Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/9505ceaaf03d7e36793e8ae0ca5924/fi_workdir/tih_rna_sample_00087_23H5VFLT4_s17.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/90ee603fb4403d8aeb8714e2b8e654/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/90ee603fb4403d8aeb8714e2b8e654/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 3674
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 3674
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:3674
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 1 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC026341.1--GAP43 HAVANA gene 21252 26145 . + . FI_gene_label "GAP43^ENSG00000172020.13" ; ID "AC026341.1--GAP43^GAP43^ENSG00000172020.13" ; ccdsid "CCDS33830.1" ; exon_id "ENSE00001906692.2" ; exon_number 1 ; gene_id "AC026341.1--GAP43^GAP43^ENSG00000172020.13" ; gene_name GAP43 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133758.2" ; havana_transcript "OTTHUMT00000258216.2" ; hgnc_id "HGNC:4140" ; level 2 ; orig_coord_info "chr3,115623690,115623719,+" ; protein_id "ENSP00000305010.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC026341.1--GAP43^ENST00000305124.11" ; transcript_name "GAP43-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC026341.1--GAP43 HAVANA mRNA 21252 26145 . + . FI_gene_label "GAP43^ENSG00000172020.13" ; ID "AC026341.1--GAP43^ENST00000305124.11" ; Parent "AC026341.1--GAP43^GAP43^ENSG00000172020.13" ; ccdsid "CCDS33830.1" ; exon_id "ENSE00001906692.2" ; exon_number 1 ; gene_id "AC026341.1--GAP43^GAP43^ENSG00000172020.13" ; gene_name GAP43 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133758.2" ; havana_transcript "OTTHUMT00000258216.2" ; hgnc_id "HGNC:4140" ; level 2 ; orig_coord_info "chr3,115623690,115623719,+" ; protein_id "ENSP00000305010.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC026341.1--GAP43^ENST00000305124.11" ; transcript_name "GAP43-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC079781.4--ASNS ENSEMBL gene 4220 16952 . + . FI_gene_label "ASNS^ENSG00000070669.17" ; ID "AC079781.4--ASNS^ASNS^ENSG00000070669.17" ; ccdsid "CCDS5652.1" ; exon_id "ENSE00001212450.2" ; exon_number 4 ; gene_id "AC079781.4--ASNS^ASNS^ENSG00000070669.17" ; gene_name ASNS ; gene_type protein_coding ; havana_gene "OTTHUMG00000022892.14" ; hgnc_id "HGNC:753" ; level 3 ; orig_coord_info "chr7,97868908,97869156,-" ; protein_id "ENSP00000175506.4" ; tag basic appris_principal_1 CCDS ; transcript_id "AC079781.4--ASNS^ENST00000175506.8" ; transcript_name "ASNS-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC079781.4--ASNS ENSEMBL mRNA 4220 16952 . + . FI_gene_label "ASNS^ENSG00000070669.17" ; ID "AC079781.4--ASNS^ENST00000175506.8" ; Parent "AC079781.4--ASNS^ASNS^ENSG00000070669.17" ; ccdsid "CCDS5652.1" ; exon_id "ENSE00001212450.2" ; exon_number 4 ; gene_id "AC079781.4--ASNS^ASNS^ENSG00000070669.17" ; gene_name ASNS ; gene_type protein_coding ; havana_gene "OTTHUMG00000022892.14" ; hgnc_id "HGNC:753" ; level 3 ; orig_coord_info "chr7,97868908,97869156,-" ; protein_id "ENSP00000175506.4" ; tag basic appris_principal_1 CCDS ; transcript_id "AC079781.4--ASNS^ENST00000175506.8" ; transcript_name "ASNS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC090572.2--CNBD1 HAVANA gene 9762 22866 . + . FI_gene_label "CNBD1^ENSG00000176571.12" ; ID "AC090572.2--CNBD1^CNBD1^ENSG00000176571.12" ; ccdsid "CCDS55259.1" ; exon_id "ENSE00002089763.2" ; exon_number 1 ; gene_id "AC090572.2--CNBD1^CNBD1^ENSG00000176571.12" ; gene_name CNBD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163743.6" ; havana_transcript "OTTHUMT00000375113.3" ; hgnc_id "HGNC:26663" ; level 2 ; orig_coord_info "chr8,86866496,86866583,+" ; protein_id "ENSP00000430073.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC090572.2--CNBD1^ENST00000518476.6" ; transcript_name "CNBD1-202" ; transcript_support_level 1 ; transcript_type protein_coding
AC090572.2--CNBD1 HAVANA mRNA 9762 22866 . + . FI_gene_label "CNBD1^ENSG00000176571.12" ; ID "AC090572.2--CNBD1^ENST00000518476.6" ; Parent "AC090572.2--CNBD1^CNBD1^ENSG00000176571.12" ; ccdsid "CCDS55259.1" ; exon_id "ENSE00002089763.2" ; exon_number 1 ; gene_id "AC090572.2--CNBD1^CNBD1^ENSG00000176571.12" ; gene_name CNBD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163743.6" ; havana_transcript "OTTHUMT00000375113.3" ; hgnc_id "HGNC:26663" ; level 2 ; orig_coord_info "chr8,86866496,86866583,+" ; protein_id "ENSP00000430073.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC090572.2--CNBD1^ENST00000518476.6" ; transcript_name "CNBD1-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1 HAVANA mRNA 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^ENST00000284031.13" ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC138409.2--NAIP ENSEMBL gene 21878 43057 . + . FI_gene_label "NAIP^ENSG00000249437.8" ; ID "AC138409.2--NAIP^NAIP^ENSG00000249437.8" ; ccdsid "CCDS4009.1" ; exon_id "ENSE00002284906.1" ; exon_number 2 ; gene_id "AC138409.2--NAIP^NAIP^ENSG00000249437.8" ; gene_name NAIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000163318.7" ; hgnc_id "HGNC:7634" ; level 3 ; orig_coord_info "chr5,71012348,71012915,-" ; protein_id "ENSP00000443944.1" ; tag basic appris_principal_2 CCDS ; transcript_id "AC138409.2--NAIP^ENST00000194097.8" ; transcript_name "NAIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC138409.2--NAIP ENSEMBL mRNA 21878 43057 . + . FI_gene_label "NAIP^ENSG00000249437.8" ; ID "AC138409.2--NAIP^ENST00000194097.8" ; Parent "AC138409.2--NAIP^NAIP^ENSG00000249437.8" ; ccdsid "CCDS4009.1" ; exon_id "ENSE00002284906.1" ; exon_number 2 ; gene_id "AC138409.2--NAIP^NAIP^ENSG00000249437.8" ; gene_name NAIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000163318.7" ; hgnc_id "HGNC:7634" ; level 3 ; orig_coord_info "chr5,71012348,71012915,-" ; protein_id "ENSP00000443944.1" ; tag basic appris_principal_2 CCDS ; transcript_id "AC138409.2--NAIP^ENST00000194097.8" ; transcript_name "NAIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AL512590.2--CCDC180 HAVANA gene 14599 56298 . + . FI_gene_label "CCDC180^ENSG00000197816.16" ; ID "AL512590.2--CCDC180^CCDC180^ENSG00000197816.16" ; exon_id "ENSE00003898006.1" ; exon_number 2 ; gene_id "AL512590.2--CCDC180^CCDC180^ENSG00000197816.16" ; gene_name CCDC180 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167001.3" ; havana_transcript "OTTHUMT00000383515.4" ; hgnc_id "HGNC:29303" ; level 2 ; orig_coord_info "chr9,97308064,97308132,+" ; protein_id "ENSP00000434727.2" ; tag basic MANE_Select appris_principal_1 ; transcript_id "AL512590.2--CCDC180^ENST00000529487.3" ; transcript_name "CCDC180-210" ; transcript_support_level 1 ; transcript_type protein_coding
