.
INFO	2026-06-08 08:29:17	MarkDuplicates	Read   220,000,000 records.  Elapsed time: 00:06:35s.  Time for last 1,000,000:    1s.  Last read position: chr7:102,540,041
INFO	2026-06-08 08:29:17	MarkDuplicates	Tracking 512551 as yet unmatched pairs. 11746 records in RAM.
INFO	2026-06-08 08:29:19	MarkDuplicates	Read   221,000,000 records.  Elapsed time: 00:06:36s.  Time for last 1,000,000:    1s.  Last read position: chr7:105,203,647
INFO	2026-06-08 08:29:19	MarkDuplicates	Tracking 511407 as yet unmatched pairs. 10593 records in RAM.
INFO	2026-06-08 08:29:20	MarkDuplicates	Read   222,000,000 records.  Elapsed time: 00:06:38s.  Time for last 1,000,000:    1s.  Last read position: chr7:120,415,121
INFO	2026-06-08 08:29:20	MarkDuplicates	Tracking 510512 as yet unmatched pairs. 9648 records in RAM.
INFO	2026-06-08 08:29:22	MarkDuplicates	Read   223,000,000 records.  Elapsed time: 00:06:39s.  Time for last 1,000,000:    1s.  Last read position: chr7:127,929,277
INFO	2026-06-08 08:29:22	MarkDuplicates	Tracking 512176 as yet unmatched pairs. 11304 records in RAM.
INFO	2026-06-08 08:29:24	MarkDuplicates	Read   224,000,000 records.  Elapsed time: 00:06:41s.  Time for last 1,000,000:    1s.  Last read position: chr7:130,166,378
INFO	2026-06-08 08:29:24	MarkDuplicates	Tracking 508846 as yet unmatched pairs. 7949 records in RAM.
INFO	2026-06-08 08:29:25	MarkDuplicates	Read   225,000,000 records.  Elapsed time: 00:06:43s.  Time for last 1,000,000:    1s.  Last read position: chr7:135,977,185
INFO	2026-06-08 08:29:25	MarkDuplicates	Tracking 507923 as yet unmatched pairs. 7013 records in RAM.
INFO	2026-06-08 08:29:27	MarkDuplicates	Read   226,000,000 records.  Elapsed time: 00:06:44s.  Time for last 1,000,000:    1s.  Last read position: chr7:139,569,099
INFO	2026-06-08 08:29:27	MarkDuplicates	Tracking 506662 as yet unmatched pairs. 5737 records in RAM.
INFO	2026-06-08 08:29:29	MarkDuplicates	Read   227,000,000 records.  Elapsed time: 00:06:46s.  Time for last 1,000,000:    1s.  Last read position: chr7:141,778,944
INFO	2026-06-08 08:29:29	MarkDuplicates	Tracking 505438 as yet unmatched pairs. 4508 records in RAM.
INFO	2026-06-08 08:29:30	MarkDuplicates	Read   228,000,000 records.  Elapsed time: 00:06:48s.  Time for last 1,000,000:    1s.  Last read position: chr7:149,474,694
INFO	2026-06-08 08:29:30	MarkDuplicates	Tracking 504664 as yet unmatched pairs. 3727 records in RAM.
INFO	2026-06-08 08:29:32	MarkDuplicates	Read   229,000,000 records.  Elapsed time: 00:06:49s.  Time for last 1,000,000:    1s.  Last read position: chr7:151,081,756
INFO	2026-06-08 08:29:32	MarkDuplicates	Tracking 503156 as yet unmatched pairs. 2208 records in RAM.
INFO	2026-06-08 08:29:34	MarkDuplicates	Read   230,000,000 records.  Elapsed time: 00:06:51s.  Time for last 1,000,000:    2s.  Last read position: chr7:155,711,439
INFO	2026-06-08 08:29:34	MarkDuplicates	Tracking 501807 as yet unmatched pairs. 854 records in RAM.
INFO	2026-06-08 08:29:36	MarkDuplicates	Read   231,000,000 records.  Elapsed time: 00:06:53s.  Time for last 1,000,000:    1s.  Last read position: chr8:8,891,746
INFO	2026-06-08 08:29:36	MarkDuplicates	Tracking 500799 as yet unmatched pairs. 21475 records in RAM.
INFO	2026-06-08 08:29:38	MarkDuplicates	Read   232,000,000 records.  Elapsed time: 00:06:55s.  Time for last 1,000,000:    1s.  Last read position: chr8:19,154,634
INFO	2026-06-08 08:29:38	MarkDuplicates	Tracking 499216 as yet unmatched pairs. 19860 records in RAM.
INFO	2026-06-08 08:29:40	MarkDuplicates	Read   233,000,000 records.  Elapsed time: 00:06:57s.  Time for last 1,000,000:    2s.  Last read position: chr8:23,028,348
INFO	2026-06-08 08:29:40	MarkDuplicates	Tracking 498653 as yet unmatched pairs. 19284 records in RAM.
INFO	2026-06-08 08:29:42	MarkDuplicates	Read   234,000,000 records.  Elapsed time: 00:06:59s.  Time for last 1,000,000:    1s.  Last read position: chr8:29,113,426
INFO	2026-06-08 08:29:42	MarkDuplicates	Tracking 497112 as yet unmatched pairs. 17717 records in RAM.
INFO	2026-06-08 08:29:43	MarkDuplicates	Read   235,000,000 records.  Elapsed time: 00:07:01s.  Time for last 1,000,000:    1s.  Last read position: chr8:38,329,839
INFO	2026-06-08 08:29:43	MarkDuplicates	Tracking 496980 as yet unmatched pairs. 17576 records in RAM.
INFO	2026-06-08 08:29:45	MarkDuplicates	Read   236,000,000 records.  Elapsed time: 00:07:02s.  Time for last 1,000,000:    1s.  Last read position: chr8:38,846,710
INFO	2026-06-08 08:29:45	MarkDuplicates	Tracking 498756 as yet unmatched pairs. 19343 records in RAM.
INFO	2026-06-08 08:29:47	MarkDuplicates	Read   237,000,000 records.  Elapsed time: 00:07:04s.  Time for last 1,000,000:    1s.  Last read position: chr8:47,863,533
INFO	2026-06-08 08:29:47	MarkDuplicates	Tracking 494575 as yet unmatched pairs. 15153 records in RAM.
INFO	2026-06-08 08:29:48	MarkDuplicates	Read   238,000,000 records.  Elapsed time: 00:07:06s.  Time for last 1,000,000:    1s.  Last read position: chr8:60,741,512
INFO	2026-06-08 08:29:48	MarkDuplicates	Tracking 493651 as yet unmatched pairs. 14208 records in RAM.
INFO	2026-06-08 08:29:50	MarkDuplicates	Read   239,000,000 records.  Elapsed time: 00:07:08s.  Time for last 1,000,000:    1s.  Last read position: chr8:70,141,201
INFO	2026-06-08 08:29:50	MarkDuplicates	Tracking 494162 as yet unmatched pairs. 14669 records in RAM.
INFO	2026-06-08 08:29:52	MarkDuplicates	Read   240,000,000 records.  Elapsed time: 00:07:09s.  Time for last 1,000,000:    1s.  Last read position: chr8:80,099,814
INFO	2026-06-08 08:29:52	MarkDuplicates	Tracking 491532 as yet unmatched pairs. 12020 records in RAM.
INFO	2026-06-08 08:29:53	MarkDuplicates	Read   241,000,000 records.  Elapsed time: 00:07:11s.  Time for last 1,000,000:    1s.  Last read position: chr8:97,644,704
INFO	2026-06-08 08:29:53	MarkDuplicates	Tracking 492109 as yet unmatched pairs. 12587 records in RAM.
INFO	2026-06-08 08:29:55	MarkDuplicates	Read   242,000,000 records.  Elapsed time: 00:07:12s.  Time for last 1,000,000:    1s.  Last read position: chr8:100,706,927
INFO	2026-06-08 08:29:55	MarkDuplicates	Tracking 491469 as yet unmatched pairs. 11939 records in RAM.
INFO	2026-06-08 08:29:57	MarkDuplicates	Read   243,000,000 records.  Elapsed time: 00:07:14s.  Time for last 1,000,000:    1s.  Last read position: chr8:102,345,506
INFO	2026-06-08 08:29:57	MarkDuplicates	Tracking 489567 as yet unmatched pairs. 10026 records in RAM.
INFO	2026-06-08 08:29:58	MarkDuplicates	Read   244,000,000 records.  Elapsed time: 00:07:16s.  Time for last 1,000,000:    1s.  Last read position: chr8:120,538,870
INFO	2026-06-08 08:29:58	MarkDuplicates	Tracking 488177 as yet unmatched pairs. 8613 records in RAM.
INFO	2026-06-08 08:30:00	MarkDuplicates	Read   245,000,000 records.  Elapsed time: 00:07:17s.  Time for last 1,000,000:    1s.  Last read position: chr8:127,740,707
INFO	2026-06-08 08:30:00	MarkDuplicates	Tracking 487447 as yet unmatched pairs. 7863 records in RAM.
INFO	2026-06-08 08:30:02	MarkDuplicates	Read   246,000,000 records.  Elapsed time: 00:07:19s.  Time for last 1,000,000:    1s.  Last read position: chr8:141,422,267
INFO	2026-06-08 08:30:02	MarkDuplicates	Tracking 486339 as yet unmatched pairs. 6712 records in RAM.
INFO	2026-06-08 08:30:03	MarkDuplicates	Read   247,000,000 records.  Elapsed time: 00:07:21s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,803,402
INFO	2026-06-08 08:30:03	MarkDuplicates	Tracking 484962 as yet unmatched pairs. 5324 records in RAM.
INFO	2026-06-08 08:30:05	MarkDuplicates	Read   248,000,000 records.  Elapsed time: 00:07:23s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,985,723
INFO	2026-06-08 08:30:05	MarkDuplicates	Tracking 483702 as yet unmatched pairs. 4063 records in RAM.
INFO	2026-06-08 08:30:08	MarkDuplicates	Read   249,000,000 records.  Elapsed time: 00:07:25s.  Time for last 1,000,000:    2s.  Last read position: chr8:144,397,976
INFO	2026-06-08 08:30:08	MarkDuplicates	Tracking 481222 as yet unmatched pairs. 1574 records in RAM.
INFO	2026-06-08 08:31:06	MarkDuplicates	Read   250,000,000 records.  Elapsed time: 00:08:24s.  Time for last 1,000,000:   58s.  Last read position: chr9:396,862
INFO	2026-06-08 08:31:06	MarkDuplicates	Tracking 479758 as yet unmatched pairs. 27096 records in RAM.
INFO	2026-06-08 08:31:08	MarkDuplicates	Read   251,000,000 records.  Elapsed time: 00:08:26s.  Time for last 1,000,000:    1s.  Last read position: chr9:5,763,522
INFO	2026-06-08 08:31:08	MarkDuplicates	Tracking 479522 as yet unmatched pairs. 26841 records in RAM.
INFO	2026-06-08 08:31:10	MarkDuplicates	Read   252,000,000 records.  Elapsed time: 00:08:27s.  Time for last 1,000,000:    1s.  Last read position: chr9:9,442,127
INFO	2026-06-08 08:31:10	MarkDuplicates	Tracking 481728 as yet unmatched pairs. 29014 records in RAM.
INFO	2026-06-08 08:31:11	MarkDuplicates	Read   253,000,000 records.  Elapsed time: 00:08:29s.  Time for last 1,000,000:    1s.  Last read position: chr9:19,303,118
INFO	2026-06-08 08:31:11	MarkDuplicates	Tracking 476293 as yet unmatched pairs. 23573 records in RAM.
INFO	2026-06-08 08:31:13	MarkDuplicates	Read   254,000,000 records.  Elapsed time: 00:08:30s.  Time for last 1,000,000:    1s.  Last read position: chr9:33,166,837
INFO	2026-06-08 08:31:13	MarkDuplicates	Tracking 478174 as yet unmatched pairs. 25430 records in RAM.
INFO	2026-06-08 08:31:15	MarkDuplicates	Read   255,000,000 records.  Elapsed time: 00:08:32s.  Time for last 1,000,000:    1s.  Last read position: chr9:35,101,941
INFO	2026-06-08 08:31:15	MarkDuplicates	Tracking 474695 as yet unmatched pairs. 21946 records in RAM.
INFO	2026-06-08 08:31:16	MarkDuplicates	Read   256,000,000 records.  Elapsed time: 00:08:34s.  Time for last 1,000,000:    1s.  Last read position: chr9:36,834,310
INFO	2026-06-08 08:31:16	MarkDuplicates	Tracking 473070 as yet unmatched pairs. 20283 records in RAM.
INFO	2026-06-08 08:31:18	MarkDuplicates	Read   257,000,000 records.  Elapsed time: 00:08:35s.  Time for last 1,000,000:    1s.  Last read position: chr9:37,015,097
INFO	2026-06-08 08:31:18	MarkDuplicates	Tracking 473247 as yet unmatched pairs. 20452 records in RAM.
INFO	2026-06-08 08:31:19	MarkDuplicates	Read   258,000,000 records.  Elapsed time: 00:08:37s.  Time for last 1,000,000:    1s.  Last read position: chr9:68,292,970
INFO	2026-06-08 08:31:19	MarkDuplicates	Tracking 471222 as yet unmatched pairs. 18409 records in RAM.
INFO	2026-06-08 08:31:21	MarkDuplicates	Read   259,000,000 records.  Elapsed time: 00:08:39s.  Time for last 1,000,000:    1s.  Last read position: chr9:83,977,735
INFO	2026-06-08 08:31:21	MarkDuplicates	Tracking 470904 as yet unmatched pairs. 18082 records in RAM.
INFO	2026-06-08 08:31:23	MarkDuplicates	Read   260,000,000 records.  Elapsed time: 00:08:41s.  Time for last 1,000,000:    2s.  Last read position: chr9:92,229,013
INFO	2026-06-08 08:31:23	MarkDuplicates	Tracking 470480 as yet unmatched pairs. 17653 records in RAM.
INFO	2026-06-08 08:31:25	MarkDuplicates	Read   261,000,000 records.  Elapsed time: 00:08:43s.  Time for last 1,000,000:    1s.  Last read position: chr9:95,966,624
INFO	2026-06-08 08:31:25	MarkDuplicates	Tracking 468537 as yet unmatched pairs. 15706 records in RAM.
INFO	2026-06-08 08:31:27	MarkDuplicates	Read   262,000,000 records.  Elapsed time: 00:08:44s.  Time for last 1,000,000:    1s.  Last read position: chr9:107,306,524
INFO	2026-06-08 08:31:27	MarkDuplicates	Tracking 468258 as yet unmatched pairs. 15423 records in RAM.
INFO	2026-06-08 08:31:28	MarkDuplicates	Read   263,000,000 records.  Elapsed time: 00:08:46s.  Time for last 1,000,000:    1s.  Last read position: chr9:113,499,102
INFO	2026-06-08 08:31:28	MarkDuplicates	Tracking 466364 as yet unmatched pairs. 13526 records in RAM.
INFO	2026-06-08 08:31:30	MarkDuplicates	Read   264,000,000 records.  Elapsed time: 00:08:47s.  Time for last 1,000,000:    1s.  Last read position: chr9:121,088,381
INFO	2026-06-08 08:31:30	MarkDuplicates	Tracking 466453 as yet unmatched pairs. 13590 records in RAM.
INFO	2026-06-08 08:31:32	MarkDuplicates	Read   265,000,000 records.  Elapsed time: 00:08:49s.  Time for last 1,000,000:    1s.  Last read position: chr9:124,262,091
INFO	2026-06-08 08:31:32	MarkDuplicates	Tracking 465379 as yet unmatched pairs. 12496 records in RAM.
INFO	2026-06-08 08:31:33	MarkDuplicates	Read   266,000,000 records.  Elapsed time: 00:08:51s.  Time for last 1,000,000:    1s.  Last read position: chr9:127,487,690
INFO	2026-06-08 08:31:33	MarkDuplicates	Tracking 463779 as yet unmatched pairs. 10890 records in RAM.
INFO	2026-06-08 08:31:35	MarkDuplicates	Read   267,000,000 records.  Elapsed time: 00:08:52s.  Time for last 1,000,000:    1s.  Last read position: chr9:128,523,720
INFO	2026-06-08 08:31:35	MarkDuplicates	Tracking 462376 as yet unmatched pairs. 9468 records in RAM.
INFO	2026-06-08 08:31:37	MarkDuplicates	Read   268,000,000 records.  Elapsed time: 00:08:54s.  Time for last 1,000,000:    1s.  Last read position: chr9:129,829,453
INFO	2026-06-08 08:31:37	MarkDuplicates	Tracking 461227 as yet unmatched pairs. 8309 records in RAM.
INFO	2026-06-08 08:31:38	MarkDuplicates	Read   269,000,000 records.  Elapsed time: 00:08:56s.  Time for last 1,000,000:    1s.  Last read position: chr9:131,144,744
INFO	2026-06-08 08:31:38	MarkDuplicates	Tracking 460286 as yet unmatched pairs. 7358 records in RAM.
INFO	2026-06-08 08:31:40	MarkDuplicates	Read   270,000,000 records.  Elapsed time: 00:08:58s.  Time for last 1,000,000:    1s.  Last read position: chr9:132,327,332
INFO	2026-06-08 08:31:40	MarkDuplicates	Tracking 459458 as yet unmatched pairs. 6515 records in RAM.
INFO	2026-06-08 08:31:42	MarkDuplicates	Read   271,000,000 records.  Elapsed time: 00:08:59s.  Time for last 1,000,000:    1s.  Last read position: chr9:133,777,404
INFO	2026-06-08 08:31:42	MarkDuplicates	Tracking 458552 as yet unmatched pairs. 5597 records in RAM.
INFO	2026-06-08 08:31:43	MarkDuplicates	Read   272,000,000 records.  Elapsed time: 00:09:01s.  Time for last 1,000,000:    1s.  Last read position: chr9:136,474,424
INFO	2026-06-08 08:31:43	MarkDuplicates	Tracking 457436 as yet unmatched pairs. 4476 records in RAM.
INFO	2026-06-08 08:31:45	MarkDuplicates	Read   273,000,000 records.  Elapsed time: 00:09:03s.  Time for last 1,000,000:    2s.  Last read position: chr9:136,859,727
INFO	2026-06-08 08:31:45	MarkDuplicates	Tracking 455397 as yet unmatched pairs. 2421 records in RAM.
INFO	2026-06-08 08:31:48	MarkDuplicates	Read   274,000,000 records.  Elapsed time: 00:09:05s.  Time for last 1,000,000:    2s.  Last read position: chr9:137,457,543
INFO	2026-06-08 08:31:48	MarkDuplicates	Tracking 454279 as yet unmatched pairs. 1283 records in RAM.
INFO	2026-06-08 08:31:50	MarkDuplicates	Read   275,000,000 records.  Elapsed time: 00:09:07s.  Time for last 1,000,000:    2s.  Last read position: chr10:5,747,723
INFO	2026-06-08 08:31:50	MarkDuplicates	Tracking 452625 as yet unmatched pairs. 18868 records in RAM.
INFO	2026-06-08 08:31:52	MarkDuplicates	Read   276,000,000 records.  Elapsed time: 00:09:09s.  Time for last 1,000,000:    1s.  Last read position: chr10:12,349,826
INFO	2026-06-08 08:31:52	MarkDuplicates	Tracking 451678 as yet unmatched pairs. 17915 records in RAM.
INFO	2026-06-08 08:31:53	MarkDuplicates	Read   277,000,000 records.  Elapsed time: 00:09:11s.  Time for last 1,000,000:    1s.  Last read position: chr10:22,573,385
INFO	2026-06-08 08:31:53	MarkDuplicates	Tracking 450954 as yet unmatched pairs. 17180 records in RAM.
INFO	2026-06-08 08:31:55	MarkDuplicates	Read   278,000,000 records.  Elapsed time: 00:09:12s.  Time for last 1,000,000:    1s.  Last read position: chr10:32,017,149
INFO	2026-06-08 08:31:55	MarkDuplicates	Tracking 450643 as yet unmatched pairs. 16857 records in RAM.
INFO	2026-06-08 08:31:57	MarkDuplicates	Read   279,000,000 records.  Elapsed time: 00:09:14s.  Time for last 1,000,000:    1s.  Last read position: chr10:43,387,425
INFO	2026-06-08 08:31:57	MarkDuplicates	Tracking 449255 as yet unmatched pairs. 15440 records in RAM.
INFO	2026-06-08 08:31:58	MarkDuplicates	Read   280,000,000 records.  Elapsed time: 00:09:16s.  Time for last 1,000,000:    1s.  Last read position: chr10:48,709,716
INFO	2026-06-08 08:31:58	MarkDuplicates	Tracking 448688 as yet unmatched pairs. 14869 records in RAM.
INFO	2026-06-08 08:32:00	MarkDuplicates	Read   281,000,000 records.  Elapsed time: 00:09:17s.  Time for last 1,000,000:    1s.  Last read position: chr10:58,387,040
INFO	2026-06-08 08:32:00	MarkDuplicates	Tracking 447348 as yet unmatched pairs. 13524 records in RAM.
INFO	2026-06-08 08:32:01	MarkDuplicates	Read   282,000,000 records.  Elapsed time: 00:09:19s.  Time for last 1,000,000:    1s.  Last read position: chr10:68,973,636
INFO	2026-06-08 08:32:01	MarkDuplicates	Tracking 446504 as yet unmatched pairs. 12665 records in RAM.
