Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5b456d70-fab3-4fcc-916c-bc437f411fba/5f/4d32fc1f4ec7fe5ef236279e51ead4/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/d45deb1e0e7903e4626dfd76b51801/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/d45deb1e0e7903e4626dfd76b51801/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/4d2a5c3afbb7c4ebe87183a9a307b4/tih_rna_sample_00088_23H5VFLT4_s02.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/2dad3b3322577612401e31c91889d7/tih_rna_sample_00088_23H5VFLT4_s02.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
PEF1--COL16A1
starfusion
SRP54--TTC6
starfusion
arriba
GALNT8--CEP128
starfusion
arriba
TLK2--AC240565.1
starfusion
TLK2P1--AC110079.1
starfusion
TVP23C--CDRT4
starfusion
arriba
BAG4--AC084024.4
starfusion
AC009396.1--NAA30
starfusion
PMS2P6--CCDC146
starfusion
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHA13
arriba
AC092807.3--DDAH1
arriba
ZCCHC14--LSM1
arriba
WIPF2--NRXN3
arriba
CRYZL2P--SEC16B
arriba
0%| | 0/16 [00:00<?, ?it/s]
Processing PEF1--COL16A1: 0%| | 0/16 [00:00<?, ?it/s]
Processing PEF1--COL16A1: 6%|▋ | 1/16 [00:00<00:01, 9.26it/s]
Processing SRP54--TTC6: 6%|▋ | 1/16 [00:00<00:01, 9.26it/s]
Processing SRP54--TTC6: 12%|█▎ | 2/16 [00:00<00:01, 9.49it/s]
Processing GALNT8--CEP128: 12%|█▎ | 2/16 [00:00<00:01, 9.49it/s]
Processing GALNT8--CEP128: 19%|█▉ | 3/16 [00:00<00:01, 9.56it/s]
Processing TLK2--AC240565.1: 19%|█▉ | 3/16 [00:00<00:01, 9.56it/s]
Processing TLK2--AC240565.1: 25%|██▌ | 4/16 [00:00<00:01, 9.60it/s]
Processing TLK2P1--AC110079.1: 25%|██▌ | 4/16 [00:00<00:01, 9.60it/s]
Processing TLK2P1--AC110079.1: 31%|███▏ | 5/16 [00:00<00:01, 9.62it/s]
Processing TVP23C--CDRT4: 31%|███▏ | 5/16 [00:00<00:01, 9.62it/s]
Processing TVP23C--CDRT4: 38%|███▊ | 6/16 [00:00<00:01, 9.63it/s]
Processing BAG4--AC084024.4: 38%|███▊ | 6/16 [00:00<00:01, 9.63it/s]
Processing BAG4--AC084024.4: 44%|████▍ | 7/16 [00:00<00:00, 9.64it/s]
Processing AC009396.1--NAA30: 44%|████▍ | 7/16 [00:00<00:00, 9.64it/s]
Processing AC009396.1--NAA30: 50%|█████ | 8/16 [00:00<00:00, 9.64it/s]
Processing PMS2P6--CCDC146: 50%|█████ | 8/16 [00:00<00:00, 9.64it/s]
Processing PMS2P6--CCDC146: 56%|█████▋ | 9/16 [00:00<00:00, 9.65it/s]
Processing PCDHA4--PCDHAC2: 56%|█████▋ | 9/16 [00:00<00:00, 9.65it/s]
Processing PCDHA4--PCDHAC2: 62%|██████▎ | 10/16 [00:01<00:00, 9.65it/s]
Processing PCDHA4--PCDHAC1: 62%|██████▎ | 10/16 [00:01<00:00, 9.65it/s]
Processing PCDHA4--PCDHAC1: 69%|██████▉ | 11/16 [00:01<00:00, 9.65it/s]
Processing PCDHA4--PCDHA13: 69%|██████▉ | 11/16 [00:01<00:00, 9.65it/s]
Processing PCDHA4--PCDHA13: 75%|███████▌ | 12/16 [00:01<00:00, 9.65it/s]
Processing AC092807.3--DDAH1: 75%|███████▌ | 12/16 [00:01<00:00, 9.65it/s]
Processing AC092807.3--DDAH1: 81%|████████▏ | 13/16 [00:01<00:00, 9.65it/s]
Processing ZCCHC14--LSM1: 81%|████████▏ | 13/16 [00:01<00:00, 9.65it/s]
Processing ZCCHC14--LSM1: 88%|████████▊ | 14/16 [00:01<00:00, 9.65it/s]
Processing WIPF2--NRXN3: 88%|████████▊ | 14/16 [00:01<00:00, 9.65it/s]
Processing WIPF2--NRXN3: 94%|█████████▍| 15/16 [00:01<00:00, 9.65it/s]
Processing CRYZL2P--SEC16B: 94%|█████████▍| 15/16 [00:01<00:00, 9.65it/s]
Processing CRYZL2P--SEC16B: 100%|██████████| 16/16 [00:01<00:00, 9.65it/s]
Processing CRYZL2P--SEC16B: 100%|██████████| 16/16 [00:01<00:00, 9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory