File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/cb88c0d88b9e537fdee15d9179e557/.command.log
Size
729 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (tih_rna_sample_00121_23H5VFLT4_s41)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/cb88c0d88b9e537fdee15d9179e557/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/07c0be7a46f394f4d611a06dbc8f1c/tih_rna_sample_00121_23H5VFLT4_s41.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/cb88c0d88b9e537fdee15d9179e557/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  tih_rna_sample_00121_23H5VFLT4_s41: vaf_p90=1.000000 -> CLEAN

Output saved to: tih_rna_sample_00121_23H5VFLT4_s41.predictions.csv
Summary: 0/1 samples flagged as contaminated