INFO	2026-06-08 08:32:03	MarkDuplicates	Read   283,000,000 records.  Elapsed time: 00:09:20s.  Time for last 1,000,000:    1s.  Last read position: chr10:73,495,812
INFO	2026-06-08 08:32:03	MarkDuplicates	Tracking 445420 as yet unmatched pairs. 11566 records in RAM.
INFO	2026-06-08 08:32:05	MarkDuplicates	Read   284,000,000 records.  Elapsed time: 00:09:22s.  Time for last 1,000,000:    1s.  Last read position: chr10:77,977,580
INFO	2026-06-08 08:32:05	MarkDuplicates	Tracking 444338 as yet unmatched pairs. 10449 records in RAM.
INFO	2026-06-08 08:32:06	MarkDuplicates	Read   285,000,000 records.  Elapsed time: 00:09:24s.  Time for last 1,000,000:    1s.  Last read position: chr10:87,053,342
INFO	2026-06-08 08:32:06	MarkDuplicates	Tracking 444318 as yet unmatched pairs. 10421 records in RAM.
INFO	2026-06-08 08:32:08	MarkDuplicates	Read   286,000,000 records.  Elapsed time: 00:09:25s.  Time for last 1,000,000:    1s.  Last read position: chr10:89,339,377
INFO	2026-06-08 08:32:08	MarkDuplicates	Tracking 442933 as yet unmatched pairs. 9027 records in RAM.
INFO	2026-06-08 08:32:09	MarkDuplicates	Read   287,000,000 records.  Elapsed time: 00:09:27s.  Time for last 1,000,000:    1s.  Last read position: chr10:95,839,705
INFO	2026-06-08 08:32:09	MarkDuplicates	Tracking 442069 as yet unmatched pairs. 8150 records in RAM.
INFO	2026-06-08 08:32:11	MarkDuplicates	Read   288,000,000 records.  Elapsed time: 00:09:29s.  Time for last 1,000,000:    1s.  Last read position: chr10:96,833,055
INFO	2026-06-08 08:32:11	MarkDuplicates	Tracking 440702 as yet unmatched pairs. 6774 records in RAM.
INFO	2026-06-08 08:32:13	MarkDuplicates	Read   289,000,000 records.  Elapsed time: 00:09:31s.  Time for last 1,000,000:    2s.  Last read position: chr10:100,536,034
INFO	2026-06-08 08:32:13	MarkDuplicates	Tracking 439759 as yet unmatched pairs. 5817 records in RAM.
INFO	2026-06-08 08:32:15	MarkDuplicates	Read   290,000,000 records.  Elapsed time: 00:09:33s.  Time for last 1,000,000:    2s.  Last read position: chr10:102,395,888
INFO	2026-06-08 08:32:15	MarkDuplicates	Tracking 439359 as yet unmatched pairs. 5413 records in RAM.
INFO	2026-06-08 08:32:17	MarkDuplicates	Read   291,000,000 records.  Elapsed time: 00:09:34s.  Time for last 1,000,000:    1s.  Last read position: chr10:110,498,259
INFO	2026-06-08 08:32:17	MarkDuplicates	Tracking 437511 as yet unmatched pairs. 3531 records in RAM.
INFO	2026-06-08 08:32:19	MarkDuplicates	Read   292,000,000 records.  Elapsed time: 00:09:36s.  Time for last 1,000,000:    1s.  Last read position: chr10:119,160,920
INFO	2026-06-08 08:32:19	MarkDuplicates	Tracking 436324 as yet unmatched pairs. 2332 records in RAM.
INFO	2026-06-08 08:32:20	MarkDuplicates	Read   293,000,000 records.  Elapsed time: 00:09:38s.  Time for last 1,000,000:    1s.  Last read position: chr10:128,106,245
INFO	2026-06-08 08:32:20	MarkDuplicates	Tracking 435383 as yet unmatched pairs. 1383 records in RAM.
INFO	2026-06-08 08:32:22	MarkDuplicates	Read   294,000,000 records.  Elapsed time: 00:09:40s.  Time for last 1,000,000:    1s.  Last read position: chr11:218,997
INFO	2026-06-08 08:32:22	MarkDuplicates	Tracking 434247 as yet unmatched pairs. 38024 records in RAM.
INFO	2026-06-08 08:32:24	MarkDuplicates	Read   295,000,000 records.  Elapsed time: 00:09:41s.  Time for last 1,000,000:    1s.  Last read position: chr11:607,604
INFO	2026-06-08 08:32:24	MarkDuplicates	Tracking 433102 as yet unmatched pairs. 36874 records in RAM.
INFO	2026-06-08 08:32:26	MarkDuplicates	Read   296,000,000 records.  Elapsed time: 00:09:43s.  Time for last 1,000,000:    1s.  Last read position: chr11:1,226,694
INFO	2026-06-08 08:32:26	MarkDuplicates	Tracking 431051 as yet unmatched pairs. 34816 records in RAM.
INFO	2026-06-08 08:32:27	MarkDuplicates	Read   297,000,000 records.  Elapsed time: 00:09:45s.  Time for last 1,000,000:    1s.  Last read position: chr11:3,856,319
INFO	2026-06-08 08:32:27	MarkDuplicates	Tracking 430614 as yet unmatched pairs. 34368 records in RAM.
INFO	2026-06-08 08:32:29	MarkDuplicates	Read   298,000,000 records.  Elapsed time: 00:09:46s.  Time for last 1,000,000:    1s.  Last read position: chr11:7,509,942
INFO	2026-06-08 08:32:29	MarkDuplicates	Tracking 428481 as yet unmatched pairs. 32206 records in RAM.
INFO	2026-06-08 08:32:30	MarkDuplicates	Read   299,000,000 records.  Elapsed time: 00:09:48s.  Time for last 1,000,000:    1s.  Last read position: chr11:11,352,885
INFO	2026-06-08 08:32:30	MarkDuplicates	Tracking 427535 as yet unmatched pairs. 31252 records in RAM.
INFO	2026-06-08 08:32:32	MarkDuplicates	Read   300,000,000 records.  Elapsed time: 00:09:50s.  Time for last 1,000,000:    1s.  Last read position: chr11:22,236,247
INFO	2026-06-08 08:32:32	MarkDuplicates	Tracking 426741 as yet unmatched pairs. 30434 records in RAM.
INFO	2026-06-08 08:32:34	MarkDuplicates	Read   301,000,000 records.  Elapsed time: 00:09:51s.  Time for last 1,000,000:    1s.  Last read position: chr11:35,229,177
INFO	2026-06-08 08:32:34	MarkDuplicates	Tracking 426620 as yet unmatched pairs. 30292 records in RAM.
INFO	2026-06-08 08:32:35	MarkDuplicates	Read   302,000,000 records.  Elapsed time: 00:09:53s.  Time for last 1,000,000:    1s.  Last read position: chr11:46,659,408
INFO	2026-06-08 08:32:35	MarkDuplicates	Tracking 425461 as yet unmatched pairs. 29110 records in RAM.
INFO	2026-06-08 08:32:37	MarkDuplicates	Read   303,000,000 records.  Elapsed time: 00:09:55s.  Time for last 1,000,000:    1s.  Last read position: chr11:56,690,337
INFO	2026-06-08 08:32:37	MarkDuplicates	Tracking 423789 as yet unmatched pairs. 27432 records in RAM.
INFO	2026-06-08 08:32:39	MarkDuplicates	Read   304,000,000 records.  Elapsed time: 00:09:56s.  Time for last 1,000,000:    1s.  Last read position: chr11:59,659,456
INFO	2026-06-08 08:32:39	MarkDuplicates	Tracking 423060 as yet unmatched pairs. 26656 records in RAM.
INFO	2026-06-08 08:32:41	MarkDuplicates	Read   305,000,000 records.  Elapsed time: 00:09:58s.  Time for last 1,000,000:    1s.  Last read position: chr11:61,300,102
INFO	2026-06-08 08:32:41	MarkDuplicates	Tracking 422033 as yet unmatched pairs. 25615 records in RAM.
INFO	2026-06-08 08:32:43	MarkDuplicates	Read   306,000,000 records.  Elapsed time: 00:10:00s.  Time for last 1,000,000:    2s.  Last read position: chr11:62,533,700
INFO	2026-06-08 08:32:43	MarkDuplicates	Tracking 420884 as yet unmatched pairs. 24406 records in RAM.
INFO	2026-06-08 08:32:45	MarkDuplicates	Read   307,000,000 records.  Elapsed time: 00:10:02s.  Time for last 1,000,000:    2s.  Last read position: chr11:62,787,259
INFO	2026-06-08 08:32:45	MarkDuplicates	Tracking 419626 as yet unmatched pairs. 23139 records in RAM.
INFO	2026-06-08 08:32:47	MarkDuplicates	Read   308,000,000 records.  Elapsed time: 00:10:04s.  Time for last 1,000,000:    1s.  Last read position: chr11:64,231,786
INFO	2026-06-08 08:32:47	MarkDuplicates	Tracking 418704 as yet unmatched pairs. 22209 records in RAM.
INFO	2026-06-08 08:32:48	MarkDuplicates	Read   309,000,000 records.  Elapsed time: 00:10:06s.  Time for last 1,000,000:    1s.  Last read position: chr11:64,769,585
INFO	2026-06-08 08:32:48	MarkDuplicates	Tracking 417257 as yet unmatched pairs. 20759 records in RAM.
INFO	2026-06-08 08:32:50	MarkDuplicates	Read   310,000,000 records.  Elapsed time: 00:10:07s.  Time for last 1,000,000:    1s.  Last read position: chr11:65,128,437
INFO	2026-06-08 08:32:50	MarkDuplicates	Tracking 416076 as yet unmatched pairs. 19577 records in RAM.
INFO	2026-06-08 08:32:52	MarkDuplicates	Read   311,000,000 records.  Elapsed time: 00:10:09s.  Time for last 1,000,000:    1s.  Last read position: chr11:65,501,509
INFO	2026-06-08 08:32:52	MarkDuplicates	Tracking 414942 as yet unmatched pairs. 18409 records in RAM.
INFO	2026-06-08 08:32:53	MarkDuplicates	Read   312,000,000 records.  Elapsed time: 00:10:11s.  Time for last 1,000,000:    1s.  Last read position: chr11:65,616,350
INFO	2026-06-08 08:32:53	MarkDuplicates	Tracking 413459 as yet unmatched pairs. 16919 records in RAM.
INFO	2026-06-08 08:32:55	MarkDuplicates	Read   313,000,000 records.  Elapsed time: 00:10:12s.  Time for last 1,000,000:    1s.  Last read position: chr11:65,885,537
INFO	2026-06-08 08:32:55	MarkDuplicates	Tracking 412206 as yet unmatched pairs. 15654 records in RAM.
INFO	2026-06-08 08:32:57	MarkDuplicates	Read   314,000,000 records.  Elapsed time: 00:10:14s.  Time for last 1,000,000:    1s.  Last read position: chr11:66,625,062
INFO	2026-06-08 08:32:57	MarkDuplicates	Tracking 411103 as yet unmatched pairs. 14549 records in RAM.
INFO	2026-06-08 08:32:58	MarkDuplicates	Read   315,000,000 records.  Elapsed time: 00:10:16s.  Time for last 1,000,000:    1s.  Last read position: chr11:67,434,673
INFO	2026-06-08 08:32:58	MarkDuplicates	Tracking 409110 as yet unmatched pairs. 12553 records in RAM.
INFO	2026-06-08 08:33:00	MarkDuplicates	Read   316,000,000 records.  Elapsed time: 00:10:17s.  Time for last 1,000,000:    1s.  Last read position: chr11:68,044,228
INFO	2026-06-08 08:33:00	MarkDuplicates	Tracking 408781 as yet unmatched pairs. 12221 records in RAM.
INFO	2026-06-08 08:33:02	MarkDuplicates	Read   317,000,000 records.  Elapsed time: 00:10:19s.  Time for last 1,000,000:    1s.  Last read position: chr11:71,989,394
INFO	2026-06-08 08:33:02	MarkDuplicates	Tracking 406083 as yet unmatched pairs. 9501 records in RAM.
INFO	2026-06-08 08:33:03	MarkDuplicates	Read   318,000,000 records.  Elapsed time: 00:10:21s.  Time for last 1,000,000:    1s.  Last read position: chr11:72,781,011
INFO	2026-06-08 08:33:03	MarkDuplicates	Tracking 404781 as yet unmatched pairs. 8191 records in RAM.
INFO	2026-06-08 08:33:05	MarkDuplicates	Read   319,000,000 records.  Elapsed time: 00:10:22s.  Time for last 1,000,000:    1s.  Last read position: chr11:75,404,693
INFO	2026-06-08 08:33:05	MarkDuplicates	Tracking 404753 as yet unmatched pairs. 8153 records in RAM.
INFO	2026-06-08 08:33:07	MarkDuplicates	Read   320,000,000 records.  Elapsed time: 00:10:25s.  Time for last 1,000,000:    2s.  Last read position: chr11:85,971,782
INFO	2026-06-08 08:33:07	MarkDuplicates	Tracking 402764 as yet unmatched pairs. 6158 records in RAM.
INFO	2026-06-08 08:33:09	MarkDuplicates	Read   321,000,000 records.  Elapsed time: 00:10:27s.  Time for last 1,000,000:    2s.  Last read position: chr11:96,341,529
INFO	2026-06-08 08:33:09	MarkDuplicates	Tracking 402714 as yet unmatched pairs. 6083 records in RAM.
INFO	2026-06-08 08:33:11	MarkDuplicates	Read   322,000,000 records.  Elapsed time: 00:10:28s.  Time for last 1,000,000:    1s.  Last read position: chr11:111,031,024
INFO	2026-06-08 08:33:11	MarkDuplicates	Tracking 400685 as yet unmatched pairs. 4037 records in RAM.
INFO	2026-06-08 08:33:13	MarkDuplicates	Read   323,000,000 records.  Elapsed time: 00:10:30s.  Time for last 1,000,000:    1s.  Last read position: chr11:117,918,630
INFO	2026-06-08 08:33:13	MarkDuplicates	Tracking 399649 as yet unmatched pairs. 2993 records in RAM.
INFO	2026-06-08 08:33:14	MarkDuplicates	Read   324,000,000 records.  Elapsed time: 00:10:32s.  Time for last 1,000,000:    1s.  Last read position: chr11:119,055,814
INFO	2026-06-08 08:33:14	MarkDuplicates	Tracking 399154 as yet unmatched pairs. 2486 records in RAM.
INFO	2026-06-08 08:33:16	MarkDuplicates	Read   325,000,000 records.  Elapsed time: 00:10:33s.  Time for last 1,000,000:    1s.  Last read position: chr11:123,729,125
INFO	2026-06-08 08:33:16	MarkDuplicates	Tracking 397995 as yet unmatched pairs. 1301 records in RAM.
INFO	2026-06-08 08:33:17	MarkDuplicates	Read   326,000,000 records.  Elapsed time: 00:10:35s.  Time for last 1,000,000:    1s.  Last read position: chr11:130,915,418
INFO	2026-06-08 08:33:17	MarkDuplicates	Tracking 397390 as yet unmatched pairs. 690 records in RAM.
INFO	2026-06-08 08:33:19	MarkDuplicates	Read   327,000,000 records.  Elapsed time: 00:10:37s.  Time for last 1,000,000:    1s.  Last read position: chr12:2,803,149
INFO	2026-06-08 08:33:19	MarkDuplicates	Tracking 396077 as yet unmatched pairs. 33073 records in RAM.
INFO	2026-06-08 08:33:21	MarkDuplicates	Read   328,000,000 records.  Elapsed time: 00:10:38s.  Time for last 1,000,000:    1s.  Last read position: chr12:6,560,434
INFO	2026-06-08 08:33:21	MarkDuplicates	Tracking 394966 as yet unmatched pairs. 31957 records in RAM.
INFO	2026-06-08 08:33:22	MarkDuplicates	Read   329,000,000 records.  Elapsed time: 00:10:40s.  Time for last 1,000,000:    1s.  Last read position: chr12:6,951,420
INFO	2026-06-08 08:33:22	MarkDuplicates	Tracking 395014 as yet unmatched pairs. 32001 records in RAM.
INFO	2026-06-08 08:33:24	MarkDuplicates	Read   330,000,000 records.  Elapsed time: 00:10:41s.  Time for last 1,000,000:    1s.  Last read position: chr12:9,695,311
INFO	2026-06-08 08:33:24	MarkDuplicates	Tracking 393896 as yet unmatched pairs. 30872 records in RAM.
INFO	2026-06-08 08:33:26	MarkDuplicates	Read   331,000,000 records.  Elapsed time: 00:10:43s.  Time for last 1,000,000:    1s.  Last read position: chr12:12,124,591
INFO	2026-06-08 08:33:26	MarkDuplicates	Tracking 391870 as yet unmatched pairs. 28837 records in RAM.
INFO	2026-06-08 08:33:27	MarkDuplicates	Read   332,000,000 records.  Elapsed time: 00:10:45s.  Time for last 1,000,000:    1s.  Last read position: chr12:22,666,018
INFO	2026-06-08 08:33:27	MarkDuplicates	Tracking 391182 as yet unmatched pairs. 28146 records in RAM.
INFO	2026-06-08 08:33:29	MarkDuplicates	Read   333,000,000 records.  Elapsed time: 00:10:46s.  Time for last 1,000,000:    1s.  Last read position: chr12:26,832,682
INFO	2026-06-08 08:33:29	MarkDuplicates	Tracking 390684 as yet unmatched pairs. 27641 records in RAM.
INFO	2026-06-08 08:33:31	MarkDuplicates	Read   334,000,000 records.  Elapsed time: 00:10:49s.  Time for last 1,000,000:    2s.  Last read position: chr12:39,370,221
INFO	2026-06-08 08:33:31	MarkDuplicates	Tracking 389555 as yet unmatched pairs. 26501 records in RAM.
INFO	2026-06-08 08:33:33	MarkDuplicates	Read   335,000,000 records.  Elapsed time: 00:10:50s.  Time for last 1,000,000:    1s.  Last read position: chr12:46,771,291
INFO	2026-06-08 08:33:33	MarkDuplicates	Tracking 388487 as yet unmatched pairs. 25426 records in RAM.
INFO	2026-06-08 08:33:35	MarkDuplicates	Read   336,000,000 records.  Elapsed time: 00:10:52s.  Time for last 1,000,000:    2s.  Last read position: chr12:49,044,825
INFO	2026-06-08 08:33:35	MarkDuplicates	Tracking 387898 as yet unmatched pairs. 24835 records in RAM.
INFO	2026-06-08 08:33:37	MarkDuplicates	Read   337,000,000 records.  Elapsed time: 00:10:54s.  Time for last 1,000,000:    1s.  Last read position: chr12:49,762,915
INFO	2026-06-08 08:33:37	MarkDuplicates	Tracking 386977 as yet unmatched pairs. 23906 records in RAM.
INFO	2026-06-08 08:33:39	MarkDuplicates	Read   338,000,000 records.  Elapsed time: 00:10:56s.  Time for last 1,000,000:    1s.  Last read position: chr12:53,192,768
INFO	2026-06-08 08:33:39	MarkDuplicates	Tracking 386692 as yet unmatched pairs. 23598 records in RAM.
INFO	2026-06-08 08:33:40	MarkDuplicates	Read   339,000,000 records.  Elapsed time: 00:10:58s.  Time for last 1,000,000:    1s.  Last read position: chr12:53,665,269
INFO	2026-06-08 08:33:40	MarkDuplicates	Tracking 386949 as yet unmatched pairs. 23846 records in RAM.
INFO	2026-06-08 08:33:42	MarkDuplicates	Read   340,000,000 records.  Elapsed time: 00:10:59s.  Time for last 1,000,000:    1s.  Last read position: chr12:55,789,115
INFO	2026-06-08 08:33:42	MarkDuplicates	Tracking 384039 as yet unmatched pairs. 20935 records in RAM.
INFO	2026-06-08 08:33:43	MarkDuplicates	Read   341,000,000 records.  Elapsed time: 00:11:01s.  Time for last 1,000,000:    1s.  Last read position: chr12:56,326,718
INFO	2026-06-08 08:33:43	MarkDuplicates	Tracking 383369 as yet unmatched pairs. 20259 records in RAM.
INFO	2026-06-08 08:33:45	MarkDuplicates	Read   342,000,000 records.  Elapsed time: 00:11:03s.  Time for last 1,000,000:    1s.  Last read position: chr12:56,720,087
INFO	2026-06-08 08:33:45	MarkDuplicates	Tracking 382072 as yet unmatched pairs. 18961 records in RAM.
INFO	2026-06-08 08:33:47	MarkDuplicates	Read   343,000,000 records.  Elapsed time: 00:11:04s.  Time for last 1,000,000:    1s.  Last read position: chr12:57,106,225
INFO	2026-06-08 08:33:47	MarkDuplicates	Tracking 384983 as yet unmatched pairs. 21862 records in RAM.
INFO	2026-06-08 08:33:49	MarkDuplicates	Read   344,000,000 records.  Elapsed time: 00:11:06s.  Time for last 1,000,000:    1s.  Last read position: chr12:57,527,888
INFO	2026-06-08 08:33:49	MarkDuplicates	Tracking 380599 as yet unmatched pairs. 17474 records in RAM.
INFO	2026-06-08 08:33:50	MarkDuplicates	Read   345,000,000 records.  Elapsed time: 00:11:08s.  Time for last 1,000,000:    1s.  Last read position: chr12:64,474,338
INFO	2026-06-08 08:33:50	MarkDuplicates	Tracking 378704 as yet unmatched pairs. 15572 records in RAM.