AL512590.2--CCDC180 HAVANA mRNA 14599 56298 . + . FI_gene_label "CCDC180^ENSG00000197816.16" ; ID "AL512590.2--CCDC180^ENST00000529487.3" ; Parent "AL512590.2--CCDC180^CCDC180^ENSG00000197816.16" ; exon_id "ENSE00003898006.1" ; exon_number 2 ; gene_id "AL512590.2--CCDC180^CCDC180^ENSG00000197816.16" ; gene_name CCDC180 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167001.3" ; havana_transcript "OTTHUMT00000383515.4" ; hgnc_id "HGNC:29303" ; level 2 ; orig_coord_info "chr9,97308064,97308132,+" ; protein_id "ENSP00000434727.2" ; tag basic MANE_Select appris_principal_1 ; transcript_id "AL512590.2--CCDC180^ENST00000529487.3" ; transcript_name "CCDC180-210" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
B4GALT4--IGSF11 ENSEMBL gene 22526 38869 . + . FI_gene_label "IGSF11^ENSG00000144847.13" ; ID "B4GALT4--IGSF11^IGSF11^ENSG00000144847.13" ; ccdsid "CCDS2983.1" ; exon_id "ENSE00003713849.1" ; exon_number 1 ; gene_id "B4GALT4--IGSF11^IGSF11^ENSG00000144847.13" ; gene_name IGSF11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159387.5" ; hgnc_id "HGNC:16669" ; level 3 ; orig_coord_info "chr3,119105144,119105192,-" ; protein_id "ENSP00000346700.2" ; tag basic CCDS ; transcript_id "B4GALT4--IGSF11^ENST00000354673.6" ; transcript_name "IGSF11-201" ; transcript_support_level 1 ; transcript_type protein_coding
B4GALT4--IGSF11 ENSEMBL mRNA 22526 38869 . + . FI_gene_label "IGSF11^ENSG00000144847.13" ; ID "B4GALT4--IGSF11^ENST00000354673.6" ; Parent "B4GALT4--IGSF11^IGSF11^ENSG00000144847.13" ; ccdsid "CCDS2983.1" ; exon_id "ENSE00003713849.1" ; exon_number 1 ; gene_id "B4GALT4--IGSF11^IGSF11^ENSG00000144847.13" ; gene_name IGSF11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159387.5" ; hgnc_id "HGNC:16669" ; level 3 ; orig_coord_info "chr3,119105144,119105192,-" ; protein_id "ENSP00000346700.2" ; tag basic CCDS ; transcript_id "B4GALT4--IGSF11^ENST00000354673.6" ; transcript_name "IGSF11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
B4GALT4--IGSF11 HAVANA gene 1001 17130 . + . FI_gene_label "B4GALT4^ENSG00000121578.13" ; ID "B4GALT4--IGSF11^B4GALT4^ENSG00000121578.13" ; ccdsid "CCDS2986.1" ; exon_id "ENSE00001012114.1" ; exon_number 4 ; gene_id "B4GALT4--IGSF11^B4GALT4^ENSG00000121578.13" ; gene_name B4GALT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159358.17" ; havana_transcript "OTTHUMT00000354926.2" ; hgnc_id "HGNC:927" ; level 2 ; orig_coord_info "chr3,119229847,119230099,-" ; protein_id "ENSP00000352144.3" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "B4GALT4--IGSF11^ENST00000359213.7" ; transcript_name "B4GALT4-201" ; transcript_support_level 2 ; transcript_type protein_coding
B4GALT4--IGSF11 HAVANA mRNA 1001 17130 . + . FI_gene_label "B4GALT4^ENSG00000121578.13" ; ID "B4GALT4--IGSF11^ENST00000359213.7" ; Parent "B4GALT4--IGSF11^B4GALT4^ENSG00000121578.13" ; ccdsid "CCDS2986.1" ; exon_id "ENSE00001012114.1" ; exon_number 4 ; gene_id "B4GALT4--IGSF11^B4GALT4^ENSG00000121578.13" ; gene_name B4GALT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159358.17" ; havana_transcript "OTTHUMT00000354926.2" ; hgnc_id "HGNC:927" ; level 2 ; orig_coord_info "chr3,119229847,119230099,-" ; protein_id "ENSP00000352144.3" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "B4GALT4--IGSF11^ENST00000359213.7" ; transcript_name "B4GALT4-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CCDC169--SOHLH2 HAVANA gene 1027 13795 . + . FI_gene_label "CCDC169^ENSG00000242715.8" ; ID "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; ccdsid "CCDS45028.1" ; exon_id "ENSE00003461130.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; gene_name CCDC169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016731.4" ; havana_transcript "OTTHUMT00000368255.2" ; hgnc_id "HGNC:34361" ; level 2 ; orig_coord_info "chr13,36297637,36297719,-" ; protein_id "ENSP00000239859.7" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000239859.8" ; transcript_name "CCDC169-201" ; transcript_support_level 5 ; transcript_type protein_coding
CCDC169--SOHLH2 HAVANA mRNA 1027 13795 . + . FI_gene_label "CCDC169^ENSG00000242715.8" ; ID "CCDC169--SOHLH2^ENST00000239859.8" ; Parent "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; ccdsid "CCDS45028.1" ; exon_id "ENSE00003461130.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; gene_name CCDC169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016731.4" ; havana_transcript "OTTHUMT00000368255.2" ; hgnc_id "HGNC:34361" ; level 2 ; orig_coord_info "chr13,36297637,36297719,-" ; protein_id "ENSP00000239859.7" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000239859.8" ; transcript_name "CCDC169-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CCDC169--SOHLH2 HAVANA gene 23170 30158 . + . FI_gene_label "SOHLH2^ENSG00000120669.16" ; ID "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; ccdsid "CCDS61309.1" ; exon_id "ENSE00001482819.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; gene_name SOHLH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016728.4" ; havana_transcript "OTTHUMT00000368257.1" ; hgnc_id "HGNC:26026" ; level 1 ; orig_coord_info "chr13,36214479,36214526,-" ; protein_id "ENSP00000326838.6" ; tag basic exp_conf CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000317764.6" ; transcript_name "SOHLH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CCDC169--SOHLH2 HAVANA mRNA 23170 30158 . + . FI_gene_label "SOHLH2^ENSG00000120669.16" ; ID "CCDC169--SOHLH2^ENST00000317764.6" ; Parent "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; ccdsid "CCDS61309.1" ; exon_id "ENSE00001482819.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; gene_name SOHLH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016728.4" ; havana_transcript "OTTHUMT00000368257.1" ; hgnc_id "HGNC:26026" ; level 1 ; orig_coord_info "chr13,36214479,36214526,-" ; protein_id "ENSP00000326838.6" ; tag basic exp_conf CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000317764.6" ; transcript_name "SOHLH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COL1A1--SLC45A4 HAVANA gene 25435 34927 . + . FI_gene_label "SLC45A4^ENSG00000022567.10" ; ID "COL1A1--SLC45A4^SLC45A4^ENSG00000022567.10" ; ccdsid "CCDS34948.1" ; exon_id "ENSE00001475008.1" ; exon_number 1 ; gene_id "COL1A1--SLC45A4^SLC45A4^ENSG00000022567.10" ; gene_name SLC45A4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164393.4" ; havana_transcript "OTTHUMT00000378571.3" ; hgnc_id "HGNC:29196" ; level 2 ; orig_coord_info "chr8,141228179,141228266,-" ; protein_id "ENSP00000024061.3" ; tag basic appris_principal_1 CCDS ; transcript_id "COL1A1--SLC45A4^ENST00000024061.7" ; transcript_name "SLC45A4-201" ; transcript_support_level 1 ; transcript_type protein_coding
COL1A1--SLC45A4 HAVANA mRNA 25435 34927 . + . FI_gene_label "SLC45A4^ENSG00000022567.10" ; ID "COL1A1--SLC45A4^ENST00000024061.7" ; Parent "COL1A1--SLC45A4^SLC45A4^ENSG00000022567.10" ; ccdsid "CCDS34948.1" ; exon_id "ENSE00001475008.1" ; exon_number 1 ; gene_id "COL1A1--SLC45A4^SLC45A4^ENSG00000022567.10" ; gene_name SLC45A4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164393.4" ; havana_transcript "OTTHUMT00000378571.3" ; hgnc_id "HGNC:29196" ; level 2 ; orig_coord_info "chr8,141228179,141228266,-" ; protein_id "ENSP00000024061.3" ; tag basic appris_principal_1 CCDS ; transcript_id "COL1A1--SLC45A4^ENST00000024061.7" ; transcript_name "SLC45A4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COL1A1--SLC45A4 HAVANA gene 1002 18313 . + . FI_gene_label "COL1A1^ENSG00000108821.14" ; ID "COL1A1--SLC45A4^COL1A1^ENSG00000108821.14" ; ccdsid "CCDS11561.1" ; exon_id "ENSE00003500023.2" ; exon_number 1 ; gene_id "COL1A1--SLC45A4^COL1A1^ENSG00000108821.14" ; gene_name COL1A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000148674.9" ; havana_transcript "OTTHUMT00000309036.3" ; hgnc_id "HGNC:2197" ; level 2 ; orig_coord_info "chr17,50201411,50201513,-" ; protein_id "ENSP00000225964.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COL1A1--SLC45A4^ENST00000225964.10" ; transcript_name "COL1A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
COL1A1--SLC45A4 HAVANA mRNA 1002 18313 . + . FI_gene_label "COL1A1^ENSG00000108821.14" ; ID "COL1A1--SLC45A4^ENST00000225964.10" ; Parent "COL1A1--SLC45A4^COL1A1^ENSG00000108821.14" ; ccdsid "CCDS11561.1" ; exon_id "ENSE00003500023.2" ; exon_number 1 ; gene_id "COL1A1--SLC45A4^COL1A1^ENSG00000108821.14" ; gene_name COL1A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000148674.9" ; havana_transcript "OTTHUMT00000309036.3" ; hgnc_id "HGNC:2197" ; level 2 ; orig_coord_info "chr17,50201411,50201513,-" ; protein_id "ENSP00000225964.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COL1A1--SLC45A4^ENST00000225964.10" ; transcript_name "COL1A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GOLGA6L10--GOLGA2P6 HAVANA gene 1001 9781 . + . FI_gene_label "GOLGA6L10^ENSG00000278662.5" ; ID "GOLGA6L10--GOLGA2P6^GOLGA6L10^ENSG00000278662.5" ; ccdsid "CCDS45325.2" ; exon_id "ENSE00002255247.2" ; exon_number 1 ; gene_id "GOLGA6L10--GOLGA2P6^GOLGA6L10^ENSG00000278662.5" ; gene_name GOLGA6L10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172580.4" ; havana_transcript "OTTHUMT00000419277.4" ; hgnc_id "HGNC:37228" ; level 2 ; orig_coord_info "chr15,82349292,82349375,-" ; protein_id "ENSP00000479362.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "GOLGA6L10--GOLGA2P6^ENST00000610657.2" ; transcript_name "GOLGA6L10-207" ; transcript_support_level 2 ; transcript_type protein_coding
GOLGA6L10--GOLGA2P6 HAVANA mRNA 1001 9781 . + . FI_gene_label "GOLGA6L10^ENSG00000278662.5" ; ID "GOLGA6L10--GOLGA2P6^ENST00000610657.2" ; Parent "GOLGA6L10--GOLGA2P6^GOLGA6L10^ENSG00000278662.5" ; ccdsid "CCDS45325.2" ; exon_id "ENSE00002255247.2" ; exon_number 1 ; gene_id "GOLGA6L10--GOLGA2P6^GOLGA6L10^ENSG00000278662.5" ; gene_name GOLGA6L10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172580.4" ; havana_transcript "OTTHUMT00000419277.4" ; hgnc_id "HGNC:37228" ; level 2 ; orig_coord_info "chr15,82349292,82349375,-" ; protein_id "ENSP00000479362.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "GOLGA6L10--GOLGA2P6^ENST00000610657.2" ; transcript_name "GOLGA6L10-207" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
GTF2A1L--STON1-GTF2A1L HAVANA gene 1059 10137 . + . FI_gene_label "GTF2A1L^ENSG00000242441.8" ; ID "GTF2A1L--STON1-GTF2A1L^GTF2A1L^ENSG00000242441.8" ; ccdsid "CCDS46281.1" ; exon_id "ENSE00001939761.2" ; exon_number 1 ; gene_id "GTF2A1L--STON1-GTF2A1L^GTF2A1L^ENSG00000242441.8" ; gene_name GTF2A1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000152038.17" ; havana_transcript "OTTHUMT00000323852.5" ; hgnc_id "HGNC:30727" ; level 2 ; orig_coord_info "chr2,48617875,48617895,+" ; protein_id "ENSP00000384597.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GTF2A1L--STON1-GTF2A1L^ENST00000403751.8" ; transcript_name "GTF2A1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
GTF2A1L--STON1-GTF2A1L HAVANA mRNA 1059 10137 . + . FI_gene_label "GTF2A1L^ENSG00000242441.8" ; ID "GTF2A1L--STON1-GTF2A1L^ENST00000403751.8" ; Parent "GTF2A1L--STON1-GTF2A1L^GTF2A1L^ENSG00000242441.8" ; ccdsid "CCDS46281.1" ; exon_id "ENSE00001939761.2" ; exon_number 1 ; gene_id "GTF2A1L--STON1-GTF2A1L^GTF2A1L^ENSG00000242441.8" ; gene_name GTF2A1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000152038.17" ; havana_transcript "OTTHUMT00000323852.5" ; hgnc_id "HGNC:30727" ; level 2 ; orig_coord_info "chr2,48617875,48617895,+" ; protein_id "ENSP00000384597.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GTF2A1L--STON1-GTF2A1L^ENST00000403751.8" ; transcript_name "GTF2A1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MARVELD2--OCLN HAVANA gene 1052 11698 . + . FI_gene_label "MARVELD2^ENSG00000152939.17" ; ID "MARVELD2--OCLN^MARVELD2^ENSG00000152939.17" ; ccdsid "CCDS34175.1" ; exon_id "ENSE00001174822.3" ; exon_number 2 ; gene_id "MARVELD2--OCLN^MARVELD2^ENSG00000152939.17" ; gene_name MARVELD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162512.8" ; havana_transcript "OTTHUMT00000369583.3" ; hgnc_id "HGNC:26401" ; level 2 ; orig_coord_info "chr5,69419386,69420531,+" ; protein_id "ENSP00000323264.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "MARVELD2--OCLN^ENST00000325631.10" ; transcript_name "MARVELD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MARVELD2--OCLN HAVANA mRNA 1052 11698 . + . FI_gene_label "MARVELD2^ENSG00000152939.17" ; ID "MARVELD2--OCLN^ENST00000325631.10" ; Parent "MARVELD2--OCLN^MARVELD2^ENSG00000152939.17" ; ccdsid "CCDS34175.1" ; exon_id "ENSE00001174822.3" ; exon_number 2 ; gene_id "MARVELD2--OCLN^MARVELD2^ENSG00000152939.17" ; gene_name MARVELD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162512.8" ; havana_transcript "OTTHUMT00000369583.3" ; hgnc_id "HGNC:26401" ; level 2 ; orig_coord_info "chr5,69419386,69420531,+" ; protein_id "ENSP00000323264.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "MARVELD2--OCLN^ENST00000325631.10" ; transcript_name "MARVELD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MARVELD2--OCLN HAVANA gene 14699 35721 . + . FI_gene_label "OCLN^ENSG00000197822.12" ; ID "MARVELD2--OCLN^OCLN^ENSG00000197822.12" ; ccdsid "CCDS4006.1" ; exon_id "ENSE00001007952.1" ; exon_number 2 ; gene_id "MARVELD2--OCLN^OCLN^ENSG00000197822.12" ; gene_name OCLN ; gene_type protein_coding ; havana_gene "OTTHUMG00000099356.4" ; havana_transcript "OTTHUMT00000216794.1" ; hgnc_id "HGNC:8104" ; level 2 ; orig_coord_info "chr5,69504245,69504294,+" ; protein_id "ENSP00000347379.2" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "MARVELD2--OCLN^ENST00000355237.6" ; transcript_name "OCLN-201" ; transcript_support_level 1 ; transcript_type protein_coding
MARVELD2--OCLN HAVANA mRNA 14699 35721 . + . FI_gene_label "OCLN^ENSG00000197822.12" ; ID "MARVELD2--OCLN^ENST00000355237.6" ; Parent "MARVELD2--OCLN^OCLN^ENSG00000197822.12" ; ccdsid "CCDS4006.1" ; exon_id "ENSE00001007952.1" ; exon_number 2 ; gene_id "MARVELD2--OCLN^OCLN^ENSG00000197822.12" ; gene_name OCLN ; gene_type protein_coding ; havana_gene "OTTHUMG00000099356.4" ; havana_transcript "OTTHUMT00000216794.1" ; hgnc_id "HGNC:8104" ; level 2 ; orig_coord_info "chr5,69504245,69504294,+" ; protein_id "ENSP00000347379.2" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "MARVELD2--OCLN^ENST00000355237.6" ; transcript_name "OCLN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 HAVANA gene 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHA13 HAVANA mRNA 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^ENST00000289272.3" ; Parent "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHA13 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^ENST00000378125.4" ; Parent "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 HAVANA gene 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC1 HAVANA mRNA 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC1 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 HAVANA gene 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC2 HAVANA mRNA 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC2 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^ENST00000289272.3" ; Parent "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^ENST00000378126.4" ; Parent "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
RPS27P14--OCLN HAVANA gene 4255 25277 . + . FI_gene_label "OCLN^ENSG00000197822.12" ; ID "RPS27P14--OCLN^OCLN^ENSG00000197822.12" ; ccdsid "CCDS4006.1" ; exon_id "ENSE00001007952.1" ; exon_number 2 ; gene_id "RPS27P14--OCLN^OCLN^ENSG00000197822.12" ; gene_name OCLN ; gene_type protein_coding ; havana_gene "OTTHUMG00000099356.4" ; havana_transcript "OTTHUMT00000216794.1" ; hgnc_id "HGNC:8104" ; level 2 ; orig_coord_info "chr5,69504245,69504294,+" ; protein_id "ENSP00000347379.2" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "RPS27P14--OCLN^ENST00000355237.6" ; transcript_name "OCLN-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPS27P14--OCLN HAVANA mRNA 4255 25277 . + . FI_gene_label "OCLN^ENSG00000197822.12" ; ID "RPS27P14--OCLN^ENST00000355237.6" ; Parent "RPS27P14--OCLN^OCLN^ENSG00000197822.12" ; ccdsid "CCDS4006.1" ; exon_id "ENSE00001007952.1" ; exon_number 2 ; gene_id "RPS27P14--OCLN^OCLN^ENSG00000197822.12" ; gene_name OCLN ; gene_type protein_coding ; havana_gene "OTTHUMG00000099356.4" ; havana_transcript "OTTHUMT00000216794.1" ; hgnc_id "HGNC:8104" ; level 2 ; orig_coord_info "chr5,69504245,69504294,+" ; protein_id "ENSP00000347379.2" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "RPS27P14--OCLN^ENST00000355237.6" ; transcript_name "OCLN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SFRP4--EPDR1 HAVANA gene 13603 18360 . + . FI_gene_label "EPDR1^ENSG00000086289.12" ; ID "SFRP4--EPDR1^EPDR1^ENSG00000086289.12" ; ccdsid "CCDS5454.2" ; exon_id "ENSE00001188641.2" ; exon_number 1 ; gene_id "SFRP4--EPDR1^EPDR1^ENSG00000086289.12" ; gene_name EPDR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000102187.5" ; havana_transcript "OTTHUMT00000220037.4" ; hgnc_id "HGNC:17572" ; level 2 ; orig_coord_info "chr7,37920940,37921208,+" ; protein_id "ENSP00000199448.4" ; tag upstream_uORF basic MANE_Select appris_principal_2 CCDS ; transcript_id "SFRP4--EPDR1^ENST00000199448.9" ; transcript_name "EPDR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SFRP4--EPDR1 HAVANA mRNA 13603 18360 . + . FI_gene_label "EPDR1^ENSG00000086289.12" ; ID "SFRP4--EPDR1^ENST00000199448.9" ; Parent "SFRP4--EPDR1^EPDR1^ENSG00000086289.12" ; ccdsid "CCDS5454.2" ; exon_id "ENSE00001188641.2" ; exon_number 1 ; gene_id "SFRP4--EPDR1^EPDR1^ENSG00000086289.12" ; gene_name EPDR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000102187.5" ; havana_transcript "OTTHUMT00000220037.4" ; hgnc_id "HGNC:17572" ; level 2 ; orig_coord_info "chr7,37920940,37921208,+" ; protein_id "ENSP00000199448.4" ; tag upstream_uORF basic MANE_Select appris_principal_2 CCDS ; transcript_id "SFRP4--EPDR1^ENST00000199448.9" ; transcript_name "EPDR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SFRP4--EPDR1 HAVANA gene 3482 10602 . + . FI_gene_label "SFRP4^ENSG00000106483.12" ; ID "SFRP4--EPDR1^SFRP4^ENSG00000106483.12" ; ccdsid "CCDS5453.1" ; exon_id "ENSE00001952939.2" ; exon_number 1 ; gene_id "SFRP4--EPDR1^SFRP4^ENSG00000106483.12" ; gene_name SFRP4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023026.8" ; havana_transcript "OTTHUMT00000220017.4" ; hgnc_id "HGNC:10778" ; level 2 ; orig_coord_info "chr7,37916093,37916537,-" ; protein_id "ENSP00000410715.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SFRP4--EPDR1^ENST00000436072.7" ; transcript_name "SFRP4-201" ; transcript_support_level 1 ; transcript_type protein_coding
SFRP4--EPDR1 HAVANA mRNA 3482 10602 . + . FI_gene_label "SFRP4^ENSG00000106483.12" ; ID "SFRP4--EPDR1^ENST00000436072.7" ; Parent "SFRP4--EPDR1^SFRP4^ENSG00000106483.12" ; ccdsid "CCDS5453.1" ; exon_id "ENSE00001952939.2" ; exon_number 1 ; gene_id "SFRP4--EPDR1^SFRP4^ENSG00000106483.12" ; gene_name SFRP4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023026.8" ; havana_transcript "OTTHUMT00000220017.4" ; hgnc_id "HGNC:10778" ; level 2 ; orig_coord_info "chr7,37916093,37916537,-" ; protein_id "ENSP00000410715.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SFRP4--EPDR1^ENST00000436072.7" ; transcript_name "SFRP4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STON1--GTF2A1L HAVANA gene 15060 24138 . + . FI_gene_label "GTF2A1L^ENSG00000242441.8" ; ID "STON1--GTF2A1L^GTF2A1L^ENSG00000242441.8" ; ccdsid "CCDS46281.1" ; exon_id "ENSE00001939761.2" ; exon_number 1 ; gene_id "STON1--GTF2A1L^GTF2A1L^ENSG00000242441.8" ; gene_name GTF2A1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000152038.17" ; havana_transcript "OTTHUMT00000323852.5" ; hgnc_id "HGNC:30727" ; level 2 ; orig_coord_info "chr2,48617875,48617895,+" ; protein_id "ENSP00000384597.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STON1--GTF2A1L^ENST00000403751.8" ; transcript_name "GTF2A1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
STON1--GTF2A1L HAVANA mRNA 15060 24138 . + . FI_gene_label "GTF2A1L^ENSG00000242441.8" ; ID "STON1--GTF2A1L^ENST00000403751.8" ; Parent "STON1--GTF2A1L^GTF2A1L^ENSG00000242441.8" ; ccdsid "CCDS46281.1" ; exon_id "ENSE00001939761.2" ; exon_number 1 ; gene_id "STON1--GTF2A1L^GTF2A1L^ENSG00000242441.8" ; gene_name GTF2A1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000152038.17" ; havana_transcript "OTTHUMT00000323852.5" ; hgnc_id "HGNC:30727" ; level 2 ; orig_coord_info "chr2,48617875,48617895,+" ; protein_id "ENSP00000384597.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STON1--GTF2A1L^ENST00000403751.8" ; transcript_name "GTF2A1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STON1--GTF2A1L HAVANA gene 1772 12001 . + . FI_gene_label "STON1^ENSG00000243244.7" ; ID "STON1--GTF2A1L^STON1^ENSG00000243244.7" ; ccdsid "CCDS1841.1" ; exon_id "ENSE00003530448.1" ; exon_number 2 ; gene_id "STON1--GTF2A1L^STON1^ENSG00000243244.7" ; gene_name STON1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129169.7" ; havana_transcript "OTTHUMT00000325006.1" ; hgnc_id "HGNC:17003" ; level 2 ; orig_coord_info "chr2,48580634,48582563,+" ; protein_id "ENSP00000385273.1" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "STON1--GTF2A1L^ENST00000404752.6" ; transcript_name "STON1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STON1--GTF2A1L HAVANA mRNA 1772 12001 . + . FI_gene_label "STON1^ENSG00000243244.7" ; ID "STON1--GTF2A1L^ENST00000404752.6" ; Parent "STON1--GTF2A1L^STON1^ENSG00000243244.7" ; ccdsid "CCDS1841.1" ; exon_id "ENSE00003530448.1" ; exon_number 2 ; gene_id "STON1--GTF2A1L^STON1^ENSG00000243244.7" ; gene_name STON1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129169.7" ; havana_transcript "OTTHUMT00000325006.1" ; hgnc_id "HGNC:17003" ; level 2 ; orig_coord_info "chr2,48580634,48582563,+" ; protein_id "ENSP00000385273.1" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "STON1--GTF2A1L^ENST00000404752.6" ; transcript_name "STON1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
THRAP3P2--SLCO3A1 HAVANA gene 5116 28039 . + . FI_gene_label "SLCO3A1^ENSG00000176463.14" ; ID "THRAP3P2--SLCO3A1^SLCO3A1^ENSG00000176463.14" ; ccdsid "CCDS10371.1" ; exon_id "ENSE00001931253.2" ; exon_number 1 ; gene_id "THRAP3P2--SLCO3A1^SLCO3A1^ENSG00000176463.14" ; gene_name SLCO3A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000149846.6" ; havana_transcript "OTTHUMT00000313529.2" ; hgnc_id "HGNC:10952" ; level 2 ; orig_coord_info "chr15,91853909,91854088,+" ; protein_id "ENSP00000320634.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "THRAP3P2--SLCO3A1^ENST00000318445.11" ; transcript_name "SLCO3A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
THRAP3P2--SLCO3A1 HAVANA mRNA 5116 28039 . + . FI_gene_label "SLCO3A1^ENSG00000176463.14" ; ID "THRAP3P2--SLCO3A1^ENST00000318445.11" ; Parent "THRAP3P2--SLCO3A1^SLCO3A1^ENSG00000176463.14" ; ccdsid "CCDS10371.1" ; exon_id "ENSE00001931253.2" ; exon_number 1 ; gene_id "THRAP3P2--SLCO3A1^SLCO3A1^ENSG00000176463.14" ; gene_name SLCO3A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000149846.6" ; havana_transcript "OTTHUMT00000313529.2" ; hgnc_id "HGNC:10952" ; level 2 ; orig_coord_info "chr15,91853909,91854088,+" ; protein_id "ENSP00000320634.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "THRAP3P2--SLCO3A1^ENST00000318445.11" ; transcript_name "SLCO3A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UPK1B--IGSF11 HAVANA gene 1082 10882 . + . FI_gene_label "UPK1B^ENSG00000114638.8" ; ID "UPK1B--IGSF11^UPK1B^ENSG00000114638.8" ; ccdsid "CCDS2985.1" ; exon_id "ENSE00001012107.1" ; exon_number 2 ; gene_id "UPK1B--IGSF11^UPK1B^ENSG00000114638.8" ; gene_name UPK1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000159354.4" ; havana_transcript "OTTHUMT00000354883.3" ; hgnc_id "HGNC:12578" ; level 2 ; orig_coord_info "chr3,119186742,119186810,+" ; protein_id "ENSP00000264234.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UPK1B--IGSF11^ENST00000264234.8" ; transcript_name "UPK1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
UPK1B--IGSF11 HAVANA mRNA 1082 10882 . + . FI_gene_label "UPK1B^ENSG00000114638.8" ; ID "UPK1B--IGSF11^ENST00000264234.8" ; Parent "UPK1B--IGSF11^UPK1B^ENSG00000114638.8" ; ccdsid "CCDS2985.1" ; exon_id "ENSE00001012107.1" ; exon_number 2 ; gene_id "UPK1B--IGSF11^UPK1B^ENSG00000114638.8" ; gene_name UPK1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000159354.4" ; havana_transcript "OTTHUMT00000354883.3" ; hgnc_id "HGNC:12578" ; level 2 ; orig_coord_info "chr3,119186742,119186810,+" ; protein_id "ENSP00000264234.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UPK1B--IGSF11^ENST00000264234.8" ; transcript_name "UPK1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UPK1B--IGSF11 ENSEMBL gene 16268 32611 . + . FI_gene_label "IGSF11^ENSG00000144847.13" ; ID "UPK1B--IGSF11^IGSF11^ENSG00000144847.13" ; ccdsid "CCDS2983.1" ; exon_id "ENSE00003713849.1" ; exon_number 1 ; gene_id "UPK1B--IGSF11^IGSF11^ENSG00000144847.13" ; gene_name IGSF11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159387.5" ; hgnc_id "HGNC:16669" ; level 3 ; orig_coord_info "chr3,119105144,119105192,-" ; protein_id "ENSP00000346700.2" ; tag basic CCDS ; transcript_id "UPK1B--IGSF11^ENST00000354673.6" ; transcript_name "IGSF11-201" ; transcript_support_level 1 ; transcript_type protein_coding
UPK1B--IGSF11 ENSEMBL mRNA 16268 32611 . + . FI_gene_label "IGSF11^ENSG00000144847.13" ; ID "UPK1B--IGSF11^ENST00000354673.6" ; Parent "UPK1B--IGSF11^IGSF11^ENSG00000144847.13" ; ccdsid "CCDS2983.1" ; exon_id "ENSE00003713849.1" ; exon_number 1 ; gene_id "UPK1B--IGSF11^IGSF11^ENSG00000144847.13" ; gene_name IGSF11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159387.5" ; hgnc_id "HGNC:16669" ; level 3 ; orig_coord_info "chr3,119105144,119105192,-" ; protein_id "ENSP00000346700.2" ; tag basic CCDS ; transcript_id "UPK1B--IGSF11^ENST00000354673.6" ; transcript_name "IGSF11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC004923.1--AC127526.2 HAVANA gene 7777 10354 . + . FI_gene_label "AC127526.2^ENSG00000255367.3" ; ID "AC004923.1--AC127526.2^AC127526.2^ENSG00000255367.3" ; exon_id "ENSE00002167014.1" ; exon_number 1 ; gene_id "AC004923.1--AC127526.2^AC127526.2^ENSG00000255367.3" ; gene_name "AC127526.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000166987.2" ; havana_transcript "OTTHUMT00000392274.1" ; level 1 ; orig_coord_info "chr11,3571935,3571987,-" ; tag basic exp_conf ; transcript_id "AC004923.1--AC127526.2^ENST00000526533.1" ; transcript_name "AC127526.2-202" ; transcript_support_level 4 ; transcript_type lncRNA
AC004923.1--AC127526.2 HAVANA RNA 7777 10354 . + . FI_gene_label "AC127526.2^ENSG00000255367.3" ; ID "AC004923.1--AC127526.2^ENST00000526533.1" ; Parent "AC004923.1--AC127526.2^AC127526.2^ENSG00000255367.3" ; exon_id "ENSE00002167014.1" ; exon_number 1 ; gene_id "AC004923.1--AC127526.2^AC127526.2^ENSG00000255367.3" ; gene_name "AC127526.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000166987.2" ; havana_transcript "OTTHUMT00000392274.1" ; level 1 ; orig_coord_info "chr11,3571935,3571987,-" ; tag basic exp_conf ; transcript_id "AC004923.1--AC127526.2^ENST00000526533.1" ; transcript_name "AC127526.2-202" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
AC004923.1--AC127526.2 HAVANA gene 1001 4776 . + . FI_gene_label "AC004923.1^ENSG00000254610.3" ; ID "AC004923.1--AC127526.2^AC004923.1^ENSG00000254610.3" ; exon_id "ENSE00003779619.1" ; exon_number 1 ; gene_id "AC004923.1--AC127526.2^AC004923.1^ENSG00000254610.3" ; gene_name "AC004923.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000167303.4" ; havana_transcript "OTTHUMT00000394105.2" ; level 1 ; orig_coord_info "chr11,67955482,67955802,-" ; tag basic exp_conf ; transcript_id "AC004923.1--AC127526.2^ENST00000527543.2" ; transcript_name "AC004923.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
AC004923.1--AC127526.2 HAVANA RNA 1001 4776 . + . FI_gene_label "AC004923.1^ENSG00000254610.3" ; ID "AC004923.1--AC127526.2^ENST00000527543.2" ; Parent "AC004923.1--AC127526.2^AC004923.1^ENSG00000254610.3" ; exon_id "ENSE00003779619.1" ; exon_number 1 ; gene_id "AC004923.1--AC127526.2^AC004923.1^ENSG00000254610.3" ; gene_name "AC004923.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000167303.4" ; havana_transcript "OTTHUMT00000394105.2" ; level 1 ; orig_coord_info "chr11,67955482,67955802,-" ; tag basic exp_conf ; transcript_id "AC004923.1--AC127526.2^ENST00000527543.2" ; transcript_name "AC004923.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
AC026341.1--GAP43 HAVANA gene 7005 13358 . + . FI_gene_label "AC026341.1^ENSG00000242880.2" ; ID "AC026341.1--GAP43^AC026341.1^ENSG00000242880.2" ; exon_id "ENSE00003862193.1" ; exon_number 1 ; gene_id "AC026341.1--GAP43^AC026341.1^ENSG00000242880.2" ; gene_name "AC026341.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000159303.9" ; havana_transcript "OTTHUMT00000354479.2" ; level 2 ; orig_coord_info "chr3,115239879,115239982,+" ; tag basic TAGENE ; transcript_id "AC026341.1--GAP43^ENST00000459855.2" ; transcript_name "AC026341.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
AC026341.1--GAP43 HAVANA RNA 7005 13358 . + . FI_gene_label "AC026341.1^ENSG00000242880.2" ; ID "AC026341.1--GAP43^ENST00000459855.2" ; Parent "AC026341.1--GAP43^AC026341.1^ENSG00000242880.2" ; exon_id "ENSE00003862193.1" ; exon_number 1 ; gene_id "AC026341.1--GAP43^AC026341.1^ENSG00000242880.2" ; gene_name "AC026341.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000159303.9" ; havana_transcript "OTTHUMT00000354479.2" ; level 2 ; orig_coord_info "chr3,115239879,115239982,+" ; tag basic TAGENE ; transcript_id "AC026341.1--GAP43^ENST00000459855.2" ; transcript_name "AC026341.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
AC079781.4--ASNS HAVANA gene 1001 1219 . + . FI_gene_label "AC079781.4^ENSG00000284627.1" ; ID "AC079781.4--ASNS^AC079781.4^ENSG00000284627.1" ; exon_id "ENSE00003813582.1" ; exon_number 1 ; gene_id "AC079781.4--ASNS^AC079781.4^ENSG00000284627.1" ; gene_name "AC079781.4" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000192224.1" ; havana_transcript "OTTHUMT00000492944.1" ; level 1 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr7,97928082,97928300,-" ; tag non_submitted_evidence pseudo_consens basic ; transcript_id "AC079781.4--ASNS^ENST00000641908.1" ; transcript_name "AC079781.4-201" ; transcript_type transcribed_unprocessed_pseudogene
AC079781.4--ASNS HAVANA RNA 1001 1219 . + . FI_gene_label "AC079781.4^ENSG00000284627.1" ; ID "AC079781.4--ASNS^ENST00000641908.1" ; Parent "AC079781.4--ASNS^AC079781.4^ENSG00000284627.1" ; exon_id "ENSE00003813582.1" ; exon_number 1 ; gene_id "AC079781.4--ASNS^AC079781.4^ENSG00000284627.1" ; gene_name "AC079781.4" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000192224.1" ; havana_transcript "OTTHUMT00000492944.1" ; level 1 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr7,97928082,97928300,-" ; tag non_submitted_evidence pseudo_consens basic ; transcript_id "AC079781.4--ASNS^ENST00000641908.1" ; transcript_name "AC079781.4-201" ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC090572.2--CNBD1 HAVANA gene 1001 6761 . + . FI_gene_label "AC090572.2^ENSG00000253778.1" ; ID "AC090572.2--CNBD1^AC090572.2^ENSG00000253778.1" ; exon_id "ENSE00002110141.1" ; exon_number 1 ; gene_id "AC090572.2--CNBD1^AC090572.2^ENSG00000253778.1" ; gene_name "AC090572.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000163741.1" ; havana_transcript "OTTHUMT00000375111.1" ; level 2 ; orig_coord_info "chr8,86765935,86766097,+" ; tag basic ; transcript_id "AC090572.2--CNBD1^ENST00000520649.1" ; transcript_name "AC090572.2-201" ; transcript_support_level 3 ; transcript_type lncRNA
AC090572.2--CNBD1 HAVANA RNA 1001 6761 . + . FI_gene_label "AC090572.2^ENSG00000253778.1" ; ID "AC090572.2--CNBD1^ENST00000520649.1" ; Parent "AC090572.2--CNBD1^AC090572.2^ENSG00000253778.1" ; exon_id "ENSE00002110141.1" ; exon_number 1 ; gene_id "AC090572.2--CNBD1^AC090572.2^ENSG00000253778.1" ; gene_name "AC090572.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000163741.1" ; havana_transcript "OTTHUMT00000375111.1" ; level 2 ; orig_coord_info "chr8,86765935,86766097,+" ; tag basic ; transcript_id "AC090572.2--CNBD1^ENST00000520649.1" ; transcript_name "AC090572.2-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1 HAVANA RNA 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^ENST00000467530.5" ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
AC138409.2--NAIP HAVANA gene 4397 11022 . + . FI_gene_label "AC138409.2^ENSG00000215158.9" ; ID "AC138409.2--NAIP^AC138409.2^ENSG00000215158.9" ; exon_id "ENSE00002080508.1" ; exon_number 1 ; gene_id "AC138409.2--NAIP^AC138409.2^ENSG00000215158.9" ; gene_name "AC138409.2" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000162181.1" ; havana_transcript "OTTHUMT00000367774.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr5,34218295,34218343,-" ; tag basic ; transcript_id "AC138409.2--NAIP^ENST00000507274.1" ; transcript_name "AC138409.2-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
AC138409.2--NAIP HAVANA RNA 4397 11022 . + . FI_gene_label "AC138409.2^ENSG00000215158.9" ; ID "AC138409.2--NAIP^ENST00000507274.1" ; Parent "AC138409.2--NAIP^AC138409.2^ENSG00000215158.9" ; exon_id "ENSE00002080508.1" ; exon_number 1 ; gene_id "AC138409.2--NAIP^AC138409.2^ENSG00000215158.9" ; gene_name "AC138409.2" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000162181.1" ; havana_transcript "OTTHUMT00000367774.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr5,34218295,34218343,-" ; tag basic ; transcript_id "AC138409.2--NAIP^ENST00000507274.1" ; transcript_name "AC138409.2-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AL512590.2--CCDC180 HAVANA gene 1001 11243 . + . FI_gene_label "AL512590.2^ENSG00000254633.2" ; ID "AL512590.2--CCDC180^AL512590.2^ENSG00000254633.2" ; exon_id "ENSE00002146032.2" ; exon_number 1 ; gene_id "AL512590.2--CCDC180^AL512590.2^ENSG00000254633.2" ; gene_name "AL512590.2" ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000167000.2" ; havana_transcript "OTTHUMT00000392365.2" ; level 2 ; orig_coord_info "chr9,97276569,97276697,+" ; tag basic ; transcript_id "AL512590.2--CCDC180^ENST00000531758.2" ; transcript_name "AL512590.2-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
AL512590.2--CCDC180 HAVANA RNA 1001 11243 . + . FI_gene_label "AL512590.2^ENSG00000254633.2" ; ID "AL512590.2--CCDC180^ENST00000531758.2" ; Parent "AL512590.2--CCDC180^AL512590.2^ENSG00000254633.2" ; exon_id "ENSE00002146032.2" ; exon_number 1 ; gene_id "AL512590.2--CCDC180^AL512590.2^ENSG00000254633.2" ; gene_name "AL512590.2" ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000167000.2" ; havana_transcript "OTTHUMT00000392365.2" ; level 2 ; orig_coord_info "chr9,97276569,97276697,+" ; tag basic ; transcript_id "AL512590.2--CCDC180^ENST00000531758.2" ; transcript_name "AL512590.2-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
L1 and L2 created:
AP006294.2--ENPP7P3 HAVANA gene 4210 4450 . + . FI_gene_label "ENPP7P3^ENSG00000248618.1" ; ID "AP006294.2--ENPP7P3^ENPP7P3^ENSG00000248618.1" ; exon_id "ENSE00002066185.1" ; exon_number 1 ; gene_id "AP006294.2--ENPP7P3^ENPP7P3^ENSG00000248618.1" ; gene_name ENPP7P3 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000159714.4" ; havana_transcript "OTTHUMT00000357026.3" ; hgnc_id "HGNC:48686" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr3,130167790,130168030,-" ; tag basic ; transcript_id "AP006294.2--ENPP7P3^ENST00000509123.1" ; transcript_name "ENPP7P3-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
AP006294.2--ENPP7P3 HAVANA RNA 4210 4450 . + . FI_gene_label "ENPP7P3^ENSG00000248618.1" ; ID "AP006294.2--ENPP7P3^ENST00000509123.1" ; Parent "AP006294.2--ENPP7P3^ENPP7P3^ENSG00000248618.1" ; exon_id "ENSE00002066185.1" ; exon_number 1 ; gene_id "AP006294.2--ENPP7P3^ENPP7P3^ENSG00000248618.1" ; gene_name ENPP7P3 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000159714.4" ; havana_transcript "OTTHUMT00000357026.3" ; hgnc_id "HGNC:48686" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr3,130167790,130168030,-" ; tag basic ; transcript_id "AP006294.2--ENPP7P3^ENST00000509123.1" ; transcript_name "ENPP7P3-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
AP006294.2--ENPP7P3 HAVANA gene 1001 1209 . + . FI_gene_label "AP006294.2^ENSG00000284639.1" ; ID "AP006294.2--ENPP7P3^AP006294.2^ENSG00000284639.1" ; exon_id "ENSE00003812576.1" ; exon_number 1 ; gene_id "AP006294.2--ENPP7P3^AP006294.2^ENSG00000284639.1" ; gene_name "AP006294.2" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000192241.1" ; havana_transcript "OTTHUMT00000492980.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr11,3580927,3581135,-" ; tag non_submitted_evidence basic ; transcript_id "AP006294.2--ENPP7P3^ENST00000641667.1" ; transcript_name "AP006294.2-201" ; transcript_type transcribed_unprocessed_pseudogene
AP006294.2--ENPP7P3 HAVANA RNA 1001 1209 . + . FI_gene_label "AP006294.2^ENSG00000284639.1" ; ID "AP006294.2--ENPP7P3^ENST00000641667.1" ; Parent "AP006294.2--ENPP7P3^AP006294.2^ENSG00000284639.1" ; exon_id "ENSE00003812576.1" ; exon_number 1 ; gene_id "AP006294.2--ENPP7P3^AP006294.2^ENSG00000284639.1" ; gene_name "AP006294.2" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000192241.1" ; havana_transcript "OTTHUMT00000492980.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr11,3580927,3581135,-" ; tag non_submitted_evidence basic ; transcript_id "AP006294.2--ENPP7P3^ENST00000641667.1" ; transcript_name "AP006294.2-201" ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AP006294.2--LINC00665 HAVANA gene 4246 18758 . + . FI_gene_label "LINC00665^ENSG00000232677.9" ; ID "AP006294.2--LINC00665^LINC00665^ENSG00000232677.9" ; exon_id "ENSE00003882974.1" ; exon_number 1 ; gene_id "AP006294.2--LINC00665^LINC00665^ENSG00000232677.9" ; gene_name LINC00665 ; gene_type lncRNA ; havana_gene "OTTHUMG00000048145.6" ; havana_transcript "OTTHUMT00000109548.1" ; hgnc_id "HGNC:44323" ; level 1 ; orig_coord_info "chr19,36331447,36331734,-" ; tag exp_conf ; transcript_id "AP006294.2--LINC00665^ENST00000412740.7" ; transcript_name "LINC00665-201" ; transcript_support_level 3 ; transcript_type lncRNA
AP006294.2--LINC00665 HAVANA RNA 4246 18758 . + . FI_gene_label "LINC00665^ENSG00000232677.9" ; ID "AP006294.2--LINC00665^ENST00000412740.7" ; Parent "AP006294.2--LINC00665^LINC00665^ENSG00000232677.9" ; exon_id "ENSE00003882974.1" ; exon_number 1 ; gene_id "AP006294.2--LINC00665^LINC00665^ENSG00000232677.9" ; gene_name LINC00665 ; gene_type lncRNA ; havana_gene "OTTHUMG00000048145.6" ; havana_transcript "OTTHUMT00000109548.1" ; hgnc_id "HGNC:44323" ; level 1 ; orig_coord_info "chr19,36331447,36331734,-" ; tag exp_conf ; transcript_id "AP006294.2--LINC00665^ENST00000412740.7" ; transcript_name "LINC00665-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
AP006294.2--LINC00665 HAVANA gene 1001 1209 . + . FI_gene_label "AP006294.2^ENSG00000284639.1" ; ID "AP006294.2--LINC00665^AP006294.2^ENSG00000284639.1" ; exon_id "ENSE00003812576.1" ; exon_number 1 ; gene_id "AP006294.2--LINC00665^AP006294.2^ENSG00000284639.1" ; gene_name "AP006294.2" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000192241.1" ; havana_transcript "OTTHUMT00000492980.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr11,3580927,3581135,-" ; tag non_submitted_evidence basic ; transcript_id "AP006294.2--LINC00665^ENST00000641667.1" ; transcript_name "AP006294.2-201" ; transcript_type transcribed_unprocessed_pseudogene
AP006294.2--LINC00665 HAVANA RNA 1001 1209 . + . FI_gene_label "AP006294.2^ENSG00000284639.1" ; ID "AP006294.2--LINC00665^ENST00000641667.1" ; Parent "AP006294.2--LINC00665^AP006294.2^ENSG00000284639.1" ; exon_id "ENSE00003812576.1" ; exon_number 1 ; gene_id "AP006294.2--LINC00665^AP006294.2^ENSG00000284639.1" ; gene_name "AP006294.2" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000192241.1" ; havana_transcript "OTTHUMT00000492980.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr11,3580927,3581135,-" ; tag non_submitted_evidence basic ; transcript_id "AP006294.2--LINC00665^ENST00000641667.1" ; transcript_name "AP006294.2-201" ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
C1QTNF7-AS1--LINC00504 HAVANA gene 1001 8907 . + . FI_gene_label "C1QTNF7-AS1^ENSG00000249252.5" ; ID "C1QTNF7-AS1--LINC00504^C1QTNF7-AS1^ENSG00000249252.5" ; exon_id "ENSE00002037115.1" ; exon_number 1 ; gene_id "C1QTNF7-AS1--LINC00504^C1QTNF7-AS1^ENSG00000249252.5" ; gene_name "C1QTNF7-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000160132.3" ; havana_transcript "OTTHUMT00000359351.2" ; hgnc_id "HGNC:40683" ; level 2 ; orig_coord_info "chr4,15427829,15427914,-" ; tag basic ; transcript_id "C1QTNF7-AS1--LINC00504^ENST00000502344.5" ; transcript_name "C1QTNF7-AS1-201" ; transcript_support_level 3 ; transcript_type lncRNA
C1QTNF7-AS1--LINC00504 HAVANA RNA 1001 8907 . + . FI_gene_label "C1QTNF7-AS1^ENSG00000249252.5" ; ID "C1QTNF7-AS1--LINC00504^ENST00000502344.5" ; Parent "C1QTNF7-AS1--LINC00504^C1QTNF7-AS1^ENSG00000249252.5" ; exon_id "ENSE00002037115.1" ; exon_number 1 ; gene_id "C1QTNF7-AS1--LINC00504^C1QTNF7-AS1^ENSG00000249252.5" ; gene_name "C1QTNF7-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000160132.3" ; havana_transcript "OTTHUMT00000359351.2" ; hgnc_id "HGNC:40683" ; level 2 ; orig_coord_info "chr4,15427829,15427914,-" ; tag basic ; transcript_id "C1QTNF7-AS1--LINC00504^ENST00000502344.5" ; transcript_name "C1QTNF7-AS1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
