.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_INFEREXPERIMENT (tih_rna_sample_00087_23H5VFLT4_s17)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/4a25f9150d603bd5ce4c063c2d1176/.command.log
Size: 950 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_INFEREXPERIMENT (tih_rna_sample_00087_23H5VFLT4_s17)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/9055d4b0da3d2fb2a1c6cf662c7616/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/4a25f9150d603bd5ce4c063c2d1176/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/4a25f9150d603bd5ce4c063c2d1176/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/3a7b49a850a43100c077525aedee73/tih_rna_sample_00087_23H5VFLT4_s17.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/a9deae1cf7801188a0adef90860515/tih_rna_sample_00087_23H5VFLT4_s17.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00087_23H5VFLT4_s17.Aligned.sortedByCoord.out.bam.bai
Reading reference gene model ref_annot.bed ... Done
Loading SAM/BAM file ...  Total 200000 usable reads were sampled