Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5b456d70-fab3-4fcc-916c-bc437f411fba/5f/4d32fc1f4ec7fe5ef236279e51ead4/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/d45deb1e0e7903e4626dfd76b51801/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/d45deb1e0e7903e4626dfd76b51801/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/4d2a5c3afbb7c4ebe87183a9a307b4/tih_rna_sample_00088_23H5VFLT4_s02.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/2dad3b3322577612401e31c91889d7/tih_rna_sample_00088_23H5VFLT4_s02.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
PEF1--COL16A1
starfusion
SRP54--TTC6
starfusion
arriba
GALNT8--CEP128
starfusion
arriba
TLK2--AC240565.1
starfusion
TLK2P1--AC110079.1
starfusion
TVP23C--CDRT4
starfusion
arriba
BAG4--AC084024.4
starfusion
AC009396.1--NAA30
starfusion
PMS2P6--CCDC146
starfusion
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHA13
arriba
AC092807.3--DDAH1
arriba
ZCCHC14--LSM1
arriba
WIPF2--NRXN3
arriba
CRYZL2P--SEC16B
arriba

  0%|          | 0/16 [00:00<?, ?it/s]
Processing PEF1--COL16A1:   0%|          | 0/16 [00:00<?, ?it/s]
Processing PEF1--COL16A1:   6%|▋         | 1/16 [00:00<00:01,  9.26it/s]
Processing SRP54--TTC6:   6%|▋         | 1/16 [00:00<00:01,  9.26it/s]  
Processing SRP54--TTC6:  12%|█▎        | 2/16 [00:00<00:01,  9.49it/s]
Processing GALNT8--CEP128:  12%|█▎        | 2/16 [00:00<00:01,  9.49it/s]
Processing GALNT8--CEP128:  19%|█▉        | 3/16 [00:00<00:01,  9.56it/s]
Processing TLK2--AC240565.1:  19%|█▉        | 3/16 [00:00<00:01,  9.56it/s]
Processing TLK2--AC240565.1:  25%|██▌       | 4/16 [00:00<00:01,  9.60it/s]
Processing TLK2P1--AC110079.1:  25%|██▌       | 4/16 [00:00<00:01,  9.60it/s]
Processing TLK2P1--AC110079.1:  31%|███▏      | 5/16 [00:00<00:01,  9.62it/s]
Processing TVP23C--CDRT4:  31%|███▏      | 5/16 [00:00<00:01,  9.62it/s]     
Processing TVP23C--CDRT4:  38%|███▊      | 6/16 [00:00<00:01,  9.63it/s]
Processing BAG4--AC084024.4:  38%|███▊      | 6/16 [00:00<00:01,  9.63it/s]
Processing BAG4--AC084024.4:  44%|████▍     | 7/16 [00:00<00:00,  9.64it/s]
Processing AC009396.1--NAA30:  44%|████▍     | 7/16 [00:00<00:00,  9.64it/s]
Processing AC009396.1--NAA30:  50%|█████     | 8/16 [00:00<00:00,  9.64it/s]
Processing PMS2P6--CCDC146:  50%|█████     | 8/16 [00:00<00:00,  9.64it/s]  
Processing PMS2P6--CCDC146:  56%|█████▋    | 9/16 [00:00<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC2:  56%|█████▋    | 9/16 [00:00<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC2:  62%|██████▎   | 10/16 [00:01<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC1:  62%|██████▎   | 10/16 [00:01<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC1:  69%|██████▉   | 11/16 [00:01<00:00,  9.65it/s]
Processing PCDHA4--PCDHA13:  69%|██████▉   | 11/16 [00:01<00:00,  9.65it/s]
Processing PCDHA4--PCDHA13:  75%|███████▌  | 12/16 [00:01<00:00,  9.65it/s]
Processing AC092807.3--DDAH1:  75%|███████▌  | 12/16 [00:01<00:00,  9.65it/s]
Processing AC092807.3--DDAH1:  81%|████████▏ | 13/16 [00:01<00:00,  9.65it/s]
Processing ZCCHC14--LSM1:  81%|████████▏ | 13/16 [00:01<00:00,  9.65it/s]    
Processing ZCCHC14--LSM1:  88%|████████▊ | 14/16 [00:01<00:00,  9.65it/s]
Processing WIPF2--NRXN3:  88%|████████▊ | 14/16 [00:01<00:00,  9.65it/s] 
Processing WIPF2--NRXN3:  94%|█████████▍| 15/16 [00:01<00:00,  9.65it/s]
Processing CRYZL2P--SEC16B:  94%|█████████▍| 15/16 [00:01<00:00,  9.65it/s]
Processing CRYZL2P--SEC16B: 100%|██████████| 16/16 [00:01<00:00,  9.65it/s]
Processing CRYZL2P--SEC16B: 100%|██████████| 16/16 [00:01<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory