File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/5d27d926e5177ae2aec12dfd06981b/.command.log
Size
744 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (tih_rna_sample_00090_23H5VFLT4_s32)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/a9e85123044ca5535ce001b6febf6f/tih_rna_sample_00090_23H5VFLT4_s32.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/5d27d926e5177ae2aec12dfd06981b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/5d27d926e5177ae2aec12dfd06981b/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  tih_rna_sample_00090_23H5VFLT4_s32: vaf_p90=0.999559 -> CONTAMINATED (~0.0%)

Output saved to: tih_rna_sample_00090_23H5VFLT4_s32.predictions.csv
Summary: 1/1 samples flagged as contaminated