C1QTNF7-AS1--LINC00504 HAVANA gene 11908 25305 . + . FI_gene_label "LINC00504^ENSG00000248360.7" ; ID "C1QTNF7-AS1--LINC00504^LINC00504^ENSG00000248360.7" ; exon_id "ENSE00002061625.1" ; exon_number 1 ; gene_id "C1QTNF7-AS1--LINC00504^LINC00504^ENSG00000248360.7" ; gene_name LINC00504 ; gene_type lncRNA ; havana_gene "OTTHUMG00000160121.6" ; havana_transcript "OTTHUMT00000360859.2" ; hgnc_id "HGNC:43555" ; level 2 ; orig_coord_info "chr4,14888059,14888169,-" ; tag basic ; transcript_id "C1QTNF7-AS1--LINC00504^ENST00000505089.6" ; transcript_name "LINC00504-201" ; transcript_support_level 2 ; transcript_type lncRNA
C1QTNF7-AS1--LINC00504 HAVANA RNA 11908 25305 . + . FI_gene_label "LINC00504^ENSG00000248360.7" ; ID "C1QTNF7-AS1--LINC00504^ENST00000505089.6" ; Parent "C1QTNF7-AS1--LINC00504^LINC00504^ENSG00000248360.7" ; exon_id "ENSE00002061625.1" ; exon_number 1 ; gene_id "C1QTNF7-AS1--LINC00504^LINC00504^ENSG00000248360.7" ; gene_name LINC00504 ; gene_type lncRNA ; havana_gene "OTTHUMG00000160121.6" ; havana_transcript "OTTHUMT00000360859.2" ; hgnc_id "HGNC:43555" ; level 2 ; orig_coord_info "chr4,14888059,14888169,-" ; tag basic ; transcript_id "C1QTNF7-AS1--LINC00504^ENST00000505089.6" ; transcript_name "LINC00504-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
GOLGA6L10--GOLGA2P6 HAVANA gene 12782 20364 . + . FI_gene_label "GOLGA2P6^ENSG00000241621.1" ; ID "GOLGA6L10--GOLGA2P6^GOLGA2P6^ENSG00000241621.1" ; exon_id "ENSE00001603136.1" ; exon_number 1 ; gene_id "GOLGA6L10--GOLGA2P6^GOLGA2P6^ENSG00000241621.1" ; gene_name GOLGA2P6 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000017890.1" ; havana_transcript "OTTHUMT00000047421.1" ; hgnc_id "HGNC:44948" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chr10,30374327,30374386,-" ; tag pseudo_consens basic ; transcript_id "GOLGA6L10--GOLGA2P6^ENST00000340929.4" ; transcript_name "GOLGA2P6-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
GOLGA6L10--GOLGA2P6 HAVANA RNA 12782 20364 . + . FI_gene_label "GOLGA2P6^ENSG00000241621.1" ; ID "GOLGA6L10--GOLGA2P6^ENST00000340929.4" ; Parent "GOLGA6L10--GOLGA2P6^GOLGA2P6^ENSG00000241621.1" ; exon_id "ENSE00001603136.1" ; exon_number 1 ; gene_id "GOLGA6L10--GOLGA2P6^GOLGA2P6^ENSG00000241621.1" ; gene_name GOLGA2P6 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000017890.1" ; havana_transcript "OTTHUMT00000047421.1" ; hgnc_id "HGNC:44948" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chr10,30374327,30374386,-" ; tag pseudo_consens basic ; transcript_id "GOLGA6L10--GOLGA2P6^ENST00000340929.4" ; transcript_name "GOLGA2P6-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
GTF2A1L--STON1-GTF2A1L HAVANA gene 14395 15764 . + . FI_gene_label "STON1-GTF2A1L^ENSG00000068781.21" ; ID "GTF2A1L--STON1-GTF2A1L^STON1-GTF2A1L^ENSG00000068781.21" ; exon_id "ENSE00001916353.1" ; exon_number 1 ; gene_id "GTF2A1L--STON1-GTF2A1L^STON1-GTF2A1L^ENSG00000068781.21" ; gene_name "STON1-GTF2A1L" ; gene_type protein_coding ; havana_gene "OTTHUMG00000152037.6" ; havana_transcript "OTTHUMT00000325207.1" ; hgnc_id "HGNC:30651" ; level 1 ; orig_coord_info "chr2,48768954,48769121,+" ; tag exp_conf ; transcript_id "GTF2A1L--STON1-GTF2A1L^ENST00000463040.5" ; transcript_name "STON1-GTF2A1L-205" ; transcript_support_level 5 ; transcript_type processed_transcript
GTF2A1L--STON1-GTF2A1L HAVANA RNA 14395 15764 . + . FI_gene_label "STON1-GTF2A1L^ENSG00000068781.21" ; ID "GTF2A1L--STON1-GTF2A1L^ENST00000463040.5" ; Parent "GTF2A1L--STON1-GTF2A1L^STON1-GTF2A1L^ENSG00000068781.21" ; exon_id "ENSE00001916353.1" ; exon_number 1 ; gene_id "GTF2A1L--STON1-GTF2A1L^STON1-GTF2A1L^ENSG00000068781.21" ; gene_name "STON1-GTF2A1L" ; gene_type protein_coding ; havana_gene "OTTHUMG00000152037.6" ; havana_transcript "OTTHUMT00000325207.1" ; hgnc_id "HGNC:30651" ; level 1 ; orig_coord_info "chr2,48768954,48769121,+" ; tag exp_conf ; transcript_id "GTF2A1L--STON1-GTF2A1L^ENST00000463040.5" ; transcript_name "STON1-GTF2A1L-205" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
RPS27P14--OCLN HAVANA gene 1001 1254 . + . FI_gene_label "RPS27P14^ENSG00000244717.1" ; ID "RPS27P14--OCLN^RPS27P14^ENSG00000244717.1" ; exon_id "ENSE00001926559.1" ; exon_number 1 ; gene_id "RPS27P14--OCLN^RPS27P14^ENSG00000244717.1" ; gene_name RPS27P14 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000157737.1" ; havana_transcript "OTTHUMT00000349535.1" ; hgnc_id "HGNC:35923" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr5,69469883,69470136,+" ; tag pseudo_consens basic ; transcript_id "RPS27P14--OCLN^ENST00000496370.1" ; transcript_name "RPS27P14-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
RPS27P14--OCLN HAVANA RNA 1001 1254 . + . FI_gene_label "RPS27P14^ENSG00000244717.1" ; ID "RPS27P14--OCLN^ENST00000496370.1" ; Parent "RPS27P14--OCLN^RPS27P14^ENSG00000244717.1" ; exon_id "ENSE00001926559.1" ; exon_number 1 ; gene_id "RPS27P14--OCLN^RPS27P14^ENSG00000244717.1" ; gene_name RPS27P14 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000157737.1" ; havana_transcript "OTTHUMT00000349535.1" ; hgnc_id "HGNC:35923" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr5,69469883,69470136,+" ; tag pseudo_consens basic ; transcript_id "RPS27P14--OCLN^ENST00000496370.1" ; transcript_name "RPS27P14-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
THRAP3P2--SLCO3A1 HAVANA gene 1001 2115 . + . FI_gene_label "THRAP3P2^ENSG00000259057.1" ; ID "THRAP3P2--SLCO3A1^THRAP3P2^ENSG00000259057.1" ; exon_id "ENSE00002509993.1" ; exon_number 1 ; gene_id "THRAP3P2--SLCO3A1^THRAP3P2^ENSG00000259057.1" ; gene_name THRAP3P2 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000171697.1" ; havana_transcript "OTTHUMT00000414803.1" ; hgnc_id "HGNC:54830" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr15,91742841,91743955,-" ; tag pseudo_consens basic ; transcript_id "THRAP3P2--SLCO3A1^ENST00000556012.1" ; transcript_name "THRAP3P2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
THRAP3P2--SLCO3A1 HAVANA RNA 1001 2115 . + . FI_gene_label "THRAP3P2^ENSG00000259057.1" ; ID "THRAP3P2--SLCO3A1^ENST00000556012.1" ; Parent "THRAP3P2--SLCO3A1^THRAP3P2^ENSG00000259057.1" ; exon_id "ENSE00002509993.1" ; exon_number 1 ; gene_id "THRAP3P2--SLCO3A1^THRAP3P2^ENSG00000259057.1" ; gene_name THRAP3P2 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000171697.1" ; havana_transcript "OTTHUMT00000414803.1" ; hgnc_id "HGNC:54830" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr15,91742841,91743955,-" ; tag pseudo_consens basic ; transcript_id "THRAP3P2--SLCO3A1^ENST00000556012.1" ; transcript_name "THRAP3P2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
412 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
660 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 41 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 0 second) ------
GFF3 file parsed