.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV (V4_0001_RNA_0001_23H5VFLT4_s13)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/5fb6bc0c6ac18f3278f222598c800d/.command.sh
Size: 363 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV (V4_0001_RNA_0001_23H5VFLT4_s13)
Attempt

Content

#!/bin/bash -euo pipefail
agat_convert_sp_gff2tsv.pl \
    --gff V4_0001_RNA_0001_23H5VFLT4_s13.gtf \
    --output V4_0001_RNA_0001_23H5VFLT4_s13.tsv \


cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV":
    agat: $(agat_convert_sp_gff2tsv.pl --help | sed '3!d; s/.*v//' | sed 's/ .*//')
END_VERSIONS