Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/42714a2da9de9f68f196a07b83a733/tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/9055d4b0da3d2fb2a1c6cf662c7616/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/d2939e466465998f2a2a0e9c99215f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/d2939e466465998f2a2a0e9c99215f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/470633ec6875aa44e851b44cd7b6c7/tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 149792469
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	149792469
Known Splicing Events:	147895451
Partial Novel Splicing Events:	910701
Novel Splicing Events:	895347
Filtered Splicing Events:	90970

Total splicing  Junctions:	309396
Known Splicing Junctions:	204111
Partial Novel Splicing Junctions:	44303
Novel Splicing Junctions:	60982

===================================================================
Create BED file ...
Create Interact file ...