Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/9055d4b0da3d2fb2a1c6cf662c7616/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/20d8e1aba764cd26bb30f02f5dc1ce/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/20d8e1aba764cd26bb30f02f5dc1ce/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/65317c0d7e01654d97a67aea9d5671/tih_rna_sample_00089_23H5VFLT4_s39.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/60cca2875f49132e8930798965d69a/tih_rna_sample_00089_23H5VFLT4_s39.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00089_23H5VFLT4_s39.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (16905863) splicing reads. 273722 splicing junctions. 187494 known splicing junctions. 86228 novel splicing junctions.
sampling 10% (33811726) splicing reads. 339137 splicing junctions. 200566 known splicing junctions. 138571 novel splicing junctions.
sampling 15% (50717589) splicing reads. 386476 splicing junctions. 207668 known splicing junctions. 178808 novel splicing junctions.
sampling 20% (67623453) splicing reads. 423984 splicing junctions. 212477 known splicing junctions. 211507 novel splicing junctions.
sampling 25% (84529316) splicing reads. 454994 splicing junctions. 215998 known splicing junctions. 238996 novel splicing junctions.
sampling 30% (101435179) splicing reads. 481174 splicing junctions. 218682 known splicing junctions. 262492 novel splicing junctions.
sampling 35% (118341043) splicing reads. 503883 splicing junctions. 220809 known splicing junctions. 283074 novel splicing junctions.
sampling 40% (135246906) splicing reads. 523593 splicing junctions. 222579 known splicing junctions. 301014 novel splicing junctions.
sampling 45% (152152769) splicing reads. 540525 splicing junctions. 224020 known splicing junctions. 316505 novel splicing junctions.
sampling 50% (169058633) splicing reads. 555512 splicing junctions. 225246 known splicing junctions. 330266 novel splicing junctions.
sampling 55% (185964496) splicing reads. 568680 splicing junctions. 226258 known splicing junctions. 342422 novel splicing junctions.
sampling 60% (202870359) splicing reads. 580264 splicing junctions. 227179 known splicing junctions. 353085 novel splicing junctions.
sampling 65% (219776222) splicing reads. 590323 splicing junctions. 227946 known splicing junctions. 362377 novel splicing junctions.
sampling 70% (236682086) splicing reads. 599264 splicing junctions. 228586 known splicing junctions. 370678 novel splicing junctions.
sampling 75% (253587949) splicing reads. 606913 splicing junctions. 229155 known splicing junctions. 377758 novel splicing junctions.
sampling 80% (270493812) splicing reads. 613620 splicing junctions. 229600 known splicing junctions. 384020 novel splicing junctions.
sampling 85% (287399676) splicing reads. 619497 splicing junctions. 230027 known splicing junctions. 389470 novel splicing junctions.
sampling 90% (304305539) splicing reads. 624448 splicing junctions. 230379 known splicing junctions. 394069 novel splicing junctions.
sampling 95% (321211402) splicing reads. 628549 splicing junctions. 230645 known splicing junctions. 397904 novel splicing junctions.
sampling 100% (338117266) splicing reads. 631721 splicing junctions. 230861 known splicing junctions. 400860 novel splicing junctions.
null device 
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