#!/bin/bash -euo pipefail
contamination_to_multiqc.py \
    "tih_rna_sample_00394_23H5VFLT4_s25.predictions.csv" \
    --output "tih_rna_sample_00394_23H5VFLT4_s25_contamination_mqc.tsv" \
    --sample-id "tih_rna_sample_00394_23H5VFLT4_s25"

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:CONTAMINATION_TO_MULTIQC":
    python: $(python3 --version | sed 's/Python //g')
    contamination_to_multiqc: 1.0.0
END_VERSIONS