INFO	2026-06-08 08:33:52	MarkDuplicates	Read   346,000,000 records.  Elapsed time: 00:11:09s.  Time for last 1,000,000:    1s.  Last read position: chr12:70,006,030
INFO	2026-06-08 08:33:52	MarkDuplicates	Tracking 377759 as yet unmatched pairs. 14611 records in RAM.
INFO	2026-06-08 08:33:53	MarkDuplicates	Read   347,000,000 records.  Elapsed time: 00:11:11s.  Time for last 1,000,000:    1s.  Last read position: chr12:92,143,305
INFO	2026-06-08 08:33:53	MarkDuplicates	Tracking 376993 as yet unmatched pairs. 13833 records in RAM.
INFO	2026-06-08 08:33:55	MarkDuplicates	Read   348,000,000 records.  Elapsed time: 00:11:13s.  Time for last 1,000,000:    1s.  Last read position: chr12:96,269,138
INFO	2026-06-08 08:33:55	MarkDuplicates	Tracking 376065 as yet unmatched pairs. 12872 records in RAM.
INFO	2026-06-08 08:33:57	MarkDuplicates	Read   349,000,000 records.  Elapsed time: 00:11:14s.  Time for last 1,000,000:    1s.  Last read position: chr12:103,984,785
INFO	2026-06-08 08:33:57	MarkDuplicates	Tracking 375226 as yet unmatched pairs. 12017 records in RAM.
INFO	2026-06-08 08:33:59	MarkDuplicates	Read   350,000,000 records.  Elapsed time: 00:11:16s.  Time for last 1,000,000:    2s.  Last read position: chr12:108,641,590
INFO	2026-06-08 08:33:59	MarkDuplicates	Tracking 374109 as yet unmatched pairs. 10892 records in RAM.
INFO	2026-06-08 08:34:01	MarkDuplicates	Read   351,000,000 records.  Elapsed time: 00:11:18s.  Time for last 1,000,000:    1s.  Last read position: chr12:111,418,711
INFO	2026-06-08 08:34:01	MarkDuplicates	Tracking 375579 as yet unmatched pairs. 12349 records in RAM.
INFO	2026-06-08 08:34:03	MarkDuplicates	Read   352,000,000 records.  Elapsed time: 00:11:20s.  Time for last 1,000,000:    1s.  Last read position: chr12:112,408,269
INFO	2026-06-08 08:34:03	MarkDuplicates	Tracking 372942 as yet unmatched pairs. 9693 records in RAM.
INFO	2026-06-08 08:34:04	MarkDuplicates	Read   353,000,000 records.  Elapsed time: 00:11:22s.  Time for last 1,000,000:    1s.  Last read position: chr12:113,273,245
INFO	2026-06-08 08:34:04	MarkDuplicates	Tracking 371491 as yet unmatched pairs. 8229 records in RAM.
INFO	2026-06-08 08:34:06	MarkDuplicates	Read   354,000,000 records.  Elapsed time: 00:11:23s.  Time for last 1,000,000:    1s.  Last read position: chr12:120,153,877
INFO	2026-06-08 08:34:06	MarkDuplicates	Tracking 370346 as yet unmatched pairs. 7067 records in RAM.
INFO	2026-06-08 08:34:07	MarkDuplicates	Read   355,000,000 records.  Elapsed time: 00:11:25s.  Time for last 1,000,000:    1s.  Last read position: chr12:121,405,504
INFO	2026-06-08 08:34:07	MarkDuplicates	Tracking 368929 as yet unmatched pairs. 5636 records in RAM.
INFO	2026-06-08 08:34:09	MarkDuplicates	Read   356,000,000 records.  Elapsed time: 00:11:27s.  Time for last 1,000,000:    1s.  Last read position: chr12:122,981,844
INFO	2026-06-08 08:34:09	MarkDuplicates	Tracking 369123 as yet unmatched pairs. 5825 records in RAM.
INFO	2026-06-08 08:34:11	MarkDuplicates	Read   357,000,000 records.  Elapsed time: 00:11:28s.  Time for last 1,000,000:    1s.  Last read position: chr12:124,372,235
INFO	2026-06-08 08:34:11	MarkDuplicates	Tracking 367682 as yet unmatched pairs. 4382 records in RAM.
INFO	2026-06-08 08:34:12	MarkDuplicates	Read   358,000,000 records.  Elapsed time: 00:11:30s.  Time for last 1,000,000:    1s.  Last read position: chr12:131,960,867
INFO	2026-06-08 08:34:12	MarkDuplicates	Tracking 366106 as yet unmatched pairs. 2799 records in RAM.
INFO	2026-06-08 08:34:14	MarkDuplicates	Read   359,000,000 records.  Elapsed time: 00:11:31s.  Time for last 1,000,000:    1s.  Last read position: chr12:132,782,412
INFO	2026-06-08 08:34:14	MarkDuplicates	Tracking 364182 as yet unmatched pairs. 866 records in RAM.
INFO	2026-06-08 08:34:16	MarkDuplicates	Read   360,000,000 records.  Elapsed time: 00:11:33s.  Time for last 1,000,000:    1s.  Last read position: chr13:20,084,136
INFO	2026-06-08 08:34:16	MarkDuplicates	Tracking 363628 as yet unmatched pairs. 8382 records in RAM.
INFO	2026-06-08 08:34:17	MarkDuplicates	Read   361,000,000 records.  Elapsed time: 00:11:35s.  Time for last 1,000,000:    1s.  Last read position: chr13:28,138,789
INFO	2026-06-08 08:34:17	MarkDuplicates	Tracking 362484 as yet unmatched pairs. 7233 records in RAM.
INFO	2026-06-08 08:34:19	MarkDuplicates	Read   362,000,000 records.  Elapsed time: 00:11:36s.  Time for last 1,000,000:    1s.  Last read position: chr13:39,013,549
INFO	2026-06-08 08:34:19	MarkDuplicates	Tracking 361567 as yet unmatched pairs. 6287 records in RAM.
INFO	2026-06-08 08:34:21	MarkDuplicates	Read   363,000,000 records.  Elapsed time: 00:11:38s.  Time for last 1,000,000:    1s.  Last read position: chr13:45,337,355
INFO	2026-06-08 08:34:21	MarkDuplicates	Tracking 362128 as yet unmatched pairs. 6819 records in RAM.
INFO	2026-06-08 08:34:23	MarkDuplicates	Read   364,000,000 records.  Elapsed time: 00:11:40s.  Time for last 1,000,000:    2s.  Last read position: chr13:49,136,334
INFO	2026-06-08 08:34:23	MarkDuplicates	Tracking 359527 as yet unmatched pairs. 4204 records in RAM.
INFO	2026-06-08 08:34:25	MarkDuplicates	Read   365,000,000 records.  Elapsed time: 00:11:42s.  Time for last 1,000,000:    1s.  Last read position: chr13:77,007,754
INFO	2026-06-08 08:34:25	MarkDuplicates	Tracking 358592 as yet unmatched pairs. 3252 records in RAM.
INFO	2026-06-08 08:34:27	MarkDuplicates	Read   366,000,000 records.  Elapsed time: 00:11:44s.  Time for last 1,000,000:    1s.  Last read position: chr13:95,164,504
INFO	2026-06-08 08:34:27	MarkDuplicates	Tracking 357653 as yet unmatched pairs. 2296 records in RAM.
INFO	2026-06-08 08:34:29	MarkDuplicates	Read   367,000,000 records.  Elapsed time: 00:11:46s.  Time for last 1,000,000:    2s.  Last read position: chr13:108,286,806
INFO	2026-06-08 08:34:29	MarkDuplicates	Tracking 356527 as yet unmatched pairs. 1165 records in RAM.
INFO	2026-06-08 08:34:31	MarkDuplicates	Read   368,000,000 records.  Elapsed time: 00:11:48s.  Time for last 1,000,000:    1s.  Last read position: chr14:20,368,833
INFO	2026-06-08 08:34:31	MarkDuplicates	Tracking 355455 as yet unmatched pairs. 24218 records in RAM.
INFO	2026-06-08 08:34:32	MarkDuplicates	Read   369,000,000 records.  Elapsed time: 00:11:50s.  Time for last 1,000,000:    1s.  Last read position: chr14:22,589,044
INFO	2026-06-08 08:34:32	MarkDuplicates	Tracking 354488 as yet unmatched pairs. 23249 records in RAM.
INFO	2026-06-08 08:34:34	MarkDuplicates	Read   370,000,000 records.  Elapsed time: 00:11:51s.  Time for last 1,000,000:    1s.  Last read position: chr14:23,565,644
INFO	2026-06-08 08:34:34	MarkDuplicates	Tracking 353786 as yet unmatched pairs. 22545 records in RAM.
INFO	2026-06-08 08:34:36	MarkDuplicates	Read   371,000,000 records.  Elapsed time: 00:11:53s.  Time for last 1,000,000:    1s.  Last read position: chr14:24,194,892
INFO	2026-06-08 08:34:36	MarkDuplicates	Tracking 352295 as yet unmatched pairs. 21049 records in RAM.
INFO	2026-06-08 08:34:37	MarkDuplicates	Read   372,000,000 records.  Elapsed time: 00:11:55s.  Time for last 1,000,000:    1s.  Last read position: chr14:31,141,906
INFO	2026-06-08 08:34:37	MarkDuplicates	Tracking 350976 as yet unmatched pairs. 19717 records in RAM.
INFO	2026-06-08 08:34:39	MarkDuplicates	Read   373,000,000 records.  Elapsed time: 00:11:56s.  Time for last 1,000,000:    1s.  Last read position: chr14:39,294,028
INFO	2026-06-08 08:34:39	MarkDuplicates	Tracking 350422 as yet unmatched pairs. 19157 records in RAM.
INFO	2026-06-08 08:34:41	MarkDuplicates	Read   374,000,000 records.  Elapsed time: 00:11:58s.  Time for last 1,000,000:    1s.  Last read position: chr14:49,586,624
INFO	2026-06-08 08:34:41	MarkDuplicates	Tracking 378481 as yet unmatched pairs. 47201 records in RAM.
INFO	2026-06-08 08:34:42	MarkDuplicates	Read   375,000,000 records.  Elapsed time: 00:11:59s.  Time for last 1,000,000:    1s.  Last read position: chr14:49,586,706
INFO	2026-06-08 08:34:42	MarkDuplicates	Tracking 372461 as yet unmatched pairs. 41177 records in RAM.
INFO	2026-06-08 08:34:43	MarkDuplicates	Read   376,000,000 records.  Elapsed time: 00:12:01s.  Time for last 1,000,000:    1s.  Last read position: chr14:49,853,676
INFO	2026-06-08 08:34:43	MarkDuplicates	Tracking 351256 as yet unmatched pairs. 19957 records in RAM.
INFO	2026-06-08 08:34:44	MarkDuplicates	Read   377,000,000 records.  Elapsed time: 00:12:02s.  Time for last 1,000,000:    1s.  Last read position: chr14:49,862,603
INFO	2026-06-08 08:34:44	MarkDuplicates	Tracking 373211 as yet unmatched pairs. 41900 records in RAM.
INFO	2026-06-08 08:34:46	MarkDuplicates	Read   378,000,000 records.  Elapsed time: 00:12:03s.  Time for last 1,000,000:    1s.  Last read position: chr14:49,862,686
INFO	2026-06-08 08:34:46	MarkDuplicates	Tracking 388893 as yet unmatched pairs. 57572 records in RAM.
INFO	2026-06-08 08:34:47	MarkDuplicates	Read   379,000,000 records.  Elapsed time: 00:12:05s.  Time for last 1,000,000:    1s.  Last read position: chr14:53,144,882
INFO	2026-06-08 08:34:47	MarkDuplicates	Tracking 346528 as yet unmatched pairs. 15197 records in RAM.
INFO	2026-06-08 08:34:49	MarkDuplicates	Read   380,000,000 records.  Elapsed time: 00:12:06s.  Time for last 1,000,000:    1s.  Last read position: chr14:60,149,449
INFO	2026-06-08 08:34:49	MarkDuplicates	Tracking 344476 as yet unmatched pairs. 13138 records in RAM.
INFO	2026-06-08 08:34:51	MarkDuplicates	Read   381,000,000 records.  Elapsed time: 00:12:08s.  Time for last 1,000,000:    1s.  Last read position: chr14:64,175,056
INFO	2026-06-08 08:34:51	MarkDuplicates	Tracking 344253 as yet unmatched pairs. 12915 records in RAM.
INFO	2026-06-08 08:34:53	MarkDuplicates	Read   382,000,000 records.  Elapsed time: 00:12:10s.  Time for last 1,000,000:    1s.  Last read position: chr14:67,953,146
INFO	2026-06-08 08:34:53	MarkDuplicates	Tracking 342665 as yet unmatched pairs. 11310 records in RAM.
INFO	2026-06-08 08:34:55	MarkDuplicates	Read   383,000,000 records.  Elapsed time: 00:12:12s.  Time for last 1,000,000:    1s.  Last read position: chr14:71,330,578
INFO	2026-06-08 08:34:55	MarkDuplicates	Tracking 341899 as yet unmatched pairs. 10527 records in RAM.
INFO	2026-06-08 08:34:57	MarkDuplicates	Read   384,000,000 records.  Elapsed time: 00:12:14s.  Time for last 1,000,000:    2s.  Last read position: chr14:73,739,681
INFO	2026-06-08 08:34:57	MarkDuplicates	Tracking 342084 as yet unmatched pairs. 10696 records in RAM.
INFO	2026-06-08 08:34:58	MarkDuplicates	Read   385,000,000 records.  Elapsed time: 00:12:16s.  Time for last 1,000,000:    1s.  Last read position: chr14:77,357,901
INFO	2026-06-08 08:34:58	MarkDuplicates	Tracking 339596 as yet unmatched pairs. 8172 records in RAM.
INFO	2026-06-08 08:35:00	MarkDuplicates	Read   386,000,000 records.  Elapsed time: 00:12:17s.  Time for last 1,000,000:    1s.  Last read position: chr14:91,342,461
INFO	2026-06-08 08:35:00	MarkDuplicates	Tracking 339121 as yet unmatched pairs. 7680 records in RAM.
INFO	2026-06-08 08:35:01	MarkDuplicates	Read   387,000,000 records.  Elapsed time: 00:12:19s.  Time for last 1,000,000:    1s.  Last read position: chr14:95,710,229
INFO	2026-06-08 08:35:01	MarkDuplicates	Tracking 340090 as yet unmatched pairs. 8647 records in RAM.
INFO	2026-06-08 08:35:03	MarkDuplicates	Read   388,000,000 records.  Elapsed time: 00:12:21s.  Time for last 1,000,000:    1s.  Last read position: chr14:101,861,624
INFO	2026-06-08 08:35:03	MarkDuplicates	Tracking 336893 as yet unmatched pairs. 5393 records in RAM.
INFO	2026-06-08 08:35:05	MarkDuplicates	Read   389,000,000 records.  Elapsed time: 00:12:22s.  Time for last 1,000,000:    1s.  Last read position: chr14:103,535,500
INFO	2026-06-08 08:35:05	MarkDuplicates	Tracking 335634 as yet unmatched pairs. 4125 records in RAM.
INFO	2026-06-08 08:35:06	MarkDuplicates	Read   390,000,000 records.  Elapsed time: 00:12:24s.  Time for last 1,000,000:    1s.  Last read position: chr14:105,625,875
INFO	2026-06-08 08:35:06	MarkDuplicates	Tracking 334361 as yet unmatched pairs. 2845 records in RAM.
INFO	2026-06-08 08:35:08	MarkDuplicates	Read   391,000,000 records.  Elapsed time: 00:12:25s.  Time for last 1,000,000:    1s.  Last read position: chr14:105,770,122
INFO	2026-06-08 08:35:08	MarkDuplicates	Tracking 334340 as yet unmatched pairs. 2814 records in RAM.
INFO	2026-06-08 08:35:09	MarkDuplicates	Read   392,000,000 records.  Elapsed time: 00:12:27s.  Time for last 1,000,000:    1s.  Last read position: chr14:105,907,462
INFO	2026-06-08 08:35:09	MarkDuplicates	Tracking 333005 as yet unmatched pairs. 1453 records in RAM.
INFO	2026-06-08 08:35:11	MarkDuplicates	Read   393,000,000 records.  Elapsed time: 00:12:28s.  Time for last 1,000,000:    1s.  Last read position: chr14:106,538,066
INFO	2026-06-08 08:35:11	MarkDuplicates	Tracking 332067 as yet unmatched pairs. 507 records in RAM.
INFO	2026-06-08 08:35:13	MarkDuplicates	Read   394,000,000 records.  Elapsed time: 00:12:30s.  Time for last 1,000,000:    1s.  Last read position: chr15:30,765,462
INFO	2026-06-08 08:35:13	MarkDuplicates	Tracking 330769 as yet unmatched pairs. 17883 records in RAM.
INFO	2026-06-08 08:35:14	MarkDuplicates	Read   395,000,000 records.  Elapsed time: 00:12:32s.  Time for last 1,000,000:    1s.  Last read position: chr15:34,886,534
INFO	2026-06-08 08:35:14	MarkDuplicates	Tracking 330021 as yet unmatched pairs. 17134 records in RAM.
INFO	2026-06-08 08:35:16	MarkDuplicates	Read   396,000,000 records.  Elapsed time: 00:12:34s.  Time for last 1,000,000:    2s.  Last read position: chr15:41,069,652
INFO	2026-06-08 08:35:16	MarkDuplicates	Tracking 328799 as yet unmatched pairs. 15902 records in RAM.
INFO	2026-06-08 08:35:18	MarkDuplicates	Read   397,000,000 records.  Elapsed time: 00:12:35s.  Time for last 1,000,000:    1s.  Last read position: chr15:42,639,675
INFO	2026-06-08 08:35:18	MarkDuplicates	Tracking 327995 as yet unmatched pairs. 15065 records in RAM.
INFO	2026-06-08 08:35:20	MarkDuplicates	Read   398,000,000 records.  Elapsed time: 00:12:38s.  Time for last 1,000,000:    2s.  Last read position: chr15:44,289,160
INFO	2026-06-08 08:35:20	MarkDuplicates	Tracking 327386 as yet unmatched pairs. 14437 records in RAM.
INFO	2026-06-08 08:35:22	MarkDuplicates	Read   399,000,000 records.  Elapsed time: 00:12:39s.  Time for last 1,000,000:    1s.  Last read position: chr15:50,477,412
INFO	2026-06-08 08:35:22	MarkDuplicates	Tracking 326139 as yet unmatched pairs. 13176 records in RAM.
INFO	2026-06-08 08:35:24	MarkDuplicates	Read   400,000,000 records.  Elapsed time: 00:12:41s.  Time for last 1,000,000:    1s.  Last read position: chr15:56,184,020
INFO	2026-06-08 08:35:24	MarkDuplicates	Tracking 325437 as yet unmatched pairs. 12472 records in RAM.
INFO	2026-06-08 08:35:25	MarkDuplicates	Read   401,000,000 records.  Elapsed time: 00:12:43s.  Time for last 1,000,000:    1s.  Last read position: chr15:59,769,054
INFO	2026-06-08 08:35:25	MarkDuplicates	Tracking 324345 as yet unmatched pairs. 11349 records in RAM.
INFO	2026-06-08 08:35:27	MarkDuplicates	Read   402,000,000 records.  Elapsed time: 00:12:44s.  Time for last 1,000,000:    1s.  Last read position: chr15:64,160,174
INFO	2026-06-08 08:35:27	MarkDuplicates	Tracking 324053 as yet unmatched pairs. 11047 records in RAM.
INFO	2026-06-08 08:35:29	MarkDuplicates	Read   403,000,000 records.  Elapsed time: 00:12:46s.  Time for last 1,000,000:    1s.  Last read position: chr15:66,333,751
INFO	2026-06-08 08:35:29	MarkDuplicates	Tracking 322454 as yet unmatched pairs. 9447 records in RAM.
INFO	2026-06-08 08:35:30	MarkDuplicates	Read   404,000,000 records.  Elapsed time: 00:12:48s.  Time for last 1,000,000:    1s.  Last read position: chr15:71,164,863
INFO	2026-06-08 08:35:30	MarkDuplicates	Tracking 321460 as yet unmatched pairs. 8448 records in RAM.
INFO	2026-06-08 08:35:32	MarkDuplicates	Read   405,000,000 records.  Elapsed time: 00:12:49s.  Time for last 1,000,000:    1s.  Last read position: chr15:74,033,385
INFO	2026-06-08 08:35:32	MarkDuplicates	Tracking 325127 as yet unmatched pairs. 12112 records in RAM.
INFO	2026-06-08 08:35:33	MarkDuplicates	Read   406,000,000 records.  Elapsed time: 00:12:51s.  Time for last 1,000,000:    1s.  Last read position: chr15:74,923,739
INFO	2026-06-08 08:35:33	MarkDuplicates	Tracking 320228 as yet unmatched pairs. 7208 records in RAM.
INFO	2026-06-08 08:35:35	MarkDuplicates	Read   407,000,000 records.  Elapsed time: 00:12:52s.  Time for last 1,000,000:    1s.  Last read position: chr15:75,843,684
INFO	2026-06-08 08:35:35	MarkDuplicates	Tracking 318303 as yet unmatched pairs. 5279 records in RAM.
INFO	2026-06-08 08:35:37	MarkDuplicates	Read   408,000,000 records.  Elapsed time: 00:12:54s.  Time for last 1,000,000:    1s.  Last read position: chr15:80,076,682
INFO	2026-06-08 08:35:37	MarkDuplicates	Tracking 317079 as yet unmatched pairs. 4055 records in RAM.
INFO	2026-06-08 08:35:38	MarkDuplicates	Read   409,000,000 records.  Elapsed time: 00:12:56s.  Time for last 1,000,000:    1s.  Last read position: chr15:85,579,905
INFO	2026-06-08 08:35:38	MarkDuplicates	Tracking 316010 as yet unmatched pairs. 2968 records in RAM.
INFO	2026-06-08 08:35:40	MarkDuplicates	Read   410,000,000 records.  Elapsed time: 00:12:58s.  Time for last 1,000,000:    2s.  Last read position: chr15:90,426,248
INFO	2026-06-08 08:35:40	MarkDuplicates	Tracking 314790 as yet unmatched pairs. 1747 records in RAM.
INFO	2026-06-08 08:35:43	MarkDuplicates	Read   411,000,000 records.  Elapsed time: 00:13:00s.  Time for last 1,000,000:    2s.  Last read position: chr15:100,959,635
INFO	2026-06-08 08:35:43	MarkDuplicates	Tracking 314387 as yet unmatched pairs. 1327 records in RAM.
INFO	2026-06-08 08:35:45	MarkDuplicates	Read   412,000,000 records.  Elapsed time: 00:13:02s.  Time for last 1,000,000:    2s.  Last read position: chr16:399,404
INFO	2026-06-08 08:35:45	MarkDuplicates	Tracking 313011 as yet unmatched pairs. 40135 records in RAM.
INFO	2026-06-08 08:35:47	MarkDuplicates	Read   413,000,000 records.  Elapsed time: 00:13:04s.  Time for last 1,000,000:    1s.  Last read position: chr16:864,209
INFO	2026-06-08 08:35:47	MarkDuplicates	Tracking 310578 as yet unmatched pairs. 37692 records in RAM.
INFO	2026-06-08 08:35:49	MarkDuplicates	Read   414,000,000 records.  Elapsed time: 00:13:06s.  Time for last 1,000,000:    1s.  Last read position: chr16:1,964,283
INFO	2026-06-08 08:35:49	MarkDuplicates	Tracking 309824 as yet unmatched pairs. 36929 records in RAM.
INFO	2026-06-08 08:35:50	MarkDuplicates	Read   415,000,000 records.  Elapsed time: 00:13:08s.  Time for last 1,000,000:    1s.  Last read position: chr16:2,234,749
INFO	2026-06-08 08:35:50	MarkDuplicates	Tracking 307608 as yet unmatched pairs. 34713 records in RAM.
INFO	2026-06-08 08:35:52	MarkDuplicates	Read   416,000,000 records.  Elapsed time: 00:13:09s.  Time for last 1,000,000:    1s.  Last read position: chr16:2,765,409
INFO	2026-06-08 08:35:52	MarkDuplicates	Tracking 307045 as yet unmatched pairs. 34146 records in RAM.
INFO	2026-06-08 08:35:54	MarkDuplicates	Read   417,000,000 records.  Elapsed time: 00:13:11s.  Time for last 1,000,000:    1s.  Last read position: chr16:3,563,566
INFO	2026-06-08 08:35:54	MarkDuplicates	Tracking 305053 as yet unmatched pairs. 32149 records in RAM.
INFO	2026-06-08 08:35:56	MarkDuplicates	Read   418,000,000 records.  Elapsed time: 00:13:13s.  Time for last 1,000,000:    1s.  Last read position: chr16:4,683,225
INFO	2026-06-08 08:35:56	MarkDuplicates	Tracking 304330 as yet unmatched pairs. 31411 records in RAM.
INFO	2026-06-08 08:35:57	MarkDuplicates	Read   419,000,000 records.  Elapsed time: 00:13:15s.  Time for last 1,000,000:    1s.  Last read position: chr16:10,944,748
INFO	2026-06-08 08:35:57	MarkDuplicates	Tracking 302604 as yet unmatched pairs. 29683 records in RAM.
INFO	2026-06-08 08:35:59	MarkDuplicates	Read   420,000,000 records.  Elapsed time: 00:13:16s.  Time for last 1,000,000:    1s.  Last read position: chr16:12,397,054
INFO	2026-06-08 08:35:59	MarkDuplicates	Tracking 301645 as yet unmatched pairs. 28714 records in RAM.
INFO	2026-06-08 08:36:01	MarkDuplicates	Read   421,000,000 records.  Elapsed time: 00:13:18s.  Time for last 1,000,000:    1s.  Last read position: chr16:15,061,674
INFO	2026-06-08 08:36:01	MarkDuplicates	Tracking 300794 as yet unmatched pairs. 27863 records in RAM.
INFO	2026-06-08 08:36:02	MarkDuplicates	Read   422,000,000 records.  Elapsed time: 00:13:19s.  Time for last 1,000,000:    1s.  Last read position: chr16:16,325,340
INFO	2026-06-08 08:36:02	MarkDuplicates	Tracking 300150 as yet unmatched pairs. 27219 records in RAM.
INFO	2026-06-08 08:36:03	MarkDuplicates	Read   423,000,000 records.  Elapsed time: 00:13:21s.  Time for last 1,000,000:    1s.  Last read position: chr16:18,417,390
INFO	2026-06-08 08:36:03	MarkDuplicates	Tracking 299456 as yet unmatched pairs. 26525 records in RAM.
INFO	2026-06-08 08:36:05	MarkDuplicates	Read   424,000,000 records.  Elapsed time: 00:13:22s.  Time for last 1,000,000:    1s.  Last read position: chr16:21,402,478
INFO	2026-06-08 08:36:05	MarkDuplicates	Tracking 298859 as yet unmatched pairs. 25925 records in RAM.
INFO	2026-06-08 08:36:06	MarkDuplicates	Read   425,000,000 records.  Elapsed time: 00:13:23s.  Time for last 1,000,000:    1s.  Last read position: chr16:21,437,188
INFO	2026-06-08 08:36:06	MarkDuplicates	Tracking 298626 as yet unmatched pairs. 25692 records in RAM.
INFO	2026-06-08 08:36:07	MarkDuplicates	Read   426,000,000 records.  Elapsed time: 00:13:25s.  Time for last 1,000,000:    1s.  Last read position: chr16:21,837,515
INFO	2026-06-08 08:36:07	MarkDuplicates	Tracking 299684 as yet unmatched pairs. 26750 records in RAM.
INFO	2026-06-08 08:36:09	MarkDuplicates	Read   427,000,000 records.  Elapsed time: 00:13:26s.  Time for last 1,000,000:    1s.  Last read position: chr16:22,459,422
INFO	2026-06-08 08:36:09	MarkDuplicates	Tracking 298615 as yet unmatched pairs. 25671 records in RAM.
INFO	2026-06-08 08:36:10	MarkDuplicates	Read   428,000,000 records.  Elapsed time: 00:13:27s.  Time for last 1,000,000:    1s.  Last read position: chr16:22,534,117
INFO	2026-06-08 08:36:10	MarkDuplicates	Tracking 298315 as yet unmatched pairs. 25371 records in RAM.
INFO	2026-06-08 08:36:11	MarkDuplicates	Read   429,000,000 records.  Elapsed time: 00:13:29s.  Time for last 1,000,000:    1s.  Last read position: chr16:24,219,941
INFO	2026-06-08 08:36:11	MarkDuplicates	Tracking 297062 as yet unmatched pairs. 24118 records in RAM.
INFO	2026-06-08 08:36:13	MarkDuplicates	Read   430,000,000 records.  Elapsed time: 00:13:30s.  Time for last 1,000,000:    1s.  Last read position: chr16:28,383,185
INFO	2026-06-08 08:36:13	MarkDuplicates	Tracking 296784 as yet unmatched pairs. 23835 records in RAM.
INFO	2026-06-08 08:36:14	MarkDuplicates	Read   431,000,000 records.  Elapsed time: 00:13:32s.  Time for last 1,000,000:    1s.  Last read position: chr16:28,901,647
INFO	2026-06-08 08:36:14	MarkDuplicates	Tracking 294997 as yet unmatched pairs. 22031 records in RAM.
INFO	2026-06-08 08:36:16	MarkDuplicates	Read   432,000,000 records.  Elapsed time: 00:13:33s.  Time for last 1,000,000:    1s.  Last read position: chr16:29,449,520
INFO	2026-06-08 08:36:16	MarkDuplicates	Tracking 295846 as yet unmatched pairs. 22872 records in RAM.
INFO	2026-06-08 08:36:17	MarkDuplicates	Read   433,000,000 records.  Elapsed time: 00:13:34s.  Time for last 1,000,000:    1s.  Last read position: chr16:29,539,739
INFO	2026-06-08 08:36:17	MarkDuplicates	Tracking 294127 as yet unmatched pairs. 21153 records in RAM.
INFO	2026-06-08 08:36:18	MarkDuplicates	Read   434,000,000 records.  Elapsed time: 00:13:36s.  Time for last 1,000,000:    1s.  Last read position: chr16:30,001,021
INFO	2026-06-08 08:36:18	MarkDuplicates	Tracking 293046 as yet unmatched pairs. 20069 records in RAM.
INFO	2026-06-08 08:36:20	MarkDuplicates	Read   435,000,000 records.  Elapsed time: 00:13:37s.  Time for last 1,000,000:    1s.  Last read position: chr16:30,225,506
INFO	2026-06-08 08:36:20	MarkDuplicates	Tracking 291943 as yet unmatched pairs. 18963 records in RAM.
INFO	2026-06-08 08:36:21	MarkDuplicates	Read   436,000,000 records.  Elapsed time: 00:13:39s.  Time for last 1,000,000:    1s.  Last read position: chr16:30,504,174
INFO	2026-06-08 08:36:21	MarkDuplicates	Tracking 291480 as yet unmatched pairs. 18498 records in RAM.
INFO	2026-06-08 08:36:23	MarkDuplicates	Read   437,000,000 records.  Elapsed time: 00:13:40s.  Time for last 1,000,000:    1s.  Last read position: chr16:30,783,412
INFO	2026-06-08 08:36:23	MarkDuplicates	Tracking 289838 as yet unmatched pairs. 16852 records in RAM.
INFO	2026-06-08 08:36:25	MarkDuplicates	Read   438,000,000 records.  Elapsed time: 00:13:42s.  Time for last 1,000,000:    1s.  Last read position: chr16:31,191,403
INFO	2026-06-08 08:36:25	MarkDuplicates	Tracking 290412 as yet unmatched pairs. 17419 records in RAM.
INFO	2026-06-08 08:36:26	MarkDuplicates	Read   439,000,000 records.  Elapsed time: 00:13:44s.  Time for last 1,000,000:    1s.  Last read position: chr16:50,673,448
INFO	2026-06-08 08:36:26	MarkDuplicates	Tracking 288118 as yet unmatched pairs. 15093 records in RAM.
INFO	2026-06-08 08:36:28	MarkDuplicates	Read   440,000,000 records.  Elapsed time: 00:13:45s.  Time for last 1,000,000:    1s.  Last read position: chr16:57,025,793
INFO	2026-06-08 08:36:28	MarkDuplicates	Tracking 287360 as yet unmatched pairs. 14331 records in RAM.
INFO	2026-06-08 08:36:30	MarkDuplicates	Read   441,000,000 records.  Elapsed time: 00:13:47s.  Time for last 1,000,000:    1s.  Last read position: chr16:58,555,373
INFO	2026-06-08 08:36:30	MarkDuplicates	Tracking 285828 as yet unmatched pairs. 12794 records in RAM.
INFO	2026-06-08 08:36:31	MarkDuplicates	Read   442,000,000 records.  Elapsed time: 00:13:49s.  Time for last 1,000,000:    1s.  Last read position: chr16:67,559,664
INFO	2026-06-08 08:36:31	MarkDuplicates	Tracking 284158 as yet unmatched pairs. 11121 records in RAM.
INFO	2026-06-08 08:36:33	MarkDuplicates	Read   443,000,000 records.  Elapsed time: 00:13:50s.  Time for last 1,000,000:    1s.  Last read position: chr16:68,304,213
INFO	2026-06-08 08:36:33	MarkDuplicates	Tracking 283113 as yet unmatched pairs. 10075 records in RAM.
INFO	2026-06-08 08:36:34	MarkDuplicates	Read   444,000,000 records.  Elapsed time: 00:13:52s.  Time for last 1,000,000:    1s.  Last read position: chr16:70,251,067
INFO	2026-06-08 08:36:34	MarkDuplicates	Tracking 282642 as yet unmatched pairs. 9596 records in RAM.
INFO	2026-06-08 08:36:36	MarkDuplicates	Read   445,000,000 records.  Elapsed time: 00:13:53s.  Time for last 1,000,000:    1s.  Last read position: chr16:71,923,300
INFO	2026-06-08 08:36:36	MarkDuplicates	Tracking 281111 as yet unmatched pairs. 8056 records in RAM.
INFO	2026-06-08 08:36:37	MarkDuplicates	Read   446,000,000 records.  Elapsed time: 00:13:55s.  Time for last 1,000,000:    1s.  Last read position: chr16:77,788,753
INFO	2026-06-08 08:36:37	MarkDuplicates	Tracking 279719 as yet unmatched pairs. 6660 records in RAM.
INFO	2026-06-08 08:36:39	MarkDuplicates	Read   447,000,000 records.  Elapsed time: 00:13:56s.  Time for last 1,000,000:    1s.  Last read position: chr16:84,657,464
INFO	2026-06-08 08:36:39	MarkDuplicates	Tracking 278978 as yet unmatched pairs. 5913 records in RAM.
INFO	2026-06-08 08:36:41	MarkDuplicates	Read   448,000,000 records.  Elapsed time: 00:13:58s.  Time for last 1,000,000:    2s.  Last read position: chr16:87,851,837
INFO	2026-06-08 08:36:41	MarkDuplicates	Tracking 278430 as yet unmatched pairs. 5350 records in RAM.
INFO	2026-06-08 08:36:43	MarkDuplicates	Read   449,000,000 records.  Elapsed time: 00:14:00s.  Time for last 1,000,000:    1s.  Last read position: chr16:88,733,955
INFO	2026-06-08 08:36:43	MarkDuplicates	Tracking 276594 as yet unmatched pairs. 3506 records in RAM.
INFO	2026-06-08 08:36:45	MarkDuplicates	Read   450,000,000 records.  Elapsed time: 00:14:02s.  Time for last 1,000,000:    1s.  Last read position: chr16:89,524,101
INFO	2026-06-08 08:36:45	MarkDuplicates	Tracking 275239 as yet unmatched pairs. 2134 records in RAM.
INFO	2026-06-08 08:36:47	MarkDuplicates	Read   451,000,000 records.  Elapsed time: 00:14:04s.  Time for last 1,000,000:    2s.  Last read position: chr16:90,218,506
INFO	2026-06-08 08:36:47	MarkDuplicates	Tracking 273108 as yet unmatched pairs. 0 records in RAM.
INFO	2026-06-08 08:36:49	MarkDuplicates	Read   452,000,000 records.  Elapsed time: 00:14:06s.  Time for last 1,000,000:    2s.  Last read position: chr17:1,653,546
INFO	2026-06-08 08:36:49	MarkDuplicates	Tracking 272183 as yet unmatched pairs. 43824 records in RAM.
INFO	2026-06-08 08:36:51	MarkDuplicates	Read   453,000,000 records.  Elapsed time: 00:14:08s.  Time for last 1,000,000:    1s.  Last read position: chr17:2,696,742
INFO	2026-06-08 08:36:51	MarkDuplicates	Tracking 271318 as yet unmatched pairs. 42958 records in RAM.
INFO	2026-06-08 08:36:52	MarkDuplicates	Read   454,000,000 records.  Elapsed time: 00:14:10s.  Time for last 1,000,000:    1s.  Last read position: chr17:4,673,092
INFO	2026-06-08 08:36:52	MarkDuplicates	Tracking 269762 as yet unmatched pairs. 41402 records in RAM.
INFO	2026-06-08 08:36:54	MarkDuplicates	Read   455,000,000 records.  Elapsed time: 00:14:11s.  Time for last 1,000,000:    1s.  Last read position: chr17:5,409,239
INFO	2026-06-08 08:36:54	MarkDuplicates	Tracking 268470 as yet unmatched pairs. 40109 records in RAM.
INFO	2026-06-08 08:36:56	MarkDuplicates	Read   456,000,000 records.  Elapsed time: 00:14:13s.  Time for last 1,000,000:    1s.  Last read position: chr17:7,311,449
INFO	2026-06-08 08:36:56	MarkDuplicates	Tracking 268102 as yet unmatched pairs. 39737 records in RAM.
INFO	2026-06-08 08:36:57	MarkDuplicates	Read   457,000,000 records.  Elapsed time: 00:14:15s.  Time for last 1,000,000:    1s.  Last read position: chr17:7,580,010
INFO	2026-06-08 08:36:57	MarkDuplicates	Tracking 265913 as yet unmatched pairs. 37548 records in RAM.
INFO	2026-06-08 08:36:59	MarkDuplicates	Read   458,000,000 records.  Elapsed time: 00:14:16s.  Time for last 1,000,000:    1s.  Last read position: chr17:8,207,602
INFO	2026-06-08 08:36:59	MarkDuplicates	Tracking 264997 as yet unmatched pairs. 36626 records in RAM.
INFO	2026-06-08 08:37:01	MarkDuplicates	Read   459,000,000 records.  Elapsed time: 00:14:18s.  Time for last 1,000,000:    1s.  Last read position: chr17:16,073,471
INFO	2026-06-08 08:37:01	MarkDuplicates	Tracking 263806 as yet unmatched pairs. 35431 records in RAM.
INFO	2026-06-08 08:37:02	MarkDuplicates	Read   460,000,000 records.  Elapsed time: 00:14:20s.  Time for last 1,000,000:    1s.  Last read position: chr17:17,751,634
INFO	2026-06-08 08:37:02	MarkDuplicates	Tracking 262668 as yet unmatched pairs. 34289 records in RAM.
INFO	2026-06-08 08:37:04	MarkDuplicates	Read   461,000,000 records.  Elapsed time: 00:14:21s.  Time for last 1,000,000:    1s.  Last read position: chr17:18,977,900
INFO	2026-06-08 08:37:04	MarkDuplicates	Tracking 261438 as yet unmatched pairs. 33048 records in RAM.
INFO	2026-06-08 08:37:05	MarkDuplicates	Read   462,000,000 records.  Elapsed time: 00:14:23s.  Time for last 1,000,000:    1s.  Last read position: chr17:27,642,236
INFO	2026-06-08 08:37:05	MarkDuplicates	Tracking 264323 as yet unmatched pairs. 35930 records in RAM.
INFO	2026-06-08 08:37:07	MarkDuplicates	Read   463,000,000 records.  Elapsed time: 00:14:24s.  Time for last 1,000,000:    1s.  Last read position: chr17:28,720,237
INFO	2026-06-08 08:37:07	MarkDuplicates	Tracking 259757 as yet unmatched pairs. 31362 records in RAM.
INFO	2026-06-08 08:37:09	MarkDuplicates	Read   464,000,000 records.  Elapsed time: 00:14:26s.  Time for last 1,000,000:    1s.  Last read position: chr17:29,906,634
INFO	2026-06-08 08:37:09	MarkDuplicates	Tracking 258441 as yet unmatched pairs. 30044 records in RAM.
INFO	2026-06-08 08:37:10	MarkDuplicates	Read   465,000,000 records.  Elapsed time: 00:14:28s.  Time for last 1,000,000:    1s.  Last read position: chr17:32,360,625
INFO	2026-06-08 08:37:10	MarkDuplicates	Tracking 257949 as yet unmatched pairs. 29549 records in RAM.
INFO	2026-06-08 08:37:12	MarkDuplicates	Read   466,000,000 records.  Elapsed time: 00:14:29s.  Time for last 1,000,000:    1s.  Last read position: chr17:35,822,640
INFO	2026-06-08 08:37:12	MarkDuplicates	Tracking 259413 as yet unmatched pairs. 31003 records in RAM.
INFO	2026-06-08 08:37:13	MarkDuplicates	Read   467,000,000 records.  Elapsed time: 00:14:31s.  Time for last 1,000,000:    1s.  Last read position: chr17:37,538,386
INFO	2026-06-08 08:37:13	MarkDuplicates	Tracking 256032 as yet unmatched pairs. 27622 records in RAM.
INFO	2026-06-08 08:37:15	MarkDuplicates	Read   468,000,000 records.  Elapsed time: 00:14:32s.  Time for last 1,000,000:    1s.  Last read position: chr17:38,716,450
INFO	2026-06-08 08:37:15	MarkDuplicates	Tracking 255411 as yet unmatched pairs. 27001 records in RAM.
INFO	2026-06-08 08:37:16	MarkDuplicates	Read   469,000,000 records.  Elapsed time: 00:14:34s.  Time for last 1,000,000:    1s.  Last read position: chr17:39,530,765
INFO	2026-06-08 08:37:16	MarkDuplicates	Tracking 254409 as yet unmatched pairs. 25999 records in RAM.
INFO	2026-06-08 08:37:18	MarkDuplicates	Read   470,000,000 records.  Elapsed time: 00:14:36s.  Time for last 1,000,000:    2s.  Last read position: chr17:40,406,567
INFO	2026-06-08 08:37:18	MarkDuplicates	Tracking 252916 as yet unmatched pairs. 24506 records in RAM.
INFO	2026-06-08 08:37:20	MarkDuplicates	Read   471,000,000 records.  Elapsed time: 00:14:38s.  Time for last 1,000,000:    2s.  Last read position: chr17:42,322,457
INFO	2026-06-08 08:37:20	MarkDuplicates	Tracking 251728 as yet unmatched pairs. 23306 records in RAM.
INFO	2026-06-08 08:37:22	MarkDuplicates	Read   472,000,000 records.  Elapsed time: 00:14:40s.  Time for last 1,000,000:    1s.  Last read position: chr17:42,990,888
INFO	2026-06-08 08:37:22	MarkDuplicates	Tracking 250559 as yet unmatched pairs. 22136 records in RAM.
INFO	2026-06-08 08:37:24	MarkDuplicates	Read   473,000,000 records.  Elapsed time: 00:14:41s.  Time for last 1,000,000:    1s.  Last read position: chr17:44,326,831
INFO	2026-06-08 08:37:24	MarkDuplicates	Tracking 249249 as yet unmatched pairs. 20826 records in RAM.
INFO	2026-06-08 08:37:26	MarkDuplicates	Read   474,000,000 records.  Elapsed time: 00:14:43s.  Time for last 1,000,000:    2s.  Last read position: chr17:45,468,487
INFO	2026-06-08 08:37:26	MarkDuplicates	Tracking 248287 as yet unmatched pairs. 19856 records in RAM.
INFO	2026-06-08 08:37:28	MarkDuplicates	Read   475,000,000 records.  Elapsed time: 00:14:45s.  Time for last 1,000,000:    1s.  Last read position: chr17:47,531,442
INFO	2026-06-08 08:37:28	MarkDuplicates	Tracking 248308 as yet unmatched pairs. 19875 records in RAM.
INFO	2026-06-08 08:37:29	MarkDuplicates	Read   476,000,000 records.  Elapsed time: 00:14:47s.  Time for last 1,000,000:    1s.  Last read position: chr17:48,543,500
INFO	2026-06-08 08:37:29	MarkDuplicates	Tracking 246793 as yet unmatched pairs. 18358 records in RAM.
INFO	2026-06-08 08:37:31	MarkDuplicates	Read   477,000,000 records.  Elapsed time: 00:14:49s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,990,602
INFO	2026-06-08 08:37:31	MarkDuplicates	Tracking 245368 as yet unmatched pairs. 16929 records in RAM.
INFO	2026-06-08 08:37:33	MarkDuplicates	Read   478,000,000 records.  Elapsed time: 00:14:50s.  Time for last 1,000,000:    1s.  Last read position: chr17:58,495,769
INFO	2026-06-08 08:37:33	MarkDuplicates	Tracking 244359 as yet unmatched pairs. 15919 records in RAM.
INFO	2026-06-08 08:37:35	MarkDuplicates	Read   479,000,000 records.  Elapsed time: 00:14:52s.  Time for last 1,000,000:    1s.  Last read position: chr17:59,838,056
INFO	2026-06-08 08:37:35	MarkDuplicates	Tracking 243225 as yet unmatched pairs. 14772 records in RAM.
INFO	2026-06-08 08:37:36	MarkDuplicates	Read   480,000,000 records.  Elapsed time: 00:14:54s.  Time for last 1,000,000:    1s.  Last read position: chr17:63,808,935
INFO	2026-06-08 08:37:36	MarkDuplicates	Tracking 242807 as yet unmatched pairs. 14348 records in RAM.
INFO	2026-06-08 08:37:38	MarkDuplicates	Read   481,000,000 records.  Elapsed time: 00:14:55s.  Time for last 1,000,000:    1s.  Last read position: chr17:67,078,230
INFO	2026-06-08 08:37:38	MarkDuplicates	Tracking 241198 as yet unmatched pairs. 12737 records in RAM.
INFO	2026-06-08 08:37:39	MarkDuplicates	Read   482,000,000 records.  Elapsed time: 00:14:57s.  Time for last 1,000,000:    1s.  Last read position: chr17:72,647,039
INFO	2026-06-08 08:37:39	MarkDuplicates	Tracking 240255 as yet unmatched pairs. 11787 records in RAM.
INFO	2026-06-08 08:37:41	MarkDuplicates	Read   483,000,000 records.  Elapsed time: 00:14:58s.  Time for last 1,000,000:    1s.  Last read position: chr17:75,489,377
INFO	2026-06-08 08:37:41	MarkDuplicates	Tracking 239530 as yet unmatched pairs. 11057 records in RAM.
INFO	2026-06-08 08:37:43	MarkDuplicates	Read   484,000,000 records.  Elapsed time: 00:15:00s.  Time for last 1,000,000:    1s.  Last read position: chr17:76,225,896
INFO	2026-06-08 08:37:43	MarkDuplicates	Tracking 238113 as yet unmatched pairs. 9640 records in RAM.
INFO	2026-06-08 08:37:44	MarkDuplicates	Read   485,000,000 records.  Elapsed time: 00:15:02s.  Time for last 1,000,000:    1s.  Last read position: chr17:78,086,906
INFO	2026-06-08 08:37:44	MarkDuplicates	Tracking 236388 as yet unmatched pairs. 7908 records in RAM.
INFO	2026-06-08 08:37:46	MarkDuplicates	Read   486,000,000 records.  Elapsed time: 00:15:03s.  Time for last 1,000,000:    1s.  Last read position: chr17:78,223,498
INFO	2026-06-08 08:37:46	MarkDuplicates	Tracking 235243 as yet unmatched pairs. 6763 records in RAM.
INFO	2026-06-08 08:37:48	MarkDuplicates	Read   487,000,000 records.  Elapsed time: 00:15:05s.  Time for last 1,000,000:    1s.  Last read position: chr17:80,339,775
INFO	2026-06-08 08:37:48	MarkDuplicates	Tracking 235388 as yet unmatched pairs. 6907 records in RAM.
INFO	2026-06-08 08:37:49	MarkDuplicates	Read   488,000,000 records.  Elapsed time: 00:15:06s.  Time for last 1,000,000:    1s.  Last read position: chr17:81,282,308
INFO	2026-06-08 08:37:49	MarkDuplicates	Tracking 233183 as yet unmatched pairs. 4698 records in RAM.
INFO	2026-06-08 08:37:51	MarkDuplicates	Read   489,000,000 records.  Elapsed time: 00:15:09s.  Time for last 1,000,000:    2s.  Last read position: chr17:81,869,524
INFO	2026-06-08 08:37:51	MarkDuplicates	Tracking 232420 as yet unmatched pairs. 3925 records in RAM.
INFO	2026-06-08 08:37:53	MarkDuplicates	Read   490,000,000 records.  Elapsed time: 00:15:10s.  Time for last 1,000,000:    1s.  Last read position: chr17:82,101,715
INFO	2026-06-08 08:37:53	MarkDuplicates	Tracking 230180 as yet unmatched pairs. 1683 records in RAM.
INFO	2026-06-08 08:37:55	MarkDuplicates	Read   491,000,000 records.  Elapsed time: 00:15:12s.  Time for last 1,000,000:    2s.  Last read position: chr18:2,574,982
INFO	2026-06-08 08:37:55	MarkDuplicates	Tracking 228397 as yet unmatched pairs. 8666 records in RAM.
INFO	2026-06-08 08:37:57	MarkDuplicates	Read   492,000,000 records.  Elapsed time: 00:15:14s.  Time for last 1,000,000:    1s.  Last read position: chr18:12,067,563
INFO	2026-06-08 08:37:57	MarkDuplicates	Tracking 227369 as yet unmatched pairs. 7636 records in RAM.
INFO	2026-06-08 08:37:59	MarkDuplicates	Read   493,000,000 records.  Elapsed time: 00:15:16s.  Time for last 1,000,000:    2s.  Last read position: chr18:23,561,374
INFO	2026-06-08 08:37:59	MarkDuplicates	Tracking 226464 as yet unmatched pairs. 6725 records in RAM.
INFO	2026-06-08 08:38:01	MarkDuplicates	Read   494,000,000 records.  Elapsed time: 00:15:18s.  Time for last 1,000,000:    1s.  Last read position: chr18:44,730,769
INFO	2026-06-08 08:38:01	MarkDuplicates	Tracking 225376 as yet unmatched pairs. 5633 records in RAM.
INFO	2026-06-08 08:38:02	MarkDuplicates	Read   495,000,000 records.  Elapsed time: 00:15:20s.  Time for last 1,000,000:    1s.  Last read position: chr18:51,067,079
INFO	2026-06-08 08:38:02	MarkDuplicates	Tracking 224395 as yet unmatched pairs. 4648 records in RAM.
INFO	2026-06-08 08:38:04	MarkDuplicates	Read   496,000,000 records.  Elapsed time: 00:15:21s.  Time for last 1,000,000:    1s.  Last read position: chr18:62,203,033
INFO	2026-06-08 08:38:04	MarkDuplicates	Tracking 223210 as yet unmatched pairs. 3463 records in RAM.
INFO	2026-06-08 08:38:05	MarkDuplicates	Read   497,000,000 records.  Elapsed time: 00:15:23s.  Time for last 1,000,000:    1s.  Last read position: chr18:63,318,444
INFO	2026-06-08 08:38:05	MarkDuplicates	Tracking 229447 as yet unmatched pairs. 9697 records in RAM.
INFO	2026-06-08 08:38:07	MarkDuplicates	Read   498,000,000 records.  Elapsed time: 00:15:24s.  Time for last 1,000,000:    1s.  Last read position: chr18:79,396,279
INFO	2026-06-08 08:38:07	MarkDuplicates	Tracking 220318 as yet unmatched pairs. 560 records in RAM.
INFO	2026-06-08 08:38:09	MarkDuplicates	Read   499,000,000 records.  Elapsed time: 00:15:27s.  Time for last 1,000,000:    2s.  Last read position: chr19:868,158
INFO	2026-06-08 08:38:09	MarkDuplicates	Tracking 219124 as yet unmatched pairs. 65580 records in RAM.
INFO	2026-06-08 08:38:11	MarkDuplicates	Read   500,000,000 records.  Elapsed time: 00:15:28s.  Time for last 1,000,000:    1s.  Last read position: chr19:1,081,856
INFO	2026-06-08 08:38:11	MarkDuplicates	Tracking 217820 as yet unmatched pairs. 64276 records in RAM.
INFO	2026-06-08 08:38:12	MarkDuplicates	Read   501,000,000 records.  Elapsed time: 00:15:30s.  Time for last 1,000,000:    1s.  Last read position: chr19:1,408,017
INFO	2026-06-08 08:38:12	MarkDuplicates	Tracking 215860 as yet unmatched pairs. 62315 records in RAM.
INFO	2026-06-08 08:40:11	MarkDuplicates	Read   502,000,000 records.  Elapsed time: 00:17:29s.  Time for last 1,000,000:  119s.  Last read position: chr19:1,879,944
INFO	2026-06-08 08:40:11	MarkDuplicates	Tracking 214219 as yet unmatched pairs. 60672 records in RAM.
INFO	2026-06-08 08:40:14	MarkDuplicates	Read   503,000,000 records.  Elapsed time: 00:17:31s.  Time for last 1,000,000:    2s.  Last read position: chr19:2,226,556
INFO	2026-06-08 08:40:14	MarkDuplicates	Tracking 213576 as yet unmatched pairs. 60028 records in RAM.
INFO	2026-06-08 08:40:15	MarkDuplicates	Read   504,000,000 records.  Elapsed time: 00:17:33s.  Time for last 1,000,000:    1s.  Last read position: chr19:3,053,895
INFO	2026-06-08 08:40:15	MarkDuplicates	Tracking 213272 as yet unmatched pairs. 59722 records in RAM.
INFO	2026-06-08 08:40:17	MarkDuplicates	Read   505,000,000 records.  Elapsed time: 00:17:35s.  Time for last 1,000,000:    1s.  Last read position: chr19:4,090,453
INFO	2026-06-08 08:40:17	MarkDuplicates	Tracking 209586 as yet unmatched pairs. 56030 records in RAM.
INFO	2026-06-08 08:40:19	MarkDuplicates	Read   506,000,000 records.  Elapsed time: 00:17:37s.  Time for last 1,000,000:    1s.  Last read position: chr19:4,910,849
INFO	2026-06-08 08:40:19	MarkDuplicates	Tracking 208365 as yet unmatched pairs. 54803 records in RAM.
INFO	2026-06-08 08:40:21	MarkDuplicates	Read   507,000,000 records.  Elapsed time: 00:17:38s.  Time for last 1,000,000:    1s.  Last read position: chr19:5,931,791
INFO	2026-06-08 08:40:21	MarkDuplicates	Tracking 206514 as yet unmatched pairs. 52950 records in RAM.
INFO	2026-06-08 08:40:22	MarkDuplicates	Read   508,000,000 records.  Elapsed time: 00:17:40s.  Time for last 1,000,000:    1s.  Last read position: chr19:6,828,639
INFO	2026-06-08 08:40:22	MarkDuplicates	Tracking 204794 as yet unmatched pairs. 51230 records in RAM.
INFO	2026-06-08 08:40:24	MarkDuplicates	Read   509,000,000 records.  Elapsed time: 00:17:41s.  Time for last 1,000,000:    1s.  Last read position: chr19:7,963,667
INFO	2026-06-08 08:40:24	MarkDuplicates	Tracking 203394 as yet unmatched pairs. 49825 records in RAM.
INFO	2026-06-08 08:40:26	MarkDuplicates	Read   510,000,000 records.  Elapsed time: 00:17:43s.  Time for last 1,000,000:    1s.  Last read position: chr19:10,113,762
INFO	2026-06-08 08:40:26	MarkDuplicates	Tracking 202626 as yet unmatched pairs. 49054 records in RAM.
INFO	2026-06-08 08:40:28	MarkDuplicates	Read   511,000,000 records.  Elapsed time: 00:17:45s.  Time for last 1,000,000:    2s.  Last read position: chr19:10,365,595
INFO	2026-06-08 08:40:28	MarkDuplicates	Tracking 201416 as yet unmatched pairs. 47842 records in RAM.
INFO	2026-06-08 08:40:29	MarkDuplicates	Read   512,000,000 records.  Elapsed time: 00:17:47s.  Time for last 1,000,000:    1s.  Last read position: chr19:10,984,167
INFO	2026-06-08 08:40:29	MarkDuplicates	Tracking 199735 as yet unmatched pairs. 46160 records in RAM.
INFO	2026-06-08 08:40:31	MarkDuplicates	Read   513,000,000 records.  Elapsed time: 00:17:48s.  Time for last 1,000,000:    1s.  Last read position: chr19:12,628,526
INFO	2026-06-08 08:40:31	MarkDuplicates	Tracking 198316 as yet unmatched pairs. 44739 records in RAM.
INFO	2026-06-08 08:40:33	MarkDuplicates	Read   514,000,000 records.  Elapsed time: 00:17:50s.  Time for last 1,000,000:    1s.  Last read position: chr19:12,952,848
INFO	2026-06-08 08:40:33	MarkDuplicates	Tracking 197108 as yet unmatched pairs. 43530 records in RAM.
INFO	2026-06-08 08:40:35	MarkDuplicates	Read   515,000,000 records.  Elapsed time: 00:17:52s.  Time for last 1,000,000:    2s.  Last read position: chr19:14,159,403
INFO	2026-06-08 08:40:35	MarkDuplicates	Tracking 195435 as yet unmatched pairs. 41850 records in RAM.
INFO	2026-06-08 08:40:36	MarkDuplicates	Read   516,000,000 records.  Elapsed time: 00:17:54s.  Time for last 1,000,000:    1s.  Last read position: chr19:15,243,404
INFO	2026-06-08 08:40:36	MarkDuplicates	Tracking 194564 as yet unmatched pairs. 40978 records in RAM.
INFO	2026-06-08 08:40:38	MarkDuplicates	Read   517,000,000 records.  Elapsed time: 00:17:56s.  Time for last 1,000,000:    2s.  Last read position: chr19:15,460,203
INFO	2026-06-08 08:40:38	MarkDuplicates	Tracking 192834 as yet unmatched pairs. 39248 records in RAM.
INFO	2026-06-08 08:40:41	MarkDuplicates	Read   518,000,000 records.  Elapsed time: 00:17:58s.  Time for last 1,000,000:    2s.  Last read position: chr19:17,194,669
INFO	2026-06-08 08:40:41	MarkDuplicates	Tracking 191809 as yet unmatched pairs. 38218 records in RAM.
INFO	2026-06-08 08:40:43	MarkDuplicates	Read   519,000,000 records.  Elapsed time: 00:18:00s.  Time for last 1,000,000:    2s.  Last read position: chr19:17,844,233
INFO	2026-06-08 08:40:43	MarkDuplicates	Tracking 190835 as yet unmatched pairs. 37240 records in RAM.
INFO	2026-06-08 08:40:45	MarkDuplicates	Read   520,000,000 records.  Elapsed time: 00:18:02s.  Time for last 1,000,000:    1s.  Last read position: chr19:18,461,615
INFO	2026-06-08 08:40:45	MarkDuplicates	Tracking 188596 as yet unmatched pairs. 34999 records in RAM.
INFO	2026-06-08 08:40:46	MarkDuplicates	Read   521,000,000 records.  Elapsed time: 00:18:04s.  Time for last 1,000,000:    1s.  Last read position: chr19:19,145,872
INFO	2026-06-08 08:40:46	MarkDuplicates	Tracking 187303 as yet unmatched pairs. 33706 records in RAM.
INFO	2026-06-08 08:40:48	MarkDuplicates	Read   522,000,000 records.  Elapsed time: 00:18:05s.  Time for last 1,000,000:    1s.  Last read position: chr19:19,712,742
INFO	2026-06-08 08:40:48	MarkDuplicates	Tracking 185275 as yet unmatched pairs. 31677 records in RAM.
INFO	2026-06-08 08:40:50	MarkDuplicates	Read   523,000,000 records.  Elapsed time: 00:18:07s.  Time for last 1,000,000:    1s.  Last read position: chr19:34,396,384
INFO	2026-06-08 08:40:50	MarkDuplicates	Tracking 184806 as yet unmatched pairs. 31197 records in RAM.
INFO	2026-06-08 08:40:51	MarkDuplicates	Read   524,000,000 records.  Elapsed time: 00:18:08s.  Time for last 1,000,000:    1s.  Last read position: chr19:35,631,384
INFO	2026-06-08 08:40:51	MarkDuplicates	Tracking 182602 as yet unmatched pairs. 28992 records in RAM.
INFO	2026-06-08 08:40:53	MarkDuplicates	Read   525,000,000 records.  Elapsed time: 00:18:10s.  Time for last 1,000,000:    1s.  Last read position: chr19:36,472,918
INFO	2026-06-08 08:40:53	MarkDuplicates	Tracking 180896 as yet unmatched pairs. 27283 records in RAM.
INFO	2026-06-08 08:40:54	MarkDuplicates	Read   526,000,000 records.  Elapsed time: 00:18:11s.  Time for last 1,000,000:    1s.  Last read position: chr19:38,624,175
INFO	2026-06-08 08:40:54	MarkDuplicates	Tracking 180711 as yet unmatched pairs. 27088 records in RAM.
INFO	2026-06-08 08:40:56	MarkDuplicates	Read   527,000,000 records.  Elapsed time: 00:18:13s.  Time for last 1,000,000:    1s.  Last read position: chr19:39,408,464
INFO	2026-06-08 08:40:56	MarkDuplicates	Tracking 179200 as yet unmatched pairs. 25576 records in RAM.
INFO	2026-06-08 08:40:57	MarkDuplicates	Read   528,000,000 records.  Elapsed time: 00:18:15s.  Time for last 1,000,000:    1s.  Last read position: chr19:40,236,346
INFO	2026-06-08 08:40:57	MarkDuplicates	Tracking 178719 as yet unmatched pairs. 25093 records in RAM.
INFO	2026-06-08 08:40:59	MarkDuplicates	Read   529,000,000 records.  Elapsed time: 00:18:16s.  Time for last 1,000,000:    1s.  Last read position: chr19:41,302,853
INFO	2026-06-08 08:40:59	MarkDuplicates	Tracking 177004 as yet unmatched pairs. 23378 records in RAM.
INFO	2026-06-08 08:41:00	MarkDuplicates	Read   530,000,000 records.  Elapsed time: 00:18:18s.  Time for last 1,000,000:    1s.  Last read position: chr19:42,022,286
INFO	2026-06-08 08:41:00	MarkDuplicates	Tracking 174811 as yet unmatched pairs. 21185 records in RAM.
INFO	2026-06-08 08:41:02	MarkDuplicates	Read   531,000,000 records.  Elapsed time: 00:18:20s.  Time for last 1,000,000:    1s.  Last read position: chr19:42,272,155
INFO	2026-06-08 08:41:02	MarkDuplicates	Tracking 176701 as yet unmatched pairs. 23075 records in RAM.
INFO	2026-06-08 08:41:04	MarkDuplicates	Read   532,000,000 records.  Elapsed time: 00:18:21s.  Time for last 1,000,000:    1s.  Last read position: chr19:42,293,703
INFO	2026-06-08 08:41:04	MarkDuplicates	Tracking 174146 as yet unmatched pairs. 20520 records in RAM.
INFO	2026-06-08 08:41:05	MarkDuplicates	Read   533,000,000 records.  Elapsed time: 00:18:23s.  Time for last 1,000,000:    1s.  Last read position: chr19:44,986,542
INFO	2026-06-08 08:41:05	MarkDuplicates	Tracking 170875 as yet unmatched pairs. 17230 records in RAM.
INFO	2026-06-08 08:41:07	MarkDuplicates	Read   534,000,000 records.  Elapsed time: 00:18:25s.  Time for last 1,000,000:    2s.  Last read position: chr19:45,698,562
INFO	2026-06-08 08:41:07	MarkDuplicates	Tracking 169369 as yet unmatched pairs. 15719 records in RAM.
INFO	2026-06-08 08:41:09	MarkDuplicates	Read   535,000,000 records.  Elapsed time: 00:18:26s.  Time for last 1,000,000:    1s.  Last read position: chr19:46,701,056
INFO	2026-06-08 08:41:09	MarkDuplicates	Tracking 168054 as yet unmatched pairs. 14402 records in RAM.
INFO	2026-06-08 08:41:11	MarkDuplicates	Read   536,000,000 records.  Elapsed time: 00:18:28s.  Time for last 1,000,000:    2s.  Last read position: chr19:47,493,470
INFO	2026-06-08 08:41:11	MarkDuplicates	Tracking 166543 as yet unmatched pairs. 12887 records in RAM.
INFO	2026-06-08 08:41:14	MarkDuplicates	Read   537,000,000 records.  Elapsed time: 00:18:31s.  Time for last 1,000,000:    2s.  Last read position: chr19:48,635,641
INFO	2026-06-08 08:41:14	MarkDuplicates	Tracking 165048 as yet unmatched pairs. 11378 records in RAM.
INFO	2026-06-08 08:41:16	MarkDuplicates	Read   538,000,000 records.  Elapsed time: 00:18:33s.  Time for last 1,000,000:    2s.  Last read position: chr19:49,468,497
INFO	2026-06-08 08:41:16	MarkDuplicates	Tracking 164492 as yet unmatched pairs. 10813 records in RAM.
INFO	2026-06-08 08:41:18	MarkDuplicates	Read   539,000,000 records.  Elapsed time: 00:18:35s.  Time for last 1,000,000:    1s.  Last read position: chr19:49,663,385
INFO	2026-06-08 08:41:18	MarkDuplicates	Tracking 162762 as yet unmatched pairs. 9082 records in RAM.
INFO	2026-06-08 08:41:19	MarkDuplicates	Read   540,000,000 records.  Elapsed time: 00:18:36s.  Time for last 1,000,000:    1s.  Last read position: chr19:49,929,350
INFO	2026-06-08 08:41:19	MarkDuplicates	Tracking 161221 as yet unmatched pairs. 7536 records in RAM.
INFO	2026-06-08 08:41:21	MarkDuplicates	Read   541,000,000 records.  Elapsed time: 00:18:38s.  Time for last 1,000,000:    1s.  Last read position: chr19:52,061,194
INFO	2026-06-08 08:41:21	MarkDuplicates	Tracking 159333 as yet unmatched pairs. 5647 records in RAM.
INFO	2026-06-08 08:41:22	MarkDuplicates	Read   542,000,000 records.  Elapsed time: 00:18:40s.  Time for last 1,000,000:    1s.  Last read position: chr19:54,453,555
INFO	2026-06-08 08:41:22	MarkDuplicates	Tracking 158877 as yet unmatched pairs. 5184 records in RAM.
INFO	2026-06-08 08:41:24	MarkDuplicates	Read   543,000,000 records.  Elapsed time: 00:18:42s.  Time for last 1,000,000:    1s.  Last read position: chr19:55,387,960
INFO	2026-06-08 08:41:24	MarkDuplicates	Tracking 161814 as yet unmatched pairs. 8102 records in RAM.
INFO	2026-06-08 08:41:26	MarkDuplicates	Read   544,000,000 records.  Elapsed time: 00:18:44s.  Time for last 1,000,000:    2s.  Last read position: chr19:56,310,324
INFO	2026-06-08 08:41:26	MarkDuplicates	Tracking 155182 as yet unmatched pairs. 1467 records in RAM.
INFO	2026-06-08 08:41:28	MarkDuplicates	Read   545,000,000 records.  Elapsed time: 00:18:45s.  Time for last 1,000,000:    1s.  Last read position: chr19:58,405,831
INFO	2026-06-08 08:41:28	MarkDuplicates	Tracking 154288 as yet unmatched pairs. 572 records in RAM.
INFO	2026-06-08 08:41:29	MarkDuplicates	Read   546,000,000 records.  Elapsed time: 00:18:47s.  Time for last 1,000,000:    1s.  Last read position: chr20:2,461,718
INFO	2026-06-08 08:41:29	MarkDuplicates	Tracking 153544 as yet unmatched pairs. 17173 records in RAM.
INFO	2026-06-08 08:41:31	MarkDuplicates	Read   547,000,000 records.  Elapsed time: 00:18:49s.  Time for last 1,000,000:    1s.  Last read position: chr20:5,127,067
INFO	2026-06-08 08:41:31	MarkDuplicates	Tracking 151563 as yet unmatched pairs. 15192 records in RAM.
INFO	2026-06-08 08:41:33	MarkDuplicates	Read   548,000,000 records.  Elapsed time: 00:18:50s.  Time for last 1,000,000:    1s.  Last read position: chr20:18,548,759
INFO	2026-06-08 08:41:33	MarkDuplicates	Tracking 150507 as yet unmatched pairs. 14135 records in RAM.
INFO	2026-06-08 08:41:35	MarkDuplicates	Read   549,000,000 records.  Elapsed time: 00:18:53s.  Time for last 1,000,000:    2s.  Last read position: chr20:32,303,303
INFO	2026-06-08 08:41:35	MarkDuplicates	Tracking 149374 as yet unmatched pairs. 12997 records in RAM.
INFO	2026-06-08 08:41:38	MarkDuplicates	Read   550,000,000 records.  Elapsed time: 00:18:55s.  Time for last 1,000,000:    2s.  Last read position: chr20:35,078,165
INFO	2026-06-08 08:41:38	MarkDuplicates	Tracking 148991 as yet unmatched pairs. 12614 records in RAM.
INFO	2026-06-08 08:41:39	MarkDuplicates	Read   551,000,000 records.  Elapsed time: 00:18:57s.  Time for last 1,000,000:    1s.  Last read position: chr20:36,612,106
INFO	2026-06-08 08:41:39	MarkDuplicates	Tracking 147474 as yet unmatched pairs. 11096 records in RAM.
INFO	2026-06-08 08:41:41	MarkDuplicates	Read   552,000,000 records.  Elapsed time: 00:18:58s.  Time for last 1,000,000:    1s.  Last read position: chr20:41,168,833
INFO	2026-06-08 08:41:41	MarkDuplicates	Tracking 146055 as yet unmatched pairs. 9675 records in RAM.
INFO	2026-06-08 08:41:42	MarkDuplicates	Read   553,000,000 records.  Elapsed time: 00:19:00s.  Time for last 1,000,000:    1s.  Last read position: chr20:45,792,004
INFO	2026-06-08 08:41:42	MarkDuplicates	Tracking 144886 as yet unmatched pairs. 8504 records in RAM.
INFO	2026-06-08 08:41:44	MarkDuplicates	Read   554,000,000 records.  Elapsed time: 00:19:01s.  Time for last 1,000,000:    1s.  Last read position: chr20:47,660,693
INFO	2026-06-08 08:41:44	MarkDuplicates	Tracking 143901 as yet unmatched pairs. 7517 records in RAM.
INFO	2026-06-08 08:41:46	MarkDuplicates	Read   555,000,000 records.  Elapsed time: 00:19:03s.  Time for last 1,000,000:    1s.  Last read position: chr20:50,574,330
INFO	2026-06-08 08:41:46	MarkDuplicates	Tracking 142885 as yet unmatched pairs. 6498 records in RAM.
INFO	2026-06-08 08:41:47	MarkDuplicates	Read   556,000,000 records.  Elapsed time: 00:19:05s.  Time for last 1,000,000:    1s.  Last read position: chr20:58,691,723
INFO	2026-06-08 08:41:47	MarkDuplicates	Tracking 141693 as yet unmatched pairs. 5301 records in RAM.
INFO	2026-06-08 08:41:49	MarkDuplicates	Read   557,000,000 records.  Elapsed time: 00:19:06s.  Time for last 1,000,000:    1s.  Last read position: chr20:62,314,936
INFO	2026-06-08 08:41:49	MarkDuplicates	Tracking 140318 as yet unmatched pairs. 3919 records in RAM.
INFO	2026-06-08 08:41:51	MarkDuplicates	Read   558,000,000 records.  Elapsed time: 00:19:08s.  Time for last 1,000,000:    1s.  Last read position: chr20:63,521,831
INFO	2026-06-08 08:41:51	MarkDuplicates	Tracking 139018 as yet unmatched pairs. 2615 records in RAM.
INFO	2026-06-08 08:41:52	MarkDuplicates	Read   559,000,000 records.  Elapsed time: 00:19:09s.  Time for last 1,000,000:    1s.  Last read position: chr20:63,930,916
INFO	2026-06-08 08:41:52	MarkDuplicates	Tracking 137226 as yet unmatched pairs. 821 records in RAM.
INFO	2026-06-08 08:41:54	MarkDuplicates	Read   560,000,000 records.  Elapsed time: 00:19:11s.  Time for last 1,000,000:    1s.  Last read position: chr21:5,141,256
INFO	2026-06-08 08:41:54	MarkDuplicates	Tracking 136228 as yet unmatched pairs. 41145 records in RAM.
INFO	2026-06-08 08:41:55	MarkDuplicates	Read   561,000,000 records.  Elapsed time: 00:19:12s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,210,349
INFO	2026-06-08 08:41:55	MarkDuplicates	Tracking 134801 as yet unmatched pairs. 39718 records in RAM.
INFO	2026-06-08 08:41:56	MarkDuplicates	Read   562,000,000 records.  Elapsed time: 00:19:13s.  Time for last 1,000,000:    0s.  Last read position: chr21:8,213,379
INFO	2026-06-08 08:41:56	MarkDuplicates	Tracking 134958 as yet unmatched pairs. 39875 records in RAM.
INFO	2026-06-08 08:41:57	MarkDuplicates	Read   563,000,000 records.  Elapsed time: 00:19:14s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,215,008
INFO	2026-06-08 08:41:57	MarkDuplicates	Tracking 133224 as yet unmatched pairs. 38141 records in RAM.
INFO	2026-06-08 08:41:59	MarkDuplicates	Read   564,000,000 records.  Elapsed time: 00:19:16s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,216,810
INFO	2026-06-08 08:41:59	MarkDuplicates	Tracking 130969 as yet unmatched pairs. 35848 records in RAM.
INFO	2026-06-08 08:42:00	MarkDuplicates	Read   565,000,000 records.  Elapsed time: 00:19:17s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,216,882
INFO	2026-06-08 08:42:00	MarkDuplicates	Tracking 133559 as yet unmatched pairs. 38434 records in RAM.
INFO	2026-06-08 08:42:01	MarkDuplicates	Read   566,000,000 records.  Elapsed time: 00:19:19s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,217,299
INFO	2026-06-08 08:42:01	MarkDuplicates	Tracking 129221 as yet unmatched pairs. 34092 records in RAM.
INFO	2026-06-08 08:42:02	MarkDuplicates	Read   567,000,000 records.  Elapsed time: 00:19:20s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,218,672
INFO	2026-06-08 08:42:02	MarkDuplicates	Tracking 124660 as yet unmatched pairs. 29531 records in RAM.
INFO	2026-06-08 08:42:04	MarkDuplicates	Read   568,000,000 records.  Elapsed time: 00:19:21s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,256,225
INFO	2026-06-08 08:42:04	MarkDuplicates	Tracking 123769 as yet unmatched pairs. 28639 records in RAM.
INFO	2026-06-08 08:42:05	MarkDuplicates	Read   569,000,000 records.  Elapsed time: 00:19:23s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,258,758
INFO	2026-06-08 08:42:05	MarkDuplicates	Tracking 123255 as yet unmatched pairs. 28125 records in RAM.
INFO	2026-06-08 08:42:07	MarkDuplicates	Read   570,000,000 records.  Elapsed time: 00:19:24s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,260,274
INFO	2026-06-08 08:42:07	MarkDuplicates	Tracking 122422 as yet unmatched pairs. 27292 records in RAM.
INFO	2026-06-08 08:42:08	MarkDuplicates	Read   571,000,000 records.  Elapsed time: 00:19:25s.  Time for last 1,000,000:    0s.  Last read position: chr21:8,393,955
INFO	2026-06-08 08:42:08	MarkDuplicates	Tracking 122259 as yet unmatched pairs. 27125 records in RAM.
INFO	2026-06-08 08:42:09	MarkDuplicates	Read   572,000,000 records.  Elapsed time: 00:19:26s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,396,841
INFO	2026-06-08 08:42:09	MarkDuplicates	Tracking 120605 as yet unmatched pairs. 25470 records in RAM.
INFO	2026-06-08 08:42:10	MarkDuplicates	Read   573,000,000 records.  Elapsed time: 00:19:28s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,399,082
INFO	2026-06-08 08:42:10	MarkDuplicates	Tracking 120784 as yet unmatched pairs. 25649 records in RAM.
INFO	2026-06-08 08:42:12	MarkDuplicates	Read   574,000,000 records.  Elapsed time: 00:19:29s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,399,882
INFO	2026-06-08 08:42:12	MarkDuplicates	Tracking 122170 as yet unmatched pairs. 27033 records in RAM.
INFO	2026-06-08 08:42:13	MarkDuplicates	Read   575,000,000 records.  Elapsed time: 00:19:31s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,400,138
INFO	2026-06-08 08:42:13	MarkDuplicates	Tracking 113887 as yet unmatched pairs. 18749 records in RAM.
INFO	2026-06-08 08:42:15	MarkDuplicates	Read   576,000,000 records.  Elapsed time: 00:19:32s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,401,683
INFO	2026-06-08 08:42:15	MarkDuplicates	Tracking 112355 as yet unmatched pairs. 17212 records in RAM.
INFO	2026-06-08 08:42:16	MarkDuplicates	Read   577,000,000 records.  Elapsed time: 00:19:33s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,439,072
INFO	2026-06-08 08:42:16	MarkDuplicates	Tracking 111485 as yet unmatched pairs. 16342 records in RAM.
INFO	2026-06-08 08:42:17	MarkDuplicates	Read   578,000,000 records.  Elapsed time: 00:19:35s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,440,836
INFO	2026-06-08 08:42:17	MarkDuplicates	Tracking 110964 as yet unmatched pairs. 15821 records in RAM.
INFO	2026-06-08 08:42:18	MarkDuplicates	Read   579,000,000 records.  Elapsed time: 00:19:36s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,442,041
INFO	2026-06-08 08:42:18	MarkDuplicates	Tracking 110560 as yet unmatched pairs. 15417 records in RAM.
INFO	2026-06-08 08:42:19	MarkDuplicates	Read   580,000,000 records.  Elapsed time: 00:19:37s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,444,070
INFO	2026-06-08 08:42:19	MarkDuplicates	Tracking 107756 as yet unmatched pairs. 12612 records in RAM.
INFO	2026-06-08 08:42:20	MarkDuplicates	Read   581,000,000 records.  Elapsed time: 00:19:38s.  Time for last 1,000,000:    0s.  Last read position: chr21:8,444,192
INFO	2026-06-08 08:42:20	MarkDuplicates	Tracking 107750 as yet unmatched pairs. 12606 records in RAM.
INFO	2026-06-08 08:42:21	MarkDuplicates	Read   582,000,000 records.  Elapsed time: 00:19:39s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,444,554
INFO	2026-06-08 08:42:21	MarkDuplicates	Tracking 138592 as yet unmatched pairs. 43447 records in RAM.
INFO	2026-06-08 08:42:23	MarkDuplicates	Read   583,000,000 records.  Elapsed time: 00:19:40s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,445,915
INFO	2026-06-08 08:42:23	MarkDuplicates	Tracking 104043 as yet unmatched pairs. 8897 records in RAM.
INFO	2026-06-08 08:42:25	MarkDuplicates	Read   584,000,000 records.  Elapsed time: 00:19:42s.  Time for last 1,000,000:    1s.  Last read position: chr21:29,024,679
INFO	2026-06-08 08:42:25	MarkDuplicates	Tracking 100719 as yet unmatched pairs. 5573 records in RAM.
INFO	2026-06-08 08:42:27	MarkDuplicates	Read   585,000,000 records.  Elapsed time: 00:19:44s.  Time for last 1,000,000:    1s.  Last read position: chr21:33,552,812
INFO	2026-06-08 08:42:27	MarkDuplicates	Tracking 100616 as yet unmatched pairs. 5469 records in RAM.
INFO	2026-06-08 08:42:28	MarkDuplicates	Read   586,000,000 records.  Elapsed time: 00:19:46s.  Time for last 1,000,000:    1s.  Last read position: chr21:39,391,805
INFO	2026-06-08 08:42:28	MarkDuplicates	Tracking 98733 as yet unmatched pairs. 3571 records in RAM.
INFO	2026-06-08 08:42:30	MarkDuplicates	Read   587,000,000 records.  Elapsed time: 00:19:47s.  Time for last 1,000,000:    1s.  Last read position: chr21:43,741,255
INFO	2026-06-08 08:42:30	MarkDuplicates	Tracking 97940 as yet unmatched pairs. 2777 records in RAM.
INFO	2026-06-08 08:42:31	MarkDuplicates	Read   588,000,000 records.  Elapsed time: 00:19:49s.  Time for last 1,000,000:    1s.  Last read position: chr21:44,326,182
INFO	2026-06-08 08:42:31	MarkDuplicates	Tracking 97831 as yet unmatched pairs. 2668 records in RAM.
INFO	2026-06-08 08:42:33	MarkDuplicates	Read   589,000,000 records.  Elapsed time: 00:19:50s.  Time for last 1,000,000:    1s.  Last read position: chr21:46,509,351
INFO	2026-06-08 08:42:33	MarkDuplicates	Tracking 95567 as yet unmatched pairs. 404 records in RAM.
INFO	2026-06-08 08:42:34	MarkDuplicates	Read   590,000,000 records.  Elapsed time: 00:19:52s.  Time for last 1,000,000:    1s.  Last read position: chr22:20,113,426
INFO	2026-06-08 08:42:34	MarkDuplicates	Tracking 94407 as yet unmatched pairs. 20178 records in RAM.
INFO	2026-06-08 08:42:36	MarkDuplicates	Read   591,000,000 records.  Elapsed time: 00:19:54s.  Time for last 1,000,000:    1s.  Last read position: chr22:22,288,764
INFO	2026-06-08 08:42:36	MarkDuplicates	Tracking 92740 as yet unmatched pairs. 18511 records in RAM.
INFO	2026-06-08 08:42:38	MarkDuplicates	Read   592,000,000 records.  Elapsed time: 00:19:55s.  Time for last 1,000,000:    1s.  Last read position: chr22:24,050,957
INFO	2026-06-08 08:42:38	MarkDuplicates	Tracking 91874 as yet unmatched pairs. 17642 records in RAM.
INFO	2026-06-08 08:42:39	MarkDuplicates	Read   593,000,000 records.  Elapsed time: 00:19:57s.  Time for last 1,000,000:    1s.  Last read position: chr22:28,800,298
INFO	2026-06-08 08:42:39	MarkDuplicates	Tracking 93947 as yet unmatched pairs. 19713 records in RAM.
INFO	2026-06-08 08:42:41	MarkDuplicates	Read   594,000,000 records.  Elapsed time: 00:19:58s.  Time for last 1,000,000:    1s.  Last read position: chr22:29,299,638
INFO	2026-06-08 08:42:41	MarkDuplicates	Tracking 91586 as yet unmatched pairs. 17352 records in RAM.
INFO	2026-06-08 08:42:43	MarkDuplicates	Read   595,000,000 records.  Elapsed time: 00:20:00s.  Time for last 1,000,000:    2s.  Last read position: chr22:31,463,852
INFO	2026-06-08 08:42:43	MarkDuplicates	Tracking 88304 as yet unmatched pairs. 14070 records in RAM.
INFO	2026-06-08 08:42:45	MarkDuplicates	Read   596,000,000 records.  Elapsed time: 00:20:02s.  Time for last 1,000,000:    1s.  Last read position: chr22:36,285,743
INFO	2026-06-08 08:42:45	MarkDuplicates	Tracking 87784 as yet unmatched pairs. 13549 records in RAM.
INFO	2026-06-08 08:42:47	MarkDuplicates	Read   597,000,000 records.  Elapsed time: 00:20:04s.  Time for last 1,000,000:    1s.  Last read position: chr22:37,127,771
INFO	2026-06-08 08:42:47	MarkDuplicates	Tracking 86889 as yet unmatched pairs. 12654 records in RAM.
INFO	2026-06-08 08:42:49	MarkDuplicates	Read   598,000,000 records.  Elapsed time: 00:20:06s.  Time for last 1,000,000:    2s.  Last read position: chr22:37,888,477
INFO	2026-06-08 08:42:49	MarkDuplicates	Tracking 84705 as yet unmatched pairs. 10470 records in RAM.
INFO	2026-06-08 08:42:50	MarkDuplicates	Read   599,000,000 records.  Elapsed time: 00:20:08s.  Time for last 1,000,000:    1s.  Last read position: chr22:38,908,851
INFO	2026-06-08 08:42:50	MarkDuplicates	Tracking 83213 as yet unmatched pairs. 8978 records in RAM.
INFO	2026-06-08 08:42:52	MarkDuplicates	Read   600,000,000 records.  Elapsed time: 00:20:09s.  Time for last 1,000,000:    1s.  Last read position: chr22:40,404,344
INFO	2026-06-08 08:42:52	MarkDuplicates	Tracking 82432 as yet unmatched pairs. 8190 records in RAM.
INFO	2026-06-08 08:42:54	MarkDuplicates	Read   601,000,000 records.  Elapsed time: 00:20:11s.  Time for last 1,000,000:    1s.  Last read position: chr22:41,636,522
INFO	2026-06-08 08:42:54	MarkDuplicates	Tracking 81370 as yet unmatched pairs. 7128 records in RAM.
INFO	2026-06-08 08:42:56	MarkDuplicates	Read   602,000,000 records.  Elapsed time: 00:20:13s.  Time for last 1,000,000:    1s.  Last read position: chr22:42,148,590
INFO	2026-06-08 08:42:56	MarkDuplicates	Tracking 80029 as yet unmatched pairs. 5787 records in RAM.
INFO	2026-06-08 08:42:57	MarkDuplicates	Read   603,000,000 records.  Elapsed time: 00:20:15s.  Time for last 1,000,000:    1s.  Last read position: chr22:45,718,447
INFO	2026-06-08 08:42:57	MarkDuplicates	Tracking 79146 as yet unmatched pairs. 4895 records in RAM.
INFO	2026-06-08 08:42:59	MarkDuplicates	Read   604,000,000 records.  Elapsed time: 00:20:16s.  Time for last 1,000,000:    1s.  Last read position: chr22:50,226,058
INFO	2026-06-08 08:42:59	MarkDuplicates	Tracking 77842 as yet unmatched pairs. 3591 records in RAM.
INFO	2026-06-08 08:43:01	MarkDuplicates	Read   605,000,000 records.  Elapsed time: 00:20:18s.  Time for last 1,000,000:    1s.  Last read position: chr22:50,463,409
INFO	2026-06-08 08:43:01	MarkDuplicates	Tracking 76316 as yet unmatched pairs. 2065 records in RAM.
INFO	2026-06-08 08:43:03	MarkDuplicates	Read   606,000,000 records.  Elapsed time: 00:20:21s.  Time for last 1,000,000:    2s.  Last read position: chrX:314,199
INFO	2026-06-08 08:43:03	MarkDuplicates	Tracking 74366 as yet unmatched pairs. 17337 records in RAM.
INFO	2026-06-08 08:43:05	MarkDuplicates	Read   607,000,000 records.  Elapsed time: 00:20:22s.  Time for last 1,000,000:    1s.  Last read position: chrX:9,654,258
INFO	2026-06-08 08:43:05	MarkDuplicates	Tracking 72990 as yet unmatched pairs. 15961 records in RAM.
INFO	2026-06-08 08:43:06	MarkDuplicates	Read   608,000,000 records.  Elapsed time: 00:20:24s.  Time for last 1,000,000:    1s.  Last read position: chrX:19,631,925
INFO	2026-06-08 08:43:06	MarkDuplicates	Tracking 72402 as yet unmatched pairs. 15340 records in RAM.
INFO	2026-06-08 08:43:08	MarkDuplicates	Read   609,000,000 records.  Elapsed time: 00:20:25s.  Time for last 1,000,000:    1s.  Last read position: chrX:40,057,297
INFO	2026-06-08 08:43:08	MarkDuplicates	Tracking 71380 as yet unmatched pairs. 14313 records in RAM.
INFO	2026-06-08 08:43:09	MarkDuplicates	Read   610,000,000 records.  Elapsed time: 00:20:27s.  Time for last 1,000,000:    1s.  Last read position: chrX:46,547,566
INFO	2026-06-08 08:43:09	MarkDuplicates	Tracking 70075 as yet unmatched pairs. 13008 records in RAM.
INFO	2026-06-08 08:43:11	MarkDuplicates	Read   611,000,000 records.  Elapsed time: 00:20:28s.  Time for last 1,000,000:    1s.  Last read position: chrX:48,600,366
INFO	2026-06-08 08:43:11	MarkDuplicates	Tracking 69793 as yet unmatched pairs. 12726 records in RAM.
INFO	2026-06-08 08:43:12	MarkDuplicates	Read   612,000,000 records.  Elapsed time: 00:20:30s.  Time for last 1,000,000:    1s.  Last read position: chrX:51,844,448
INFO	2026-06-08 08:43:12	MarkDuplicates	Tracking 67686 as yet unmatched pairs. 10619 records in RAM.
INFO	2026-06-08 08:43:14	MarkDuplicates	Read   613,000,000 records.  Elapsed time: 00:20:31s.  Time for last 1,000,000:    1s.  Last read position: chrX:53,593,463
INFO	2026-06-08 08:43:14	MarkDuplicates	Tracking 67863 as yet unmatched pairs. 10796 records in RAM.
INFO	2026-06-08 08:43:16	MarkDuplicates	Read   614,000,000 records.  Elapsed time: 00:20:33s.  Time for last 1,000,000:    1s.  Last read position: chrX:65,731,936
INFO	2026-06-08 08:43:16	MarkDuplicates	Tracking 65997 as yet unmatched pairs. 8929 records in RAM.
INFO	2026-06-08 08:43:17	MarkDuplicates	Read   615,000,000 records.  Elapsed time: 00:20:35s.  Time for last 1,000,000:    1s.  Last read position: chrX:71,545,245
INFO	2026-06-08 08:43:17	MarkDuplicates	Tracking 64945 as yet unmatched pairs. 7874 records in RAM.
INFO	2026-06-08 08:43:19	MarkDuplicates	Read   616,000,000 records.  Elapsed time: 00:20:36s.  Time for last 1,000,000:    1s.  Last read position: chrX:77,663,473
INFO	2026-06-08 08:43:19	MarkDuplicates	Tracking 64727 as yet unmatched pairs. 7656 records in RAM.
INFO	2026-06-08 08:43:21	MarkDuplicates	Read   617,000,000 records.  Elapsed time: 00:20:38s.  Time for last 1,000,000:    1s.  Last read position: chrX:101,246,240
INFO	2026-06-08 08:43:21	MarkDuplicates	Tracking 63182 as yet unmatched pairs. 6111 records in RAM.
INFO	2026-06-08 08:43:22	MarkDuplicates	Read   618,000,000 records.  Elapsed time: 00:20:40s.  Time for last 1,000,000:    1s.  Last read position: chrX:119,574,707
INFO	2026-06-08 08:43:22	MarkDuplicates	Tracking 63351 as yet unmatched pairs. 6280 records in RAM.
INFO	2026-06-08 08:43:24	MarkDuplicates	Read   619,000,000 records.  Elapsed time: 00:20:41s.  Time for last 1,000,000:    1s.  Last read position: chrX:130,163,366
INFO	2026-06-08 08:43:24	MarkDuplicates	Tracking 61518 as yet unmatched pairs. 4446 records in RAM.
INFO	2026-06-08 08:43:26	MarkDuplicates	Read   620,000,000 records.  Elapsed time: 00:20:43s.  Time for last 1,000,000:    1s.  Last read position: chrX:150,987,247
INFO	2026-06-08 08:43:26	MarkDuplicates	Tracking 60525 as yet unmatched pairs. 3449 records in RAM.
INFO	2026-06-08 08:43:28	MarkDuplicates	Read   621,000,000 records.  Elapsed time: 00:20:45s.  Time for last 1,000,000:    2s.  Last read position: chrX:154,019,710
INFO	2026-06-08 08:43:28	MarkDuplicates	Tracking 59453 as yet unmatched pairs. 2377 records in RAM.
INFO	2026-06-08 08:43:30	MarkDuplicates	Read   622,000,000 records.  Elapsed time: 00:20:47s.  Time for last 1,000,000:    1s.  Last read position: chrX:154,467,976
INFO	2026-06-08 08:43:30	MarkDuplicates	Tracking 57857 as yet unmatched pairs. 780 records in RAM.
INFO	2026-06-08 08:43:31	MarkDuplicates	Read   623,000,000 records.  Elapsed time: 00:20:48s.  Time for last 1,000,000:    1s.  Last read position: chrY:13,264,960
INFO	2026-06-08 08:43:31	MarkDuplicates	Tracking 56985 as yet unmatched pairs. 604 records in RAM.
INFO	2026-06-08 08:43:33	MarkDuplicates	Read   624,000,000 records.  Elapsed time: 00:20:51s.  Time for last 1,000,000:    2s.  Last read position: chrM:12,563
INFO	2026-06-08 08:43:33	MarkDuplicates	Tracking 56131 as yet unmatched pairs. 121 records in RAM.
INFO	2026-06-08 08:43:35	MarkDuplicates	Read   625,000,000 records.  Elapsed time: 00:20:52s.  Time for last 1,000,000:    1s.  Last read position: GL000220.1:111,203
INFO	2026-06-08 08:43:35	MarkDuplicates	Tracking 55336 as yet unmatched pairs. 7742 records in RAM.
INFO	2026-06-08 08:43:36	MarkDuplicates	Read   626,000,000 records.  Elapsed time: 00:20:53s.  Time for last 1,000,000:    1s.  Last read position: GL000220.1:112,968
INFO	2026-06-08 08:43:36	MarkDuplicates	Tracking 54089 as yet unmatched pairs. 6495 records in RAM.
INFO	2026-06-08 08:43:37	MarkDuplicates	Read   627,000,000 records.  Elapsed time: 00:20:54s.  Time for last 1,000,000:    1s.  Last read position: GL000220.1:114,201
INFO	2026-06-08 08:43:37	MarkDuplicates	Tracking 54037 as yet unmatched pairs. 6443 records in RAM.
INFO	2026-06-08 08:43:38	MarkDuplicates	Read   628,000,000 records.  Elapsed time: 00:20:55s.  Time for last 1,000,000:    1s.  Last read position: GL000220.1:116,264
INFO	2026-06-08 08:43:38	MarkDuplicates	Tracking 48122 as yet unmatched pairs. 527 records in RAM.
INFO	2026-06-08 08:43:39	MarkDuplicates	Read   629,000,000 records.  Elapsed time: 00:20:57s.  Time for last 1,000,000:    1s.  Last read position: GL000220.1:116,366
INFO	2026-06-08 08:43:39	MarkDuplicates	Tracking 48148 as yet unmatched pairs. 553 records in RAM.
INFO	2026-06-08 08:43:40	MarkDuplicates	Read   630,000,000 records.  Elapsed time: 00:20:58s.  Time for last 1,000,000:    1s.  Last read position: GL000220.1:116,765
INFO	2026-06-08 08:43:40	MarkDuplicates	Tracking 48252 as yet unmatched pairs. 657 records in RAM.
INFO	2026-06-08 08:43:41	MarkDuplicates	Read   631,000,000 records.  Elapsed time: 00:20:59s.  Time for last 1,000,000:    0s.  Last read position: GL000220.1:151,741
INFO	2026-06-08 08:43:41	MarkDuplicates	Tracking 48194 as yet unmatched pairs. 599 records in RAM.
INFO	2026-06-08 08:43:42	MarkDuplicates	Read   632,000,000 records.  Elapsed time: 00:21:00s.  Time for last 1,000,000:    0s.  Last read position: GL000220.1:156,580
INFO	2026-06-08 08:43:42	MarkDuplicates	Tracking 48159 as yet unmatched pairs. 564 records in RAM.
INFO	2026-06-08 08:43:43	MarkDuplicates	Read   633,000,000 records.  Elapsed time: 00:21:01s.  Time for last 1,000,000:    0s.  Last read position: GL000220.1:158,083
INFO	2026-06-08 08:43:43	MarkDuplicates	Tracking 48113 as yet unmatched pairs. 518 records in RAM.
INFO	2026-06-08 08:43:44	MarkDuplicates	Read   634,000,000 records.  Elapsed time: 00:21:02s.  Time for last 1,000,000:    1s.  Last read position: GL000220.1:159,457
INFO	2026-06-08 08:43:44	MarkDuplicates	Tracking 47981 as yet unmatched pairs. 386 records in RAM.
INFO	2026-06-08 08:43:45	MarkDuplicates	Read   635,000,000 records.  Elapsed time: 00:21:03s.  Time for last 1,000,000:    0s.  Last read position: GL000220.1:160,291
INFO	2026-06-08 08:43:45	MarkDuplicates	Tracking 47721 as yet unmatched pairs. 126 records in RAM.
INFO	2026-06-08 08:43:46	MarkDuplicates	Read   636,000,000 records.  Elapsed time: 00:21:04s.  Time for last 1,000,000:    1s.  Last read position: GL000220.1:160,570
INFO	2026-06-08 08:43:46	MarkDuplicates	Tracking 47644 as yet unmatched pairs. 49 records in RAM.
INFO	2026-06-08 08:43:47	MarkDuplicates	Read   637,000,000 records.  Elapsed time: 00:21:05s.  Time for last 1,000,000:    0s.  Last read position: KI270721.1:8,031
INFO	2026-06-08 08:43:47	MarkDuplicates	Tracking 47714 as yet unmatched pairs. 132 records in RAM.
INFO	2026-06-08 08:43:49	MarkDuplicates	Read   638,000,000 records.  Elapsed time: 00:21:06s.  Time for last 1,000,000:    1s.  Last read position: KI270733.1:128,168
INFO	2026-06-08 08:43:49	MarkDuplicates	Tracking 47227 as yet unmatched pairs. 47218 records in RAM.
INFO	2026-06-08 08:43:50	MarkDuplicates	Read   639,000,000 records.  Elapsed time: 00:21:07s.  Time for last 1,000,000:    1s.  Last read position: KI270733.1:129,622
INFO	2026-06-08 08:43:50	MarkDuplicates	Tracking 46894 as yet unmatched pairs. 46885 records in RAM.
INFO	2026-06-08 08:43:51	MarkDuplicates	Read   640,000,000 records.  Elapsed time: 00:21:08s.  Time for last 1,000,000:    1s.  Last read position: KI270733.1:129,947
INFO	2026-06-08 08:43:51	MarkDuplicates	Tracking 48347 as yet unmatched pairs. 48338 records in RAM.
INFO	2026-06-08 08:43:52	MarkDuplicates	Read   641,000,000 records.  Elapsed time: 00:21:10s.  Time for last 1,000,000:    1s.  Last read position: KI270733.1:131,292
INFO	2026-06-08 08:43:52	MarkDuplicates	Tracking 40406 as yet unmatched pairs. 40397 records in RAM.
INFO	2026-06-08 08:43:54	MarkDuplicates	Read   642,000,000 records.  Elapsed time: 00:21:11s.  Time for last 1,000,000:    1s.  Last read position: KI270733.1:133,167
INFO	2026-06-08 08:43:54	MarkDuplicates	Tracking 36153 as yet unmatched pairs. 36144 records in RAM.
INFO	2026-06-08 08:43:55	MarkDuplicates	Read   643,000,000 records.  Elapsed time: 00:21:13s.  Time for last 1,000,000:    1s.  Last read position: KI270733.1:133,256
INFO	2026-06-08 08:43:55	MarkDuplicates	Tracking 35563 as yet unmatched pairs. 35554 records in RAM.
INFO	2026-06-08 08:43:58	MarkDuplicates	Read   644,000,000 records.  Elapsed time: 00:21:15s.  Time for last 1,000,000:    2s.  Last read position: KI270733.1:133,667
INFO	2026-06-08 08:43:58	MarkDuplicates	Tracking 32185 as yet unmatched pairs. 32176 records in RAM.
INFO	2026-06-08 08:43:59	MarkDuplicates	Read   645,000,000 records.  Elapsed time: 00:21:16s.  Time for last 1,000,000:    1s.  Last read position: KI270733.1:170,474
INFO	2026-06-08 08:43:59	MarkDuplicates	Tracking 31370 as yet unmatched pairs. 31361 records in RAM.
INFO	2026-06-08 08:44:00	MarkDuplicates	Read   646,000,000 records.  Elapsed time: 00:21:18s.  Time for last 1,000,000:    1s.  Last read position: KI270733.1:173,537
INFO	2026-06-08 08:44:00	MarkDuplicates	Tracking 27597 as yet unmatched pairs. 27588 records in RAM.
INFO	2026-06-08 08:44:02	MarkDuplicates	Read   647,000,000 records.  Elapsed time: 00:21:20s.  Time for last 1,000,000:    1s.  Last read position: KI270733.1:174,717
INFO	2026-06-08 08:44:02	MarkDuplicates	Tracking 16934 as yet unmatched pairs. 16925 records in RAM.
INFO	2026-06-08 08:44:04	MarkDuplicates	Read   648,000,000 records.  Elapsed time: 00:21:21s.  Time for last 1,000,000:    1s.  Last read position: KI270733.1:175,204
INFO	2026-06-08 08:44:04	MarkDuplicates	Tracking 432 as yet unmatched pairs. 423 records in RAM.
INFO	2026-06-08 08:44:05	MarkDuplicates	Read   649,000,000 records.  Elapsed time: 00:21:23s.  Time for last 1,000,000:    1s.  Last read position: KI270733.1:176,409
INFO	2026-06-08 08:44:05	MarkDuplicates	Tracking 364 as yet unmatched pairs. 355 records in RAM.
INFO	2026-06-08 08:44:06	MarkDuplicates	Read   650,000,000 records.  Elapsed time: 00:21:24s.  Time for last 1,000,000:    1s.  Last read position: KI270733.1:178,248
INFO	2026-06-08 08:44:06	MarkDuplicates	Tracking 151 as yet unmatched pairs. 142 records in RAM.
INFO	2026-06-08 08:44:08	MarkDuplicates	Read   651,000,000 records.  Elapsed time: 00:21:25s.  Time for last 1,000,000:    1s.  Last read position: KI270733.1:178,421
INFO	2026-06-08 08:44:08	MarkDuplicates	Tracking 74 as yet unmatched pairs. 65 records in RAM.
INFO	2026-06-08 08:44:09	MarkDuplicates	Read   652,000,000 records.  Elapsed time: 00:21:26s.  Time for last 1,000,000:    1s.  Last read position: KI270733.1:178,797
INFO	2026-06-08 08:44:09	MarkDuplicates	Tracking 16 as yet unmatched pairs. 7 records in RAM.
INFO	2026-06-08 08:44:09	MarkDuplicates	Read 652170772 records. 0 pairs never matched.
INFO	2026-06-08 08:44:48	MarkDuplicates	After buildSortedReadEndLists freeMemory: 204137960; totalMemory: 234881024; maxMemory: 63585648640
INFO	2026-06-08 08:44:48	MarkDuplicates	Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO	2026-06-08 08:44:52	MarkDuplicates	Traversing read pair information and detecting duplicates.
WARNING	2026-06-08 08:44:52	SortingCollection	There is not enough memory per file for buffering. Reading will be unbuffered.
INFO	2026-06-08 08:45:01	OpticalDuplicateFinder	Large duplicate set. size = 1599
INFO	2026-06-08 08:45:01	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:18,871
INFO	2026-06-08 08:45:01	OpticalDuplicateFinder	Large duplicate set. size = 1883
INFO	2026-06-08 08:45:01	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:8,232
INFO	2026-06-08 08:45:01	OpticalDuplicateFinder	Large duplicate set. size = 2564
INFO	2026-06-08 08:45:01	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-23,593
INFO	2026-06-08 08:45:01	OpticalDuplicateFinder	compared         2,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-32,726
INFO	2026-06-08 08:45:01	OpticalDuplicateFinder	Large duplicate set. size = 1720
INFO	2026-06-08 08:45:01	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:14,899
INFO	2026-06-08 08:45:14	OpticalDuplicateFinder	Large duplicate set. size = 1546
INFO	2026-06-08 08:45:14	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-14,936
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	Large duplicate set. size = 1309
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:32,446
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	Large duplicate set. size = 1680
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-30,048
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	Large duplicate set. size = 1411
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:21,476
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	Large duplicate set. size = 1347
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:11,768
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	Large duplicate set. size = 1074
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-14,637
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	Large duplicate set. size = 1201
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-23,342
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	Large duplicate set. size = 1251
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-19,483
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	Large duplicate set. size = 1677
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-14,596
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	Large duplicate set. size = 1400
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:22,212
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	Large duplicate set. size = 1292
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-13,618
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	Large duplicate set. size = 1011
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-29,992
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	Large duplicate set. size = 1011
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-31,618
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	Large duplicate set. size = 1316
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-22,080
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	Large duplicate set. size = 1813
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:17,520
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	Large duplicate set. size = 1454
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:3,225
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	Large duplicate set. size = 1282
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:13,677
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	Large duplicate set. size = 1035
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:4,454
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	Large duplicate set. size = 1052
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:15,400
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	Large duplicate set. size = 1438
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-27,718
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	Large duplicate set. size = 1199
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-15,964
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	Large duplicate set. size = 1561
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:21,411
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	Large duplicate set. size = 2032
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:31,645
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	compared         2,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:23,377
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	Large duplicate set. size = 1799
INFO	2026-06-08 08:45:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:11,121
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	Large duplicate set. size = 1067
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:18,005
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	Large duplicate set. size = 1602
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:28,870
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	Large duplicate set. size = 2230
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:12,091
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	compared         2,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-24,749
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	Large duplicate set. size = 1747
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:14,891
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	Large duplicate set. size = 1687
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:21,840
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	Large duplicate set. size = 2122
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:16,169
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	compared         2,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:2,683
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	Large duplicate set. size = 1738
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-31,140
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	Large duplicate set. size = 1164
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-29,757
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	Large duplicate set. size = 1064
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:28,700
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	Large duplicate set. size = 1618
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-18,884
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	Large duplicate set. size = 1179
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:26,217
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	Large duplicate set. size = 1066
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:28,749
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	Large duplicate set. size = 1029
INFO	2026-06-08 08:45:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:14,308
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 1092
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-28,091
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 1009
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:19,453
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 2296
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:14,899
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         2,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:17,949
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 1094
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-25,267
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 1023
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-24,879
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 1207
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:7,974
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 3349
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:21,710
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         2,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:3,969
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         3,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:14,696
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 1029
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:24,299
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 1091
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:11,007
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 1708
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-32,403
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 1567
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-24,070
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 2552
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:23,320
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         2,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-25,308
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 3520
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:6,720
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         2,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-21,724
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         3,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-19,612
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 2968
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:23,935
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         2,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-25,033
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 1066
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-30,331
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 1026
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-18,763
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 1831
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:18,677
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 1494
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:8,483
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 1933
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-14,702
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 1697
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:19,785
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 1073
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-31,626
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 1087
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:13,281
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 1043
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:29,064
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 1243
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:3,144
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 1166
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-24,151
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 1251
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:12,302
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 1279
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-21,174
INFO	2026-06-08 08:45:45	OpticalDuplicateFinder	Large duplicate set. size = 1180
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-15,810
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	Large duplicate set. size = 1253
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-13,399
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	Large duplicate set. size = 1385
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:21,492
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	Large duplicate set. size = 1896
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:28,603
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	Large duplicate set. size = 1121
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-27,969
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	Large duplicate set. size = 1335
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:13,928
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	Large duplicate set. size = 1181
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-14,338
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	Large duplicate set. size = 1024
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:9,988
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	Large duplicate set. size = 1521
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-14,143
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	Large duplicate set. size = 1659
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:14,688
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	Large duplicate set. size = 1118
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:11,169
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	Large duplicate set. size = 1150
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-27,104
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	Large duplicate set. size = 2231
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:5,935
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	compared         2,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:15,700
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	Large duplicate set. size = 1340
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:22,309
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	Large duplicate set. size = 1078
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:25,893
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	Large duplicate set. size = 1315
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:8,475
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	Large duplicate set. size = 1609
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:15,400
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	Large duplicate set. size = 1019
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:21,613
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	Large duplicate set. size = 1115
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:2,011
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	Large duplicate set. size = 1063
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:19,372
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	Large duplicate set. size = 2384
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:6,121
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	compared         2,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:22,657
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	Large duplicate set. size = 1588
INFO	2026-06-08 08:45:46	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:17,358
INFO	2026-06-08 08:46:27	OpticalDuplicateFinder	Large duplicate set. size = 1028
INFO	2026-06-08 08:46:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-27,751
INFO	2026-06-08 08:46:27	OpticalDuplicateFinder	Large duplicate set. size = 1106
INFO	2026-06-08 08:46:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:18,677
INFO	2026-06-08 08:46:27	OpticalDuplicateFinder	Large duplicate set. size = 1048
INFO	2026-06-08 08:46:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:32,333
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	Large duplicate set. size = 1033
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:14,324
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	Large duplicate set. size = 1121
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:4,738
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	Large duplicate set. size = 1292
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-16,231
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	Large duplicate set. size = 1256
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:30,860
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	Large duplicate set. size = 1255
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:5,814
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	Large duplicate set. size = 1114
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:2,885
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	Large duplicate set. size = 1337
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:28,911
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	Large duplicate set. size = 1302
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:15,060
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	Large duplicate set. size = 1543
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-32,289
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	Large duplicate set. size = 1014
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:2,707
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	Large duplicate set. size = 1524
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:18,887
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	Large duplicate set. size = 1347
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:7,650
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	Large duplicate set. size = 1547
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:21,257
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	Large duplicate set. size = 1285
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:5,725
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	Large duplicate set. size = 3574
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:24,809
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	compared         2,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:2,747
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	compared         3,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:20,044
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	Large duplicate set. size = 1091
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:7,868
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	Large duplicate set. size = 1954
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:29,436
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	Large duplicate set. size = 1360
INFO	2026-06-08 08:46:28	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:7,504
INFO	2026-06-08 08:46:34	OpticalDuplicateFinder	Large duplicate set. size = 1197
INFO	2026-06-08 08:46:34	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:30,116
INFO	2026-06-08 08:46:34	OpticalDuplicateFinder	Large duplicate set. size = 1009
INFO	2026-06-08 08:46:34	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-17,355
INFO	2026-06-08 08:46:34	OpticalDuplicateFinder	Large duplicate set. size = 1130
INFO	2026-06-08 08:46:34	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:2,238
INFO	2026-06-08 08:46:34	OpticalDuplicateFinder	Large duplicate set. size = 2569
INFO	2026-06-08 08:46:34	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-31,780
INFO	2026-06-08 08:46:34	OpticalDuplicateFinder	compared         2,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-17,889
INFO	2026-06-08 08:46:34	OpticalDuplicateFinder	Large duplicate set. size = 1478
INFO	2026-06-08 08:46:34	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:26,742
INFO	2026-06-08 08:46:34	OpticalDuplicateFinder	Large duplicate set. size = 1254
INFO	2026-06-08 08:46:34	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:9,640
INFO	2026-06-08 08:46:35	OpticalDuplicateFinder	Large duplicate set. size = 1147
INFO	2026-06-08 08:46:35	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:18,588
INFO	2026-06-08 08:46:35	OpticalDuplicateFinder	Large duplicate set. size = 1447
INFO	2026-06-08 08:46:35	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:2,780
INFO	2026-06-08 08:46:35	OpticalDuplicateFinder	Large duplicate set. size = 1973
INFO	2026-06-08 08:46:35	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:17,593
INFO	2026-06-08 08:46:35	OpticalDuplicateFinder	Large duplicate set. size = 2382
INFO	2026-06-08 08:46:35	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:4,689
INFO	2026-06-08 08:46:35	OpticalDuplicateFinder	compared         2,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-32,265
INFO	2026-06-08 08:46:35	OpticalDuplicateFinder	Large duplicate set. size = 1405
INFO	2026-06-08 08:46:35	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:6,979
INFO	2026-06-08 08:46:35	OpticalDuplicateFinder	Large duplicate set. size = 1042
INFO	2026-06-08 08:46:35	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-23,479
INFO	2026-06-08 08:46:35	OpticalDuplicateFinder	Large duplicate set. size = 1170
INFO	2026-06-08 08:46:35	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-16,813
INFO	2026-06-08 08:46:35	OpticalDuplicateFinder	Large duplicate set. size = 1156
INFO	2026-06-08 08:46:35	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:3,743
INFO	2026-06-08 08:46:35	OpticalDuplicateFinder	Large duplicate set. size = 1433
INFO	2026-06-08 08:46:35	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:19,494
INFO	2026-06-08 08:46:35	MarkDuplicates	Traversing fragment information and detecting duplicates.
WARNING	2026-06-08 08:46:35	SortingCollection	There is not enough memory per file for buffering. Reading will be unbuffered.
INFO	2026-06-08 08:47:39	MarkDuplicates	Sorting list of duplicate records.
INFO	2026-06-08 08:47:44	MarkDuplicates	After generateDuplicateIndexes freeMemory: 203888536; totalMemory: 234881024; maxMemory: 63585648640
INFO	2026-06-08 08:47:44	MarkDuplicates	Marking 362964800 records as duplicates.
INFO	2026-06-08 08:47:44	MarkDuplicates	Found 24941212 optical duplicate clusters.
INFO	2026-06-08 08:47:44	MarkDuplicates	Reads are assumed to be ordered by: coordinate
INFO	2026-06-08 08:48:01	MarkDuplicates	Written    10,000,000 records.  Elapsed time: 00:00:16s.  Time for last 10,000,000:   16s.  Last read position: chr1:25,245,199
INFO	2026-06-08 08:48:17	MarkDuplicates	Written    20,000,000 records.  Elapsed time: 00:00:33s.  Time for last 10,000,000:   16s.  Last read position: chr1:47,373,556
INFO	2026-06-08 08:48:34	MarkDuplicates	Written    30,000,000 records.  Elapsed time: 00:00:49s.  Time for last 10,000,000:   16s.  Last read position: chr1:146,984,134
INFO	2026-06-08 08:48:50	MarkDuplicates	Written    40,000,000 records.  Elapsed time: 00:01:05s.  Time for last 10,000,000:   16s.  Last read position: chr1:160,619,839
INFO	2026-06-08 08:49:07	MarkDuplicates	Written    50,000,000 records.  Elapsed time: 00:01:22s.  Time for last 10,000,000:   16s.  Last read position: chr1:220,151,319
INFO	2026-06-08 08:49:23	MarkDuplicates	Written    60,000,000 records.  Elapsed time: 00:01:38s.  Time for last 10,000,000:   16s.  Last read position: chr2:32,916,254
INFO	2026-06-08 08:49:39	MarkDuplicates	Written    70,000,000 records.  Elapsed time: 00:01:54s.  Time for last 10,000,000:   15s.  Last read position: chr2:74,165,261
INFO	2026-06-08 08:49:55	MarkDuplicates	Written    80,000,000 records.  Elapsed time: 00:02:10s.  Time for last 10,000,000:   16s.  Last read position: chr2:159,748,103
INFO	2026-06-08 08:50:12	MarkDuplicates	Written    90,000,000 records.  Elapsed time: 00:02:27s.  Time for last 10,000,000:   16s.  Last read position: chr2:230,444,255
INFO	2026-06-08 08:50:28	MarkDuplicates	Written   100,000,000 records.  Elapsed time: 00:02:43s.  Time for last 10,000,000:   16s.  Last read position: chr3:39,410,760
INFO	2026-06-08 08:50:44	MarkDuplicates	Written   110,000,000 records.  Elapsed time: 00:02:59s.  Time for last 10,000,000:   16s.  Last read position: chr3:101,585,439
INFO	2026-06-08 08:51:00	MarkDuplicates	Written   120,000,000 records.  Elapsed time: 00:03:16s.  Time for last 10,000,000:   16s.  Last read position: chr3:184,174,922
INFO	2026-06-08 08:51:17	MarkDuplicates	Written   130,000,000 records.  Elapsed time: 00:03:32s.  Time for last 10,000,000:   16s.  Last read position: chr4:56,345,281
INFO	2026-06-08 08:51:33	MarkDuplicates	Written   140,000,000 records.  Elapsed time: 00:03:48s.  Time for last 10,000,000:   16s.  Last read position: chr5:1,344,723
INFO	2026-06-08 08:51:50	MarkDuplicates	Written   150,000,000 records.  Elapsed time: 00:04:05s.  Time for last 10,000,000:   16s.  Last read position: chr5:109,378,917
INFO	2026-06-08 08:52:06	MarkDuplicates	Written   160,000,000 records.  Elapsed time: 00:04:21s.  Time for last 10,000,000:   16s.  Last read position: chr5:154,399,463
INFO	2026-06-08 08:52:22	MarkDuplicates	Written   170,000,000 records.  Elapsed time: 00:04:37s.  Time for last 10,000,000:   16s.  Last read position: chr6:15,251,872
INFO	2026-06-08 08:52:38	MarkDuplicates	Written   180,000,000 records.  Elapsed time: 00:04:53s.  Time for last 10,000,000:   15s.  Last read position: chr6:33,069,864
INFO	2026-06-08 08:52:54	MarkDuplicates	Written   190,000,000 records.  Elapsed time: 00:05:09s.  Time for last 10,000,000:   16s.  Last read position: chr6:87,257,173
INFO	2026-06-08 08:53:10	MarkDuplicates	Written   200,000,000 records.  Elapsed time: 00:05:26s.  Time for last 10,000,000:   16s.  Last read position: chr7:1,010,039
INFO	2026-06-08 08:53:27	MarkDuplicates	Written   210,000,000 records.  Elapsed time: 00:05:42s.  Time for last 10,000,000:   16s.  Last read position: chr7:65,873,376
INFO	2026-06-08 08:53:43	MarkDuplicates	Written   220,000,000 records.  Elapsed time: 00:05:58s.  Time for last 10,000,000:   16s.  Last read position: chr7:102,540,041
INFO	2026-06-08 08:53:59	MarkDuplicates	Written   230,000,000 records.  Elapsed time: 00:06:14s.  Time for last 10,000,000:   16s.  Last read position: chr7:155,711,439
INFO	2026-06-08 08:54:16	MarkDuplicates	Written   240,000,000 records.  Elapsed time: 00:06:31s.  Time for last 10,000,000:   16s.  Last read position: chr8:80,099,814
INFO	2026-06-08 08:54:32	MarkDuplicates	Written   250,000,000 records.  Elapsed time: 00:06:47s.  Time for last 10,000,000:   16s.  Last read position: chr9:396,862
INFO	2026-06-08 08:54:48	MarkDuplicates	Written   260,000,000 records.  Elapsed time: 00:07:03s.  Time for last 10,000,000:   16s.  Last read position: chr9:92,229,013
INFO	2026-06-08 08:55:05	MarkDuplicates	Written   270,000,000 records.  Elapsed time: 00:07:20s.  Time for last 10,000,000:   16s.  Last read position: chr9:132,327,332
INFO	2026-06-08 08:55:21	MarkDuplicates	Written   280,000,000 records.  Elapsed time: 00:07:36s.  Time for last 10,000,000:   16s.  Last read position: chr10:48,709,716
INFO	2026-06-08 08:55:38	MarkDuplicates	Written   290,000,000 records.  Elapsed time: 00:07:53s.  Time for last 10,000,000:   16s.  Last read position: chr10:102,395,888
INFO	2026-06-08 08:55:54	MarkDuplicates	Written   300,000,000 records.  Elapsed time: 00:08:09s.  Time for last 10,000,000:   16s.  Last read position: chr11:22,236,247
INFO	2026-06-08 08:56:10	MarkDuplicates	Written   310,000,000 records.  Elapsed time: 00:08:25s.  Time for last 10,000,000:   16s.  Last read position: chr11:65,128,437
INFO	2026-06-08 08:56:27	MarkDuplicates	Written   320,000,000 records.  Elapsed time: 00:08:42s.  Time for last 10,000,000:   16s.  Last read position: chr11:85,971,782
INFO	2026-06-08 08:56:44	MarkDuplicates	Written   330,000,000 records.  Elapsed time: 00:08:59s.  Time for last 10,000,000:   16s.  Last read position: chr12:9,695,311
INFO	2026-06-08 08:57:00	MarkDuplicates	Written   340,000,000 records.  Elapsed time: 00:09:16s.  Time for last 10,000,000:   16s.  Last read position: chr12:55,789,115
INFO	2026-06-08 08:57:17	MarkDuplicates	Written   350,000,000 records.  Elapsed time: 00:09:32s.  Time for last 10,000,000:   16s.  Last read position: chr12:108,641,590
INFO	2026-06-08 08:57:33	MarkDuplicates	Written   360,000,000 records.  Elapsed time: 00:09:49s.  Time for last 10,000,000:   16s.  Last read position: chr13:20,084,136
INFO	2026-06-08 08:57:50	MarkDuplicates	Written   370,000,000 records.  Elapsed time: 00:10:05s.  Time for last 10,000,000:   16s.  Last read position: chr14:23,565,644
INFO	2026-06-08 08:58:06	MarkDuplicates	Written   380,000,000 records.  Elapsed time: 00:10:21s.  Time for last 10,000,000:   15s.  Last read position: chr14:60,149,449
INFO	2026-06-08 08:58:22	MarkDuplicates	Written   390,000,000 records.  Elapsed time: 00:10:37s.  Time for last 10,000,000:   16s.  Last read position: chr14:105,625,875
INFO	2026-06-08 08:58:39	MarkDuplicates	Written   400,000,000 records.  Elapsed time: 00:10:54s.  Time for last 10,000,000:   16s.  Last read position: chr15:56,184,020
INFO	2026-06-08 08:58:55	MarkDuplicates	Written   410,000,000 records.  Elapsed time: 00:11:10s.  Time for last 10,000,000:   16s.  Last read position: chr15:90,426,248
INFO	2026-06-08 08:59:11	MarkDuplicates	Written   420,000,000 records.  Elapsed time: 00:11:26s.  Time for last 10,000,000:   16s.  Last read position: chr16:12,397,054
INFO	2026-06-08 08:59:28	MarkDuplicates	Written   430,000,000 records.  Elapsed time: 00:11:43s.  Time for last 10,000,000:   16s.  Last read position: chr16:28,383,185
INFO	2026-06-08 08:59:44	MarkDuplicates	Written   440,000,000 records.  Elapsed time: 00:11:59s.  Time for last 10,000,000:   16s.  Last read position: chr16:57,025,793
INFO	2026-06-08 09:00:01	MarkDuplicates	Written   450,000,000 records.  Elapsed time: 00:12:16s.  Time for last 10,000,000:   16s.  Last read position: chr16:89,524,101
INFO	2026-06-08 09:00:17	MarkDuplicates	Written   460,000,000 records.  Elapsed time: 00:12:32s.  Time for last 10,000,000:   16s.  Last read position: chr17:17,751,634
INFO	2026-06-08 09:00:34	MarkDuplicates	Written   470,000,000 records.  Elapsed time: 00:12:49s.  Time for last 10,000,000:   16s.  Last read position: chr17:40,406,567
INFO	2026-06-08 09:00:50	MarkDuplicates	Written   480,000,000 records.  Elapsed time: 00:13:05s.  Time for last 10,000,000:   16s.  Last read position: chr17:63,808,935
INFO	2026-06-08 09:01:06	MarkDuplicates	Written   490,000,000 records.  Elapsed time: 00:13:21s.  Time for last 10,000,000:   16s.  Last read position: chr17:82,101,715
INFO	2026-06-08 09:01:22	MarkDuplicates	Written   500,000,000 records.  Elapsed time: 00:13:37s.  Time for last 10,000,000:   16s.  Last read position: chr19:1,081,856
INFO	2026-06-08 09:01:38	MarkDuplicates	Written   510,000,000 records.  Elapsed time: 00:13:53s.  Time for last 10,000,000:   15s.  Last read position: chr19:10,113,762
INFO	2026-06-08 09:01:54	MarkDuplicates	Written   520,000,000 records.  Elapsed time: 00:14:09s.  Time for last 10,000,000:   16s.  Last read position: chr19:18,461,615
INFO	2026-06-08 09:02:10	MarkDuplicates	Written   530,000,000 records.  Elapsed time: 00:14:26s.  Time for last 10,000,000:   16s.  Last read position: chr19:42,022,286
INFO	2026-06-08 09:02:26	MarkDuplicates	Written   540,000,000 records.  Elapsed time: 00:14:41s.  Time for last 10,000,000:   15s.  Last read position: chr19:49,929,350
INFO	2026-06-08 09:02:42	MarkDuplicates	Written   550,000,000 records.  Elapsed time: 00:14:57s.  Time for last 10,000,000:   15s.  Last read position: chr20:35,078,165
INFO	2026-06-08 09:02:58	MarkDuplicates	Written   560,000,000 records.  Elapsed time: 00:15:13s.  Time for last 10,000,000:   16s.  Last read position: chr21:5,141,256
INFO	2026-06-08 09:03:12	MarkDuplicates	Written   570,000,000 records.  Elapsed time: 00:15:27s.  Time for last 10,000,000:   14s.  Last read position: chr21:8,260,274
INFO	2026-06-08 09:03:26	MarkDuplicates	Written   580,000,000 records.  Elapsed time: 00:15:41s.  Time for last 10,000,000:   14s.  Last read position: chr21:8,444,070
INFO	2026-06-08 09:03:42	MarkDuplicates	Written   590,000,000 records.  Elapsed time: 00:15:57s.  Time for last 10,000,000:   15s.  Last read position: chr22:20,113,426
INFO	2026-06-08 09:03:58	MarkDuplicates	Written   600,000,000 records.  Elapsed time: 00:16:13s.  Time for last 10,000,000:   16s.  Last read position: chr22:40,404,344
INFO	2026-06-08 09:04:14	MarkDuplicates	Written   610,000,000 records.  Elapsed time: 00:16:29s.  Time for last 10,000,000:   15s.  Last read position: chrX:46,547,566
INFO	2026-06-08 09:04:30	MarkDuplicates	Written   620,000,000 records.  Elapsed time: 00:16:45s.  Time for last 10,000,000:   16s.  Last read position: chrX:150,987,247
INFO	2026-06-08 09:04:47	MarkDuplicates	Written   630,000,000 records.  Elapsed time: 00:17:02s.  Time for last 10,000,000:   16s.  Last read position: GL000220.1:116,765
INFO	2026-06-08 09:05:01	MarkDuplicates	Written   640,000,000 records.  Elapsed time: 00:17:16s.  Time for last 10,000,000:   14s.  Last read position: KI270733.1:129,947
INFO	2026-06-08 09:05:15	MarkDuplicates	Written   650,000,000 records.  Elapsed time: 00:17:31s.  Time for last 10,000,000:   14s.  Last read position: KI270733.1:178,248
INFO	2026-06-08 09:05:31	MarkDuplicates	Writing complete. Closing input iterator.
INFO	2026-06-08 09:05:31	MarkDuplicates	Duplicate Index cleanup.
INFO	2026-06-08 09:05:31	MarkDuplicates	Getting Memory Stats.
INFO	2026-06-08 09:05:31	MarkDuplicates	Before output close freeMemory: 203839256; totalMemory: 234881024; maxMemory: 63585648640
INFO	2026-06-08 09:05:31	MarkDuplicates	Closed outputs. Getting more Memory Stats.
INFO	2026-06-08 09:05:31	MarkDuplicates	After output close freeMemory: 104089520; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:05:31 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 42.85 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory