Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/865fe0fc7fd84020e07ad3ab1c3f11/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/82aea9c8c4094adc167afb6d716770/tih_rna_sample_00426_23H5VFLT4_s48.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/865fe0fc7fd84020e07ad3ab1c3f11/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory