.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_INDEX_ALIGNMENT_CRAM (GM24385_0001_RNA_0001_23H5VFLT4_s16)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/bee1df7c4187ae1b828a34596686a5/.command.log
Size: 511 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_INDEX_ALIGNMENT_CRAM (GM24385_0001_RNA_0001_23H5VFLT4_s16)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/bee1df7c4187ae1b828a34596686a5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/dbbf26965ed46f315fa70c55e19062/GM24385_0001_RNA_0001_23H5VFLT4_s16.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/bee1df7c4187ae1b828a34596686a5/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory