Done.
-parsing GTF file: /tmp/nxf.tlK9bTyVIh/tih_rna_sample_00087_23H5VFLT4_s17.gtf
* Running CMD: /usr/local/bin/STAR  --runThreadN 8  --genomeDir /tmp/nxf.tlK9bTyVIh/ctat_genome_lib_build_dir/ref_genome.fa.star.idx  --outSAMtype BAM SortedByCoordinate  --twopassMode None  --alignSJDBoverhangMin 10  --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705  --alignInsertionFlush Right   --alignMatesGapMax 100000  --alignIntronMax 100000  --outSAMattributes All  --readFilesIn /tmp/nxf.tlK9bTyVIh/tih_rna_sample_00087_23H5VFLT4_s17_1.fastp.fastq.gz /tmp/nxf.tlK9bTyVIh/tih_rna_sample_00087_23H5VFLT4_s17_2.fastp.fastq.gz  --genomeFastaFiles /tmp/nxf.tlK9bTyVIh/fi_workdir/tih_rna_sample_00087_23H5VFLT4_s17.fa  --outSAMfilter KeepAllAddedReferences  --sjdbGTFfile /tmp/nxf.tlK9bTyVIh/fi_workdir/tih_rna_sample_00087_23H5VFLT4_s17.gtf  --alignSJstitchMismatchNmax 5 -1 5 5  --scoreGapNoncan -6  --readFilesCommand 'gunzip -c' 
* Running CMD: mv Aligned.sortedByCoord.out.bam tih_rna_sample_00087_23H5VFLT4_s17.star.sortedByCoord.out.bam
* Running CMD: samtools index tih_rna_sample_00087_23H5VFLT4_s17.star.sortedByCoord.out.bam
11:02:28 : INFO : Done.
-parsing GTF file: /tmp/nxf.tlK9bTyVIh/fi_workdir/tih_rna_sample_00087_23H5VFLT4_s17.gtf
-parsing /tmp/nxf.tlK9bTyVIh/fi_workdir/tih_rna_sample_00087_23H5VFLT4_s17.star.cSorted.dupsMarked.bam

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[4100000]   -done parsing /tmp/nxf.tlK9bTyVIh/fi_workdir/tih_rna_sample_00087_23H5VFLT4_s17.star.cSorted.dupsMarked.bam.  Extracting junction info.
junction read elimination tally: $VAR1 = {
          'exons hit < 2' => 15,
          'num genes matched < 2' => 103,
          'excessive soft clipping' => 40607,
          'num_hits: 6 != num_counted_on_fusion_contigs 5 ' => 15,
          'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 118,
          'num_hits: 4 != num_counted_on_fusion_contigs 3 ' => 48,
          'per_id < 96' => 21779,
          'small anchor length' => 217,
          'low complexity anchor region' => 8,
          'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 522,
          'num_hits: 5 != num_counted_on_fusion_contigs 1 ' => 1,
          ' ** passed ** ' => 33677,
          'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 1149,
          'num_hits: 4 != num_counted_on_fusion_contigs 1 ' => 2,
          'num_hits: 5 != num_counted_on_fusion_contigs 3 ' => 3,
          'seq-similar region overlap' => 4,
          'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 54,
          'num_hits: 5 != num_counted_on_fusion_contigs 4 ' => 36
        };
-writing fusion junction support info.
-outputting the spanning read info: /tmp/nxf.tlK9bTyVIh/fi_workdir/tih_rna_sample_00087_23H5VFLT4_s17.star.cSorted.dupsMarked.bam.fusion_spanning_info.
 - counting read alignments among fusion contigs.

[1000]   -fusion SPANNING read extraction for scaff: AC004923.1--AC127526.2

[1000]   
[2000]   -fusion SPANNING read extraction for scaff: AC026341.1--GAP43

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[23000]   -fusion SPANNING read extraction for scaff: AC079781.4--ASNS

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[4000]   -fusion SPANNING read extraction for scaff: AC090572.2--CNBD1

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[19000]   -fusion SPANNING read extraction for scaff: AC092807.3--DDAH1

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[63000]   -fusion SPANNING read extraction for scaff: AC138409.2--NAIP

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[53000]   -fusion SPANNING read extraction for scaff: AL512590.2--CCDC180

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[9000]   -fusion SPANNING read extraction for scaff: AP006294.2--ENPP7P3

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[13000]   -fusion SPANNING read extraction for scaff: AP006294.2--LINC00665

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[77000]   -fusion SPANNING read extraction for scaff: B4GALT4--IGSF11

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[29000]   -fusion SPANNING read extraction for scaff: C1QTNF7-AS1--LINC00504

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[4000]   -fusion SPANNING read extraction for scaff: CCDC169--SOHLH2

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[2900000]   
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[2902000]   
[2903000]   
[2904000]   
[2905000]   
[2906000]   
[2907000]   -fusion SPANNING read extraction for scaff: COL1A1--SLC45A4

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   -fusion SPANNING read extraction for scaff: GOLGA6L10--GOLGA2P6

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   -fusion SPANNING read extraction for scaff: GTF2A1L--STON1-GTF2A1L

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   -fusion SPANNING read extraction for scaff: MARVELD2--OCLN

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   -fusion SPANNING read extraction for scaff: PCDHA4--PCDHAC1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   -fusion SPANNING read extraction for scaff: PCDHA4--PCDHAC2

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   -fusion SPANNING read extraction for scaff: PCDHA4--PCDHA13

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   -fusion SPANNING read extraction for scaff: PCDHA6--PCDHA13

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   -fusion SPANNING read extraction for scaff: PCDHA6--PCDHAC1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   -fusion SPANNING read extraction for scaff: PCDHA6--PCDHAC2

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA8

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB6

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA11

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
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[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC3

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC4

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC5

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA9

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA12

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB7

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
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[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA10

[1000]   
[2000]   -fusion SPANNING read extraction for scaff: RPS27P14--OCLN

[1000]   
[2000]   
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[5000]   
[6000]   
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[8000]   
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[176000]   
[177000]   -fusion SPANNING read extraction for scaff: SFRP4--EPDR1

[1000]   
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[42000]   
[43000]   -fusion SPANNING read extraction for scaff: STON1--GTF2A1L

[1000]   
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[92000]   -fusion SPANNING read extraction for scaff: STX16--NPEPL1

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[139000]   -fusion SPANNING read extraction for scaff: THRAP3P2--SLCO3A1

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[39000]   -fusion SPANNING read extraction for scaff: TLK2--AC240565.1

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[8000]   -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1

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[44000]   -fusion SPANNING read extraction for scaff: TVP23C--CDRT4

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[58000]   -fusion SPANNING read extraction for scaff: UPK1B--IGSF11
-filtered reads reasons: $VAR1 = {
          'lacks exon overlap' => 34739,
          'seq similar region alignment' => 14253
        };
EM: Starting log likelihood: -12928.963378
EM: Round [1] log likelihood: -12926.062386
EM: Round [2] log likelihood: -12925.976261
EM: Round [3] log likelihood: -12925.937083
EM: Round [4] log likelihood: -12925.915402
EM: Round [5] log likelihood: -12925.901927
EM: Round [6] log likelihood: -12925.892470
EM: Round [7] log likelihood: -12925.885019
EM: Round [8] log likelihood: -12925.878582
EM: Round [9] log likelihood: -12925.872668
EM: Round [10] log likelihood: -12925.867031
EM: Round [11] log likelihood: -12925.861548
EM: Round [12] log likelihood: -12925.856158
EM: Round [13] log likelihood: -12925.850831
EM: Round [14] log likelihood: -12925.845550
EM: Round [15] log likelihood: -12925.840307
EM: Round [16] log likelihood: -12925.835099
EM: Round [17] log likelihood: -12925.829923
EM: Round [18] log likelihood: -12925.824778
EM: Round [19] log likelihood: -12925.819663
EM: Round [20] log likelihood: -12925.814578
EM: Round [21] log likelihood: -12925.809521
EM: Round [22] log likelihood: -12925.804494
EM: Round [23] log likelihood: -12925.799494
EM: Round [24] log likelihood: -12925.794523
EM: Round [25] log likelihood: -12925.789580
EM: Round [26] log likelihood: -12925.784664
EM: Round [27] log likelihood: -12925.779775
EM: Round [28] log likelihood: -12925.774913
EM: Round [29] log likelihood: -12925.770077
EM: Round [30] log likelihood: -12925.765268
EM: Round [31] log likelihood: -12925.760485
EM: Round [32] log likelihood: -12925.755728
EM: Round [33] log likelihood: -12925.750997
EM: Round [34] log likelihood: -12925.746290
EM: Round [35] log likelihood: -12925.741609
EM: Round [36] log likelihood: -12925.736952
EM: Round [37] log likelihood: -12925.732320
EM: Round [38] log likelihood: -12925.727713
EM: Round [39] log likelihood: -12925.723129
EM: Round [40] log likelihood: -12925.718569
EM: Round [41] log likelihood: -12925.714033
EM: Round [42] log likelihood: -12925.709520
EM: Round [43] log likelihood: -12925.705031
EM: Round [44] log likelihood: -12925.700564
EM: Round [45] log likelihood: -12925.696120
EM: Round [46] log likelihood: -12925.691698
EM: Round [47] log likelihood: -12925.687299
EM: Round [48] log likelihood: -12925.682922
EM: Round [49] log likelihood: -12925.678566
EM: Round [50] log likelihood: -12925.674233
EM: Round [51] log likelihood: -12925.669920
EM: Round [52] log likelihood: -12925.665629
EM: Round [53] log likelihood: -12925.661359
EM: Round [54] log likelihood: -12925.657110
EM: Round [55] log likelihood: -12925.652882
EM: Round [56] log likelihood: -12925.648674
EM: Round [57] log likelihood: -12925.644486
EM: Round [58] log likelihood: -12925.640319
EM: Round [59] log likelihood: -12925.636171
EM: Round [60] log likelihood: -12925.632043
EM: Round [61] log likelihood: -12925.627935
EM: Round [62] log likelihood: -12925.623846
EM: Round [63] log likelihood: -12925.619777
EM: Round [64] log likelihood: -12925.615726
EM: Round [65] log likelihood: -12925.611695
EM: Round [66] log likelihood: -12925.607682
EM: Round [67] log likelihood: -12925.603688
EM: Round [68] log likelihood: -12925.599712
EM: Round [69] log likelihood: -12925.595755
EM: Round [70] log likelihood: -12925.591815
EM: Round [71] log likelihood: -12925.587894
EM: Round [72] log likelihood: -12925.583990
EM: Round [73] log likelihood: -12925.580104
EM: Round [74] log likelihood: -12925.576236
EM: Round [75] log likelihood: -12925.572385
EM: Round [76] log likelihood: -12925.568551
EM: Round [77] log likelihood: -12925.564734
EM: Round [78] log likelihood: -12925.560934
EM: Round [79] log likelihood: -12925.557151
EM: Round [80] log likelihood: -12925.553385
EM: Round [81] log likelihood: -12925.549635
EM: Round [82] log likelihood: -12925.545902
EM: Round [83] log likelihood: -12925.542184
EM: Round [84] log likelihood: -12925.538483
EM: Round [85] log likelihood: -12925.534798
EM: Round [86] log likelihood: -12925.531129
EM: Round [87] log likelihood: -12925.527476
EM: Round [88] log likelihood: -12925.523838
EM: Round [89] log likelihood: -12925.520216
EM: Round [90] log likelihood: -12925.516609
EM: Round [91] log likelihood: -12925.513017
EM: Round [92] log likelihood: -12925.509440
EM: Round [93] log likelihood: -12925.505879
EM: Round [94] log likelihood: -12925.502332
EM: Round [95] log likelihood: -12925.498800
EM: Round [96] log likelihood: -12925.495283
EM: Round [97] log likelihood: -12925.491781
EM: Round [98] log likelihood: -12925.488293
EM: Round [99] log likelihood: -12925.484819
EM: Round [100] log likelihood: -12925.481359
EM: Round [101] log likelihood: -12925.477914
EM: Round [102] log likelihood: -12925.474482
EM: Round [103] log likelihood: -12925.471065
EM: Round [104] log likelihood: -12925.467661
EM: Round [105] log likelihood: -12925.464271
EM: Round [106] log likelihood: -12925.460895
EM: Round [107] log likelihood: -12925.457532
EM: Round [108] log likelihood: -12925.454183
EM: Round [109] log likelihood: -12925.450847
EM: Round [110] log likelihood: -12925.447524
EM: Round [111] log likelihood: -12925.444214
EM: Round [112] log likelihood: -12925.440917
EM: Round [113] log likelihood: -12925.437633
EM: Round [114] log likelihood: -12925.434362
EM: Round [115] log likelihood: -12925.431104
EM: Round [116] log likelihood: -12925.427858
EM: Round [117] log likelihood: -12925.424625
EM: Round [118] log likelihood: -12925.421405
EM: Round [119] log likelihood: -12925.418197
EM: Round [120] log likelihood: -12925.415001
EM: Round [121] log likelihood: -12925.411817
EM: Round [122] log likelihood: -12925.408646
EM: Round [123] log likelihood: -12925.405486
EM: Round [124] log likelihood: -12925.402339
EM: Round [125] log likelihood: -12925.399203
EM: Round [126] log likelihood: -12925.396079
EM: Round [127] log likelihood: -12925.392967
EM: Round [128] log likelihood: -12925.389867
EM: Round [129] log likelihood: -12925.386778
EM: Round [130] log likelihood: -12925.383700
EM: Round [131] log likelihood: -12925.380634
EM: Round [132] log likelihood: -12925.377579
EM: Round [133] log likelihood: -12925.374536
EM: Round [134] log likelihood: -12925.371504
