.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (tih_rna_sample_00396_23H5VFLT4_s26)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/cdb56f04717b891dc3a17d49e3dad8/.command.log
Size: 829 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (tih_rna_sample_00396_23H5VFLT4_s26)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/b85037c32c25baead1b48f400c27ac/tih_rna_sample_00396_23H5VFLT4_s26.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/cdb56f04717b891dc3a17d49e3dad8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/cdb56f04717b891dc3a17d49e3dad8/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/c196f316701b38fb2767e7dd73974f/tih_rna_sample_00396_23H5VFLT4_s26.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory