File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/d418b2fea478b73e7b631790d83992/.command.out
Size
1.8 KB
Attempt
  AIH curated blacklist: matched 10 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 243
  Pass (FILTER=PASS): 15 (6.2%)
  Fail (FILTER=FAIL): 228 (93.8%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 10
  All 10 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high): 76
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 36
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 16
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 14
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 12
  confidence_below_min(low<high): 10
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 10
  confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 9
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 6
  confidence_below_min(medium<high);aih_curated_blacklist: 6
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 5
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 5
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 5
  confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 4
  confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 3

Breakdown by confidence:
  high: 15 pass, 6 fail (total: 21)
  low: 0 pass, 112 fail (total: 112)
  medium: 0 pass, 110 fail (total: 110)
Arriba filter: 243 rows -> 15 PASS; wrote tih_rna_sample_00419_23H5VFLT4_s44.arriba.fusions.filtered.tsv and tih_rna_sample_00419_23H5VFLT4_s44.arriba.fusions.filtered_pass_only.tsv
Summary written to: tih_rna_sample_00419_23H5VFLT4_s44.arriba.fusions.filter_summary.txt