EM: Round [135] log likelihood: -12925.368482
EM: Round [136] log likelihood: -12925.365472
EM: Round [137] log likelihood: -12925.362473
EM: Round [138] log likelihood: -12925.359485
EM: Round [139] log likelihood: -12925.356507
EM: Round [140] log likelihood: -12925.353540
EM: Round [141] log likelihood: -12925.350584
EM: Round [142] log likelihood: -12925.347638
EM: Round [143] log likelihood: -12925.344703
EM: Round [144] log likelihood: -12925.341779
EM: Round [145] log likelihood: -12925.338865
EM: Round [146] log likelihood: -12925.335961
EM: Round [147] log likelihood: -12925.333067
EM: Round [148] log likelihood: -12925.330184
EM: Round [149] log likelihood: -12925.327310
EM: Round [150] log likelihood: -12925.324447
EM: Round [151] log likelihood: -12925.321594
EM: Round [152] log likelihood: -12925.318751
EM: Round [153] log likelihood: -12925.315917
EM: Round [154] log likelihood: -12925.313094
EM: Round [155] log likelihood: -12925.310280
EM: Round [156] log likelihood: -12925.307476
EM: Round [157] log likelihood: -12925.304681
EM: Round [158] log likelihood: -12925.301896
EM: Round [159] log likelihood: -12925.299121
EM: Round [160] log likelihood: -12925.296355
EM: Round [161] log likelihood: -12925.293598
EM: Round [162] log likelihood: -12925.290851
EM: Round [163] log likelihood: -12925.288113
EM: Round [164] log likelihood: -12925.285384
EM: Round [165] log likelihood: -12925.282664
EM: Round [166] log likelihood: -12925.279954
EM: Round [167] log likelihood: -12925.277252
EM: Round [168] log likelihood: -12925.274560
EM: Round [169] log likelihood: -12925.271876
EM: Round [170] log likelihood: -12925.269201
EM: Round [171] log likelihood: -12925.266536
EM: Round [172] log likelihood: -12925.263879
EM: Round [173] log likelihood: -12925.261230
EM: Round [174] log likelihood: -12925.258591
EM: Round [175] log likelihood: -12925.255960
EM: Round [176] log likelihood: -12925.253337
EM: Round [177] log likelihood: -12925.250724
EM: Round [178] log likelihood: -12925.248118
EM: Round [179] log likelihood: -12925.245521
EM: Round [180] log likelihood: -12925.242933
EM: Round [181] log likelihood: -12925.240352
EM: Round [182] log likelihood: -12925.237780
EM: Round [183] log likelihood: -12925.235217
EM: Round [184] log likelihood: -12925.232661
EM: Round [185] log likelihood: -12925.230114
EM: Round [186] log likelihood: -12925.227574
EM: Round [187] log likelihood: -12925.225043
EM: Round [188] log likelihood: -12925.222520
EM: Round [189] log likelihood: -12925.220005
EM: Round [190] log likelihood: -12925.217497
EM: Round [191] log likelihood: -12925.214998
EM: Round [192] log likelihood: -12925.212506
EM: Round [193] log likelihood: -12925.210022
EM: Round [194] log likelihood: -12925.207546
EM: Round [195] log likelihood: -12925.205077
EM: Round [196] log likelihood: -12925.202617
EM: Round [197] log likelihood: -12925.200163
EM: Round [198] log likelihood: -12925.197718
EM: Round [199] log likelihood: -12925.195280
EM: Round [200] log likelihood: -12925.192849
EM: Round [201] log likelihood: -12925.190426
EM: Round [202] log likelihood: -12925.188010
EM: Round [203] log likelihood: -12925.185602
EM: Round [204] log likelihood: -12925.183200
EM: Round [205] log likelihood: -12925.180807
EM: Round [206] log likelihood: -12925.178420
EM: Round [207] log likelihood: -12925.176041
EM: Round [208] log likelihood: -12925.173668
EM: Round [209] log likelihood: -12925.171303
EM: Round [210] log likelihood: -12925.168945
EM: Round [211] log likelihood: -12925.166594
EM: Round [212] log likelihood: -12925.164250
EM: Round [213] log likelihood: -12925.161913
EM: Round [214] log likelihood: -12925.159583
EM: Round [215] log likelihood: -12925.157260
EM: Round [216] log likelihood: -12925.154944
EM: Round [217] log likelihood: -12925.152635
EM: Round [218] log likelihood: -12925.150332
EM: Round [219] log likelihood: -12925.148036
EM: Round [220] log likelihood: -12925.145747
EM: Round [221] log likelihood: -12925.143464
EM: Round [222] log likelihood: -12925.141188
EM: Round [223] log likelihood: -12925.138919
EM: Round [224] log likelihood: -12925.136657
EM: Round [225] log likelihood: -12925.134401
EM: Round [226] log likelihood: -12925.132151
EM: Round [227] log likelihood: -12925.129908
EM: Round [228] log likelihood: -12925.127671
EM: Round [229] log likelihood: -12925.125441
EM: Round [230] log likelihood: -12925.123217
EM: Round [231] log likelihood: -12925.121000
EM: Round [232] log likelihood: -12925.118789
EM: Round [233] log likelihood: -12925.116584
EM: Round [234] log likelihood: -12925.114385
EM: Round [235] log likelihood: -12925.112193
EM: Round [236] log likelihood: -12925.110006
EM: Round [237] log likelihood: -12925.107826
EM: Round [238] log likelihood: -12925.105653
EM: Round [239] log likelihood: -12925.103485
EM: Round [240] log likelihood: -12925.101323
EM: Round [241] log likelihood: -12925.099167
EM: Round [242] log likelihood: -12925.097018
EM: Round [243] log likelihood: -12925.094874
EM: Round [244] log likelihood: -12925.092736
EM: Round [245] log likelihood: -12925.090604
EM: Round [246] log likelihood: -12925.088478
EM: Round [247] log likelihood: -12925.086358
EM: Round [248] log likelihood: -12925.084244
EM: Round [249] log likelihood: -12925.082136
EM: Round [250] log likelihood: -12925.080033
EM: Round [251] log likelihood: -12925.077936
EM: Round [252] log likelihood: -12925.075845
EM: Round [253] log likelihood: -12925.073760
EM: Round [254] log likelihood: -12925.071680
EM: Round [255] log likelihood: -12925.069606
EM: Round [256] log likelihood: -12925.067537
EM: Round [257] log likelihood: -12925.065474
EM: Round [258] log likelihood: -12925.063417
EM: Round [259] log likelihood: -12925.061365
EM: Round [260] log likelihood: -12925.059318
EM: Round [261] log likelihood: -12925.057278
EM: Round [262] log likelihood: -12925.055242
EM: Round [263] log likelihood: -12925.053212
EM: Round [264] log likelihood: -12925.051188
EM: Round [265] log likelihood: -12925.049168
EM: Round [266] log likelihood: -12925.047155
EM: Round [267] log likelihood: -12925.045146
EM: Round [268] log likelihood: -12925.043143
EM: Round [269] log likelihood: -12925.041145
EM: Round [270] log likelihood: -12925.039152
EM: Round [271] log likelihood: -12925.037165
EM: Round [272] log likelihood: -12925.035183
EM: Round [273] log likelihood: -12925.033206
EM: Round [274] log likelihood: -12925.031234
EM: Round [275] log likelihood: -12925.029267
EM: Round [276] log likelihood: -12925.027305
EM: Round [277] log likelihood: -12925.025349
EM: Round [278] log likelihood: -12925.023398
EM: Round [279] log likelihood: -12925.021451
EM: Round [280] log likelihood: -12925.019510
EM: Round [281] log likelihood: -12925.017573
EM: Round [282] log likelihood: -12925.015642
EM: Round [283] log likelihood: -12925.013715
EM: Round [284] log likelihood: -12925.011794
EM: Round [285] log likelihood: -12925.009877
EM: Round [286] log likelihood: -12925.007966
EM: Round [287] log likelihood: -12925.006059
EM: Round [288] log likelihood: -12925.004157
EM: Round [289] log likelihood: -12925.002260
EM: Round [290] log likelihood: -12925.000367
EM: Round [291] log likelihood: -12924.998480
EM: Round [292] log likelihood: -12924.996597
EM: Round [293] log likelihood: -12924.994719
EM: Round [294] log likelihood: -12924.992845
EM: Round [295] log likelihood: -12924.990976
EM: Round [296] log likelihood: -12924.989112
EM: Round [297] log likelihood: -12924.987253
EM: Round [298] log likelihood: -12924.985398
EM: Round [299] log likelihood: -12924.983548
EM: Round [300] log likelihood: -12924.981703
EM: Round [301] log likelihood: -12924.979862
EM: Round [302] log likelihood: -12924.978025
EM: Round [303] log likelihood: -12924.976194
EM: Round [304] log likelihood: -12924.974366
EM: Round [305] log likelihood: -12924.972543
EM: Round [306] log likelihood: -12924.970725
EM: Round [307] log likelihood: -12924.968911
EM: Round [308] log likelihood: -12924.967102
EM: Round [309] log likelihood: -12924.965297
EM: Round [310] log likelihood: -12924.963496
EM: Round [311] log likelihood: -12924.961700
EM: Round [312] log likelihood: -12924.959908
EM: Round [313] log likelihood: -12924.958120
EM: Round [314] log likelihood: -12924.956337
EM: Round [315] log likelihood: -12924.954558
EM: Round [316] log likelihood: -12924.952784
EM: Round [317] log likelihood: -12924.951014
EM: Round [318] log likelihood: -12924.949247
EM: Round [319] log likelihood: -12924.947486
EM: Round [320] log likelihood: -12924.945728
EM: Round [321] log likelihood: -12924.943975
EM: Round [322] log likelihood: -12924.942225
EM: Round [323] log likelihood: -12924.940480
EM: Round [324] log likelihood: -12924.938740
EM: Round [325] log likelihood: -12924.937003
EM: Round [326] log likelihood: -12924.935270
EM: Round [327] log likelihood: -12924.933542
EM: Round [328] log likelihood: -12924.931817
EM: Round [329] log likelihood: -12924.930097
EM: Round [330] log likelihood: -12924.928381
EM: Round [331] log likelihood: -12924.926668
EM: Round [332] log likelihood: -12924.924960
EM: Round [333] log likelihood: -12924.923256
EM: Round [334] log likelihood: -12924.921555
EM: Round [335] log likelihood: -12924.919859
EM: Round [336] log likelihood: -12924.918167
EM: Round [337] log likelihood: -12924.916478
EM: Round [338] log likelihood: -12924.914794
EM: Round [339] log likelihood: -12924.913113
EM: Round [340] log likelihood: -12924.911437
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EM: Round [799] log likelihood: -12924.400921
EM: Round [800] log likelihood: -12924.400172
EM: Round [801] log likelihood: -12924.399424
EM: Round [802] log likelihood: -12924.398678
EM: Round [803] log likelihood: -12924.397932
EM: Round [804] log likelihood: -12924.397187
EM: Round [805] log likelihood: -12924.396443
EM: Round [806] log likelihood: -12924.395701
EM: Round [807] log likelihood: -12924.394959
EM: Round [808] log likelihood: -12924.394218
EM: Round [809] log likelihood: -12924.393479
EM: Round [810] log likelihood: -12924.392740
EM: Round [811] log likelihood: -12924.392002
EM: Round [812] log likelihood: -12924.391266
EM: Round [813] log likelihood: -12924.390530
EM: Round [814] log likelihood: -12924.389796
EM: Round [815] log likelihood: -12924.389062
EM: Round [816] log likelihood: -12924.388329
EM: Round [817] log likelihood: -12924.387598
EM: Round [818] log likelihood: -12924.386867
EM: Round [819] log likelihood: -12924.386138
EM: Round [820] log likelihood: -12924.385409
EM: Round [821] log likelihood: -12924.384682
EM: Round [822] log likelihood: -12924.383955
EM: Round [823] log likelihood: -12924.383230
EM: Round [824] log likelihood: -12924.382505
EM: Round [825] log likelihood: -12924.381781
EM: Round [826] log likelihood: -12924.381059
EM: Round [827] log likelihood: -12924.380337
EM: Round [828] log likelihood: -12924.379616
EM: Round [829] log likelihood: -12924.378897
EM: Round [830] log likelihood: -12924.378178
EM: Round [831] log likelihood: -12924.377460
EM: Round [832] log likelihood: -12924.376744
EM: Round [833] log likelihood: -12924.376028
EM: Round [834] log likelihood: -12924.375313
EM: Round [835] log likelihood: -12924.374599
EM: Round [836] log likelihood: -12924.373886
EM: Round [837] log likelihood: -12924.373174
EM: Round [838] log likelihood: -12924.372463
EM: Round [839] log likelihood: -12924.371753
EM: Round [840] log likelihood: -12924.371044
EM: Round [841] log likelihood: -12924.370336
EM: Round [842] log likelihood: -12924.369629
EM: Round [843] log likelihood: -12924.368923
EM: Round [844] log likelihood: -12924.368218
EM: Round [845] log likelihood: -12924.367514
EM: Round [846] log likelihood: -12924.366810
EM: Round [847] log likelihood: -12924.366108
EM: Round [848] log likelihood: -12924.365406
EM: Round [849] log likelihood: -12924.364706
EM: Round [850] log likelihood: -12924.364006
EM: Round [851] log likelihood: -12924.363308
EM: Round [852] log likelihood: -12924.362610
EM: Round [853] log likelihood: -12924.361913
EM: Round [854] log likelihood: -12924.361217
EM: Round [855] log likelihood: -12924.360522
EM: Round [856] log likelihood: -12924.359829
EM: Round [857] log likelihood: -12924.359135
EM: Round [858] log likelihood: -12924.358443
EM: Round [859] log likelihood: -12924.357752
EM: Round [860] log likelihood: -12924.357062
EM: Round [861] log likelihood: -12924.356372
EM: Round [862] log likelihood: -12924.355684
EM: Round [863] log likelihood: -12924.354996
EM: Round [864] log likelihood: -12924.354310
EM: Round [865] log likelihood: -12924.353624
EM: Round [866] log likelihood: -12924.352939
EM: Round [867] log likelihood: -12924.352255
EM: Round [868] log likelihood: -12924.351572
EM: Round [869] log likelihood: -12924.350890
EM: Round [870] log likelihood: -12924.350209
EM: Round [871] log likelihood: -12924.349529
EM: Round [872] log likelihood: -12924.348849
EM: Round [873] log likelihood: -12924.348171
EM: Round [874] log likelihood: -12924.347493
EM: Round [875] log likelihood: -12924.346816
EM: Round [876] log likelihood: -12924.346141
EM: Round [877] log likelihood: -12924.345466
EM: Round [878] log likelihood: -12924.344792
EM: Round [879] log likelihood: -12924.344118
EM: Round [880] log likelihood: -12924.343446
EM: Round [881] log likelihood: -12924.342775
EM: Round [882] log likelihood: -12924.342104
EM: Round [883] log likelihood: -12924.341434
EM: Round [884] log likelihood: -12924.340766
EM: Round [885] log likelihood: -12924.340098
EM: Round [886] log likelihood: -12924.339431
EM: Round [887] log likelihood: -12924.338765
EM: Round [888] log likelihood: -12924.338099
EM: Round [889] log likelihood: -12924.337435
EM: Round [890] log likelihood: -12924.336771
EM: Round [891] log likelihood: -12924.336109
EM: Round [892] log likelihood: -12924.335447
EM: Round [893] log likelihood: -12924.334786
EM: Round [894] log likelihood: -12924.334126
EM: Round [895] log likelihood: -12924.333466
EM: Round [896] log likelihood: -12924.332808
EM: Round [897] log likelihood: -12924.332150
EM: Round [898] log likelihood: -12924.331494
EM: Round [899] log likelihood: -12924.330838
EM: Round [900] log likelihood: -12924.330183
EM: Round [901] log likelihood: -12924.329529
EM: Round [902] log likelihood: -12924.328875
EM: Round [903] log likelihood: -12924.328223
EM: Round [904] log likelihood: -12924.327571
EM: Round [905] log likelihood: -12924.326921
EM: Round [906] log likelihood: -12924.326271
EM: Round [907] log likelihood: -12924.325622
EM: Round [908] log likelihood: -12924.324973
EM: Round [909] log likelihood: -12924.324326
EM: Round [910] log likelihood: -12924.323679
EM: Round [911] log likelihood: -12924.323033
EM: Round [912] log likelihood: -12924.322389
EM: Round [913] log likelihood: -12924.321744
EM: Round [914] log likelihood: -12924.321101
EM: Round [915] log likelihood: -12924.320459
EM: Round [916] log likelihood: -12924.319817
EM: Round [917] log likelihood: -12924.319176
EM: Round [918] log likelihood: -12924.318536
EM: Round [919] log likelihood: -12924.317897
EM: Round [920] log likelihood: -12924.317259
EM: Round [921] log likelihood: -12924.316621
EM: Round [922] log likelihood: -12924.315984
EM: Round [923] log likelihood: -12924.315348
EM: Round [924] log likelihood: -12924.314713
EM: Round [925] log likelihood: -12924.314079
EM: Round [926] log likelihood: -12924.313445
EM: Round [927] log likelihood: -12924.312813
EM: Round [928] log likelihood: -12924.312181
EM: Round [929] log likelihood: -12924.311550
EM: Round [930] log likelihood: -12924.310920
EM: Round [931] log likelihood: -12924.310290
EM: Round [932] log likelihood: -12924.309661
EM: Round [933] log likelihood: -12924.309033
EM: Round [934] log likelihood: -12924.308406
EM: Round [935] log likelihood: -12924.307780
EM: Round [936] log likelihood: -12924.307155
EM: Round [937] log likelihood: -12924.306530
EM: Round [938] log likelihood: -12924.305906
EM: Round [939] log likelihood: -12924.305283
EM: Round [940] log likelihood: -12924.304660
EM: Round [941] log likelihood: -12924.304039
EM: Round [942] log likelihood: -12924.303418
EM: Round [943] log likelihood: -12924.302798
EM: Round [944] log likelihood: -12924.302179
EM: Round [945] log likelihood: -12924.301560
EM: Round [946] log likelihood: -12924.300943
EM: Round [947] log likelihood: -12924.300326
EM: Round [948] log likelihood: -12924.299710
EM: Round [949] log likelihood: -12924.299094
EM: Round [950] log likelihood: -12924.298480
EM: Round [951] log likelihood: -12924.297866
EM: Round [952] log likelihood: -12924.297253
EM: Round [953] log likelihood: -12924.296641
EM: Round [954] log likelihood: -12924.296029
EM: Round [955] log likelihood: -12924.295418
EM: Round [956] log likelihood: -12924.294808
EM: Round [957] log likelihood: -12924.294199
EM: Round [958] log likelihood: -12924.293591
EM: Round [959] log likelihood: -12924.292983
EM: Round [960] log likelihood: -12924.292376
EM: Round [961] log likelihood: -12924.291770
EM: Round [962] log likelihood: -12924.291165
EM: Round [963] log likelihood: -12924.290560
EM: Round [964] log likelihood: -12924.289956
EM: Round [965] log likelihood: -12924.289353
EM: Round [966] log likelihood: -12924.288750
EM: Round [967] log likelihood: -12924.288149
EM: Round [968] log likelihood: -12924.287548
EM: Round [969] log likelihood: -12924.286948
EM: Round [970] log likelihood: -12924.286348
EM: Round [971] log likelihood: -12924.285749
EM: Round [972] log likelihood: -12924.285151
EM: Round [973] log likelihood: -12924.284554
EM: Round [974] log likelihood: -12924.283958
EM: Round [975] log likelihood: -12924.283362
EM: Round [976] log likelihood: -12924.282767
EM: Round [977] log likelihood: -12924.282173
EM: Round [978] log likelihood: -12924.281579
EM: Round [979] log likelihood: -12924.280986
EM: Round [980] log likelihood: -12924.280394
EM: Round [981] log likelihood: -12924.279803
EM: Round [982] log likelihood: -12924.279212
EM: Round [983] log likelihood: -12924.278622
EM: Round [984] log likelihood: -12924.278033
EM: Round [985] log likelihood: -12924.277445
EM: Round [986] log likelihood: -12924.276857
EM: Round [987] log likelihood: -12924.276270
EM: Round [988] log likelihood: -12924.275684
EM: Round [989] log likelihood: -12924.275098
EM: Round [990] log likelihood: -12924.274513
EM: Round [991] log likelihood: -12924.273929
EM: Round [992] log likelihood: -12924.273346
EM: Round [993] log likelihood: -12924.272763
EM: Round [994] log likelihood: -12924.272181
EM: Round [995] log likelihood: -12924.271600
EM: Round [996] log likelihood: -12924.271019
EM: Round [997] log likelihood: -12924.270439
EM: Round [998] log likelihood: -12924.269860
EM: Round [999] log likelihood: -12924.269282
EM: Round [1000] log likelihood: -12924.268704
EM: Round [1001] log likelihood: -12924.268127
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
-extracting read coordinates from /tmp/nxf.tlK9bTyVIh/tih_rna_sample_00087_23H5VFLT4_s17.consolidated.bam into /tmp/nxf.tlK9bTyVIh/tih_rna_sample_00087_23H5VFLT4_s17.consolidated.bam.read_coords

CMD: touch /tmp/nxf.tlK9bTyVIh/tih_rna_sample_00087_23H5VFLT4_s17.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.tlK9bTyVIh/tih_rna_sample_00087_23H5VFLT4_s17.consolidated.bam.read_coords > /tmp/nxf.tlK9bTyVIh/tih_rna_sample_00087_23H5VFLT4_s17.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.tlK9bTyVIh/tih_rna_sample_00087_23H5VFLT4_s17.consolidated.bam.frag_coords > /tmp/nxf.tlK9bTyVIh/tih_rna_sample_00087_23H5VFLT4_s17.consolidated.bam.frag_coords.coord_sorted
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.tlK9bTyVIh/fi_workdir/tih_rna_sample_00087_23H5VFLT4_s17.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.tlK9bTyVIh/fi_workdir/tih_rna_sample_00087_23H5VFLT4_s17.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter  --genome_lib_dir ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 50 
CMD: cp /tmp/nxf.tlK9bTyVIh/fi_workdir/tih_rna_sample_00087_23H5VFLT4_s17.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.tlK9bTyVIh/tih_rna_sample_00087_23H5VFLT4_s17.post_blast_and_promiscuity_filter
-done, see /tmp/nxf.tlK9bTyVIh/tih_rna_sample_00087_23H5VFLT4_s17.post_blast_and_promiscuity_filter.annot_filter.pass
EM: Starting log likelihood: -10828.190079
EM: Round [1] log likelihood: -10826.997934
EM: Round [2] log likelihood: -10826.983271
EM: Round [3] log likelihood: -10826.978116
EM: Round [4] log likelihood: -10826.973654
EM: Round [5] log likelihood: -10826.969290
EM: Round [6] log likelihood: -10826.964956
EM: Round [7] log likelihood: -10826.960644
EM: Round [8] log likelihood: -10826.956354
EM: Round [9] log likelihood: -10826.952085
EM: Round [10] log likelihood: -10826.947837
EM: Round [11] log likelihood: -10826.943610
EM: Round [12] log likelihood: -10826.939403
EM: Round [13] log likelihood: -10826.935216
EM: Round [14] log likelihood: -10826.931049
EM: Round [15] log likelihood: -10826.926903
EM: Round [16] log likelihood: -10826.922776
EM: Round [17] log likelihood: -10826.918668
EM: Round [18] log likelihood: -10826.914581
EM: Round [19] log likelihood: -10826.910512
EM: Round [20] log likelihood: -10826.906462
EM: Round [21] log likelihood: -10826.902432
EM: Round [22] log likelihood: -10826.898420
EM: Round [23] log likelihood: -10826.894426
EM: Round [24] log likelihood: -10826.890451
EM: Round [25] log likelihood: -10826.886495
EM: Round [26] log likelihood: -10826.882556
EM: Round [27] log likelihood: -10826.878636
EM: Round [28] log likelihood: -10826.874733
EM: Round [29] log likelihood: -10826.870848
EM: Round [30] log likelihood: -10826.866980
EM: Round [31] log likelihood: -10826.863130
EM: Round [32] log likelihood: -10826.859297
EM: Round [33] log likelihood: -10826.855481
EM: Round [34] log likelihood: -10826.851682
EM: Round [35] log likelihood: -10826.847899
EM: Round [36] log likelihood: -10826.844134
EM: Round [37] log likelihood: -10826.840385
EM: Round [38] log likelihood: -10826.836652
EM: Round [39] log likelihood: -10826.832936
EM: Round [40] log likelihood: -10826.829235
EM: Round [41] log likelihood: -10826.825551
EM: Round [42] log likelihood: -10826.821883
EM: Round [43] log likelihood: -10826.818230
EM: Round [44] log likelihood: -10826.814593
EM: Round [45] log likelihood: -10826.810971
EM: Round [46] log likelihood: -10826.807365
EM: Round [47] log likelihood: -10826.803774
EM: Round [48] log likelihood: -10826.800198
EM: Round [49] log likelihood: -10826.796637
EM: Round [50] log likelihood: -10826.793091
EM: Round [51] log likelihood: -10826.789560
EM: Round [52] log likelihood: -10826.786044
EM: Round [53] log likelihood: -10826.782542
EM: Round [54] log likelihood: -10826.779054
EM: Round [55] log likelihood: -10826.775581
EM: Round [56] log likelihood: -10826.772122
EM: Round [57] log likelihood: -10826.768678
EM: Round [58] log likelihood: -10826.765247
EM: Round [59] log likelihood: -10826.761830
EM: Round [60] log likelihood: -10826.758427
EM: Round [61] log likelihood: -10826.755038
EM: Round [62] log likelihood: -10826.751662
EM: Round [63] log likelihood: -10826.748300
EM: Round [64] log likelihood: -10826.744951
EM: Round [65] log likelihood: -10826.741615
EM: Round [66] log likelihood: -10826.738293
EM: Round [67] log likelihood: -10826.734984
EM: Round [68] log likelihood: -10826.731688
EM: Round [69] log likelihood: -10826.728404
EM: Round [70] log likelihood: -10826.725134
EM: Round [71] log likelihood: -10826.721876
EM: Round [72] log likelihood: -10826.718631
EM: Round [73] log likelihood: -10826.715399
EM: Round [74] log likelihood: -10826.712179
EM: Round [75] log likelihood: -10826.708971
EM: Round [76] log likelihood: -10826.705776
EM: Round [77] log likelihood: -10826.702593
EM: Round [78] log likelihood: -10826.699422
EM: Round [79] log likelihood: -10826.696263
EM: Round [80] log likelihood: -10826.693116
EM: Round [81] log likelihood: -10826.689981
EM: Round [82] log likelihood: -10826.686858
EM: Round [83] log likelihood: -10826.683746
EM: Round [84] log likelihood: -10826.680646
EM: Round [85] log likelihood: -10826.677558
EM: Round [86] log likelihood: -10826.674481
EM: Round [87] log likelihood: -10826.671415
EM: Round [88] log likelihood: -10826.668361
EM: Round [89] log likelihood: -10826.665318
EM: Round [90] log likelihood: -10826.662286
EM: Round [91] log likelihood: -10826.659266
EM: Round [92] log likelihood: -10826.656256
EM: Round [93] log likelihood: -10826.653257
EM: Round [94] log likelihood: -10826.650269
EM: Round [95] log likelihood: -10826.647292
EM: Round [96] log likelihood: -10826.644326
EM: Round [97] log likelihood: -10826.641370
EM: Round [98] log likelihood: -10826.638425
EM: Round [99] log likelihood: -10826.635491
EM: Round [100] log likelihood: -10826.632566
EM: Round [101] log likelihood: -10826.629653
EM: Round [102] log likelihood: -10826.626749
EM: Round [103] log likelihood: -10826.623856
EM: Round [104] log likelihood: -10826.620973
EM: Round [105] log likelihood: -10826.618100
EM: Round [106] log likelihood: -10826.615238
EM: Round [107] log likelihood: -10826.612385
EM: Round [108] log likelihood: -10826.609542
EM: Round [109] log likelihood: -10826.606709
EM: Round [110] log likelihood: -10826.603886
EM: Round [111] log likelihood: -10826.601072
EM: Round [112] log likelihood: -10826.598269
EM: Round [113] log likelihood: -10826.595475
EM: Round [114] log likelihood: -10826.592690
EM: Round [115] log likelihood: -10826.589915
EM: Round [116] log likelihood: -10826.587149
EM: Round [117] log likelihood: -10826.584393
EM: Round [118] log likelihood: -10826.581646
EM: Round [119] log likelihood: -10826.578909
EM: Round [120] log likelihood: -10826.576180
EM: Round [121] log likelihood: -10826.573461
EM: Round [122] log likelihood: -10826.570751
EM: Round [123] log likelihood: -10826.568050
EM: Round [124] log likelihood: -10826.565358
EM: Round [125] log likelihood: -10826.562675
EM: Round [126] log likelihood: -10826.560001
EM: Round [127] log likelihood: -10826.557335
EM: Round [128] log likelihood: -10826.554678
EM: Round [129] log likelihood: -10826.552031
EM: Round [130] log likelihood: -10826.549391
EM: Round [131] log likelihood: -10826.546761
EM: Round [132] log likelihood: -10826.544139
EM: Round [133] log likelihood: -10826.541525
EM: Round [134] log likelihood: -10826.538920
EM: Round [135] log likelihood: -10826.536324
EM: Round [136] log likelihood: -10826.533736
EM: Round [137] log likelihood: -10826.531156
EM: Round [138] log likelihood: -10826.528584
EM: Round [139] log likelihood: -10826.526021
EM: Round [140] log likelihood: -10826.523466
EM: Round [141] log likelihood: -10826.520919
EM: Round [142] log likelihood: -10826.518380
EM: Round [143] log likelihood: -10826.515849
EM: Round [144] log likelihood: -10826.513326
EM: Round [145] log likelihood: -10826.510811
EM: Round [146] log likelihood: -10826.508304
EM: Round [147] log likelihood: -10826.505805
EM: Round [148] log likelihood: -10826.503313
EM: Round [149] log likelihood: -10826.500830
EM: Round [150] log likelihood: -10826.498354
EM: Round [151] log likelihood: -10826.495886
EM: Round [152] log likelihood: -10826.493425
EM: Round [153] log likelihood: -10826.490973
EM: Round [154] log likelihood: -10826.488527
EM: Round [155] log likelihood: -10826.486089
EM: Round [156] log likelihood: -10826.483659
EM: Round [157] log likelihood: -10826.481236
EM: Round [158] log likelihood: -10826.478821
EM: Round [159] log likelihood: -10826.476413
EM: Round [160] log likelihood: -10826.474012
EM: Round [161] log likelihood: -10826.471618
EM: Round [162] log likelihood: -10826.469232
EM: Round [163] log likelihood: -10826.466853
EM: Round [164] log likelihood: -10826.464481
EM: Round [165] log likelihood: -10826.462116
EM: Round [166] log likelihood: -10826.459759
EM: Round [167] log likelihood: -10826.457408
EM: Round [168] log likelihood: -10826.455064
EM: Round [169] log likelihood: -10826.452728
EM: Round [170] log likelihood: -10826.450398
EM: Round [171] log likelihood: -10826.448075
EM: Round [172] log likelihood: -10826.445759
EM: Round [173] log likelihood: -10826.443450
EM: Round [174] log likelihood: -10826.441148
EM: Round [175] log likelihood: -10826.438852
EM: Round [176] log likelihood: -10826.436563
EM: Round [177] log likelihood: -10826.434281
EM: Round [178] log likelihood: -10826.432006
EM: Round [179] log likelihood: -10826.429737
EM: Round [180] log likelihood: -10826.427474
EM: Round [181] log likelihood: -10826.425219
EM: Round [182] log likelihood: -10826.422969
EM: Round [183] log likelihood: -10826.420727
EM: Round [184] log likelihood: -10826.418490
EM: Round [185] log likelihood: -10826.416260
EM: Round [186] log likelihood: -10826.414037
EM: Round [187] log likelihood: -10826.411820
EM: Round [188] log likelihood: -10826.409609
EM: Round [189] log likelihood: -10826.407404
EM: Round [190] log likelihood: -10826.405206
EM: Round [191] log likelihood: -10826.403014
EM: Round [192] log likelihood: -10826.400828
EM: Round [193] log likelihood: -10826.398648
EM: Round [194] log likelihood: -10826.396474
EM: Round [195] log likelihood: -10826.394307
EM: Round [196] log likelihood: -10826.392145
EM: Round [197] log likelihood: -10826.389990
EM: Round [198] log likelihood: -10826.387841
EM: Round [199] log likelihood: -10826.385697
EM: Round [200] log likelihood: -10826.383560
EM: Round [201] log likelihood: -10826.381428
EM: Round [202] log likelihood: -10826.379302
EM: Round [203] log likelihood: -10826.377183
EM: Round [204] log likelihood: -10826.375069
EM: Round [205] log likelihood: -10826.372961
EM: Round [206] log likelihood: -10826.370858
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EM: Round [667] log likelihood: -10825.762055
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EM: Round [669] log likelihood: -10825.760357
EM: Round [670] log likelihood: -10825.759510
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EM: Round [674] log likelihood: -10825.756133
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EM: Round [679] log likelihood: -10825.751940
EM: Round [680] log likelihood: -10825.751105
EM: Round [681] log likelihood: -10825.750271
EM: Round [682] log likelihood: -10825.749439
EM: Round [683] log likelihood: -10825.748608
EM: Round [684] log likelihood: -10825.747778
EM: Round [685] log likelihood: -10825.746949
EM: Round [686] log likelihood: -10825.746122
EM: Round [687] log likelihood: -10825.745295
EM: Round [688] log likelihood: -10825.744470
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EM: Round [690] log likelihood: -10825.742824
EM: Round [691] log likelihood: -10825.742002
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EM: Round [695] log likelihood: -10825.738728
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EM: Round [699] log likelihood: -10825.735473
EM: Round [700] log likelihood: -10825.734662
EM: Round [701] log likelihood: -10825.733853
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EM: Round [703] log likelihood: -10825.732237
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EM: Round [705] log likelihood: -10825.730626
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EM: Round [712] log likelihood: -10825.725023
EM: Round [713] log likelihood: -10825.724228
EM: Round [714] log likelihood: -10825.723433
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EM: Round [716] log likelihood: -10825.721847
EM: Round [717] log likelihood: -10825.721056
EM: Round [718] log likelihood: -10825.720266
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EM: Round [726] log likelihood: -10825.713986
EM: Round [727] log likelihood: -10825.713206
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EM: Round [729] log likelihood: -10825.711649
EM: Round [730] log likelihood: -10825.710873
EM: Round [731] log likelihood: -10825.710097
EM: Round [732] log likelihood: -10825.709323
EM: Round [733] log likelihood: -10825.708549
EM: Round [734] log likelihood: -10825.707777
EM: Round [735] log likelihood: -10825.707006
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EM: Round [738] log likelihood: -10825.704699
EM: Round [739] log likelihood: -10825.703932
EM: Round [740] log likelihood: -10825.703166
EM: Round [741] log likelihood: -10825.702401
EM: Round [742] log likelihood: -10825.701637
EM: Round [743] log likelihood: -10825.700875
EM: Round [744] log likelihood: -10825.700113
EM: Round [745] log likelihood: -10825.699353
EM: Round [746] log likelihood: -10825.698594
EM: Round [747] log likelihood: -10825.697835
EM: Round [748] log likelihood: -10825.697078
EM: Round [749] log likelihood: -10825.696322
EM: Round [750] log likelihood: -10825.695567
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EM: Round [753] log likelihood: -10825.693307
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EM: Round [757] log likelihood: -10825.690310
EM: Round [758] log likelihood: -10825.689563
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EM: Round [761] log likelihood: -10825.687329
EM: Round [762] log likelihood: -10825.686586
EM: Round [763] log likelihood: -10825.685844
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EM: Round [766] log likelihood: -10825.683626
EM: Round [767] log likelihood: -10825.682888
EM: Round [768] log likelihood: -10825.682152
EM: Round [769] log likelihood: -10825.681416
EM: Round [770] log likelihood: -10825.680681
EM: Round [771] log likelihood: -10825.679948
EM: Round [772] log likelihood: -10825.679215
EM: Round [773] log likelihood: -10825.678484
EM: Round [774] log likelihood: -10825.677753
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EM: Round [776] log likelihood: -10825.676295
EM: Round [777] log likelihood: -10825.675568
EM: Round [778] log likelihood: -10825.674841
EM: Round [779] log likelihood: -10825.674116
EM: Round [780] log likelihood: -10825.673391
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EM: Round [782] log likelihood: -10825.671945
EM: Round [783] log likelihood: -10825.671223
EM: Round [784] log likelihood: -10825.670503
EM: Round [785] log likelihood: -10825.669783
EM: Round [786] log likelihood: -10825.669065
EM: Round [787] log likelihood: -10825.668347
EM: Round [788] log likelihood: -10825.667630
EM: Round [789] log likelihood: -10825.666914
EM: Round [790] log likelihood: -10825.666200
EM: Round [791] log likelihood: -10825.665486
EM: Round [792] log likelihood: -10825.664773
EM: Round [793] log likelihood: -10825.664061
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EM: Round [795] log likelihood: -10825.662640
EM: Round [796] log likelihood: -10825.661931
EM: Round [797] log likelihood: -10825.661223
EM: Round [798] log likelihood: -10825.660516
EM: Round [799] log likelihood: -10825.659810
EM: Round [800] log likelihood: -10825.659105
EM: Round [801] log likelihood: -10825.658401
EM: Round [802] log likelihood: -10825.657697
EM: Round [803] log likelihood: -10825.656995
EM: Round [804] log likelihood: -10825.656294
EM: Round [805] log likelihood: -10825.655593
EM: Round [806] log likelihood: -10825.654894
EM: Round [807] log likelihood: -10825.654195
EM: Round [808] log likelihood: -10825.653497
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EM: Round [810] log likelihood: -10825.652105
EM: Round [811] log likelihood: -10825.651410
EM: Round [812] log likelihood: -10825.650716
EM: Round [813] log likelihood: -10825.650023
EM: Round [814] log likelihood: -10825.649331
EM: Round [815] log likelihood: -10825.648640
EM: Round [816] log likelihood: -10825.647950
EM: Round [817] log likelihood: -10825.647260
EM: Round [818] log likelihood: -10825.646572
EM: Round [819] log likelihood: -10825.645884
EM: Round [820] log likelihood: -10825.645198
EM: Round [821] log likelihood: -10825.644512
EM: Round [822] log likelihood: -10825.643827
EM: Round [823] log likelihood: -10825.643143
EM: Round [824] log likelihood: -10825.642460
EM: Round [825] log likelihood: -10825.641778
EM: Round [826] log likelihood: -10825.641097
EM: Round [827] log likelihood: -10825.640417
EM: Round [828] log likelihood: -10825.639737
EM: Round [829] log likelihood: -10825.639059
EM: Round [830] log likelihood: -10825.638381
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EM: Round [835] log likelihood: -10825.635007
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EM: Round [950] log likelihood: -10825.563073
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EM: Round [967] log likelihood: -10825.553287
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EM: Round [978] log likelihood: -10825.547062
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EM: Round [980] log likelihood: -10825.545939
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EM: Round [983] log likelihood: -10825.544259
EM: Round [984] log likelihood: -10825.543700
EM: Round [985] log likelihood: -10825.543143
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EM: Round [987] log likelihood: -10825.542029
EM: Round [988] log likelihood: -10825.541473
EM: Round [989] log likelihood: -10825.540918
EM: Round [990] log likelihood: -10825.540363
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EM: Round [993] log likelihood: -10825.538704
EM: Round [994] log likelihood: -10825.538152
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EM: Round [996] log likelihood: -10825.537050
EM: Round [997] log likelihood: -10825.536500
EM: Round [998] log likelihood: -10825.535951
EM: Round [999] log likelihood: -10825.535402
EM: Round [1000] log likelihood: -10825.534854
EM: Round [1001] log likelihood: -10825.534307
-total frags in /tmp/nxf.tlK9bTyVIh/tih_rna_sample_00087_23H5VFLT4_s17_1.fastp.fastq.gz: 297460868
Warning - not locating file: /tmp/nxf.tlK9bTyVIh/tih_rna_sample_00087_23H5VFLT4_s17.gmap_trinity_GG.fusions.gff3.bed
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
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WARNING, no entry stored in dbm for [ENSG00000284627.1]
WARNING, no entry stored in dbm for [ENSG00000284627.1]
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WARNING, no entry stored in dbm for [ENSG00000255367.3]
WARNING, no entry stored in dbm for [ENSG00000254610.3]
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WARNING, no entry stored in dbm for [ENSG00000215158.9]
WARNING, no entry stored in dbm for [ENSG00000215158.9]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000253778.1]
WARNING, no entry stored in dbm for [ENSG00000253778.1]
WARNING, no entry stored in dbm for [ENSG00000253778.1]
WARNING, no entry stored in dbm for [ENSG00000253778.1]
WARNING, no entry stored in dbm for [ENSG00000253778.1]
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WARNING, no entry stored in dbm for [ENSG00000253778.1]
WARNING, no entry stored in dbm for [ENSG00000284639.1]
WARNING, no entry stored in dbm for [ENSG00000248618.1]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000068781.21]
WARNING, no entry stored in dbm for [ENSG00000254633.2]
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WARNING, no entry stored in dbm for [ENSG00000254633.2]
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WARNING, no entry stored in dbm for [ENSG00000242880.2]
WARNING, no entry stored in dbm for [ENSG00000242880.2]
WARNING, no entry stored in dbm for [ENSG00000249252.5]
WARNING, no entry stored in dbm for [ENSG00000248360.7]
WARNING, no entry stored in dbm for [ENSG00000249252.5]
WARNING, no entry stored in dbm for [ENSG00000248360.7]
WARNING, no entry stored in dbm for [ENSG00000241621.1]
WARNING, no entry stored in dbm for [ENSG00000284639.1]
WARNING, no entry stored in dbm for [ENSG00000232677.9]
ls: cannot access 'IGV_inputs': No such file or directory