.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (tih_rna_sample_00105_23H5VFLT4_s21)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/428127fb7a1319f2338c2d1511e4c0/.command.log
Size: 43.6 KB
Task: NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (tih_rna_sample_00105_23H5VFLT4_s21)
Attempt
Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/a3a35375494929a96f234c2fa39af1/tih_rna_sample_00105_23H5VFLT4_s21_2.fastp.fastq.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/428127fb7a1319f2338c2d1511e4c0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/428127fb7a1319f2338c2d1511e4c0/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/708828745aa92ea96e9a7231bb51c7/tih_rna_sample_00105_23H5VFLT4_s21.Chimeric.out.junction
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/a3a35375494929a96f234c2fa39af1/tih_rna_sample_00105_23H5VFLT4_s21_1.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)

-ctat genome lib [/tmp/nxf.sDIpBicufv/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.sDIpBicufv/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.sDIpBicufv/./star-fusion.preliminary
-sample contains 55119781 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.sDIpBicufv/ctat_genome_lib_build_dir  -J /tmp/nxf.sDIpBicufv/tih_rna_sample_00105_23H5VFLT4_s21.Chimeric.out.junction  -O /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.sDIpBicufv/tih_rna_sample_00105_23H5VFLT4_s21.Chimeric.out.junction
-building interval tree based on /tmp/nxf.sDIpBicufv/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

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[990000], rate=65490.63/min -building interval tree based on /tmp/nxf.sDIpBicufv/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.12 min).
-mapping reads to genes

[10000], rate=85714.29/min 
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[990000], rate=64355.36/min -building interval tree based on /tmp/nxf.sDIpBicufv/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.12 min).
-mapping reads to genes

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[990000], rate=61363.64/min -building interval tree based on /tmp/nxf.sDIpBicufv/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.12 min).
-mapping reads to genes

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[990000], rate=58064.52/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.sDIpBicufv/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 4500000.00 reads per min processed...  
 4800000.00 reads per min processed...  
 4285714.29 reads per min processed...  
 4000000.00 reads per min processed...  
 4200000.00 reads per min processed...  
 4000000.00 reads per min processed...  
 4153846.15 reads per min processed...  
 4000000.00 reads per min processed...  
 4125000.00 reads per min processed...  
 4000000.00 reads per min processed...  
 3714285.71 reads per min processed...  
 3818181.82 reads per min processed...  
 3750000.00 reads per min processed...  
 3692307.69 reads per min processed...  
 3777777.78 reads per min processed...  
 3724137.93 reads per min processed...  
 3800000.00 reads per min processed...  
 3870967.74 reads per min processed...  
 3937500.00 reads per min processed...  
 3882352.94 reads per min processed...  
 3942857.14 reads per min processed...  
 4000000.00 reads per min processed...  
 3947368.42 reads per min processed...  
 4000000.00 reads per min processed...  
 4050000.00 reads per min processed...  
 4000000.00 reads per min processed...  
 4046511.63 reads per min processed...  
 4000000.00 reads per min processed...  
 4043478.26 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.sDIpBicufv/tih_rna_sample_00105_23H5VFLT4_s21.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.sDIpBicufv/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -96835.864977
EM: Round [1] log likelihood: -96782.783770
EM: Round [2] log likelihood: -96760.453339
EM: Round [3] log likelihood: -96749.072209
EM: Round [4] log likelihood: -96742.826459
EM: Round [5] log likelihood: -96739.265714
EM: Round [6] log likelihood: -96737.164944
EM: Round [7] log likelihood: -96735.879219
EM: Round [8] log likelihood: -96735.062223
EM: Round [9] log likelihood: -96734.524062
EM: Round [10] log likelihood: -96734.157719
EM: Round [11] log likelihood: -96733.900938
EM: Round [12] log likelihood: -96733.716278
EM: Round [13] log likelihood: -96733.580464
EM: Round [14] log likelihood: -96733.478575
EM: Round [15] log likelihood: -96733.400769
EM: Round [16] log likelihood: -96733.340389
EM: Round [17] log likelihood: -96733.292834
EM: Round [18] log likelihood: -96733.254861
EM: Round [19] log likelihood: -96733.224146
EM: Round [20] log likelihood: -96733.199001
EM: Round [21] log likelihood: -96733.178182
EM: Round [22] log likelihood: -96733.160764
EM: Round [23] log likelihood: -96733.146048
EM: Round [24] log likelihood: -96733.133504
EM: Round [25] log likelihood: -96733.122723
EM: Round [26] log likelihood: -96733.113390
EM: Round [27] log likelihood: -96733.105255
EM: Round [28] log likelihood: -96733.098124
EM: Round [29] log likelihood: -96733.091838
EM: Round [30] log likelihood: -96733.086272
EM: Round [31] log likelihood: -96733.081324
EM: Round [32] log likelihood: -96733.076909
EM: Round [33] log likelihood: -96733.072957
EM: Round [34] log likelihood: -96733.069409
EM: Round [35] log likelihood: -96733.066218
EM: Round [36] log likelihood: -96733.063341
EM: Round [37] log likelihood: -96733.060742
EM: Round [38] log likelihood: -96733.058391
EM: Round [39] log likelihood: -96733.056262
EM: Round [40] log likelihood: -96733.054331
EM: Round [41] log likelihood: -96733.052577
EM: Round [42] log likelihood: -96733.050984
EM: Round [43] log likelihood: -96733.049535
EM: Round [44] log likelihood: -96733.048216
EM: Round [45] log likelihood: -96733.047015
EM: Round [46] log likelihood: -96733.045921
EM: Round [47] log likelihood: -96733.044924
EM: Round [48] log likelihood: -96733.044014
EM: Round [49] log likelihood: -96733.043183
EM: Round [50] log likelihood: -96733.042426
EM: Round [51] log likelihood: -96733.041733
EM: Round [52] log likelihood: -96733.041101
EM: Round [53] log likelihood: -96733.040523
EM: Round [54] log likelihood: -96733.039995
EM: Round [55] log likelihood: -96733.039513
EM: Round [56] log likelihood: -96733.039071
EM: Round [57] log likelihood: -96733.038667
EM: Round [58] log likelihood: -96733.038297
EM: Round [59] log likelihood: -96733.037959
EM: Round [60] log likelihood: -96733.037649
EM: Round [61] log likelihood: -96733.037365
EM: Round [62] log likelihood: -96733.037105
EM: Round [63] log likelihood: -96733.036867
EM: Round [64] log likelihood: -96733.036649
EM: Round [65] log likelihood: -96733.036449
EM: Round [66] log likelihood: -96733.036265
EM: Round [67] log likelihood: -96733.036097
EM: Round [68] log likelihood: -96733.035943
EM: Round [69] log likelihood: -96733.035801
EM: Round [70] log likelihood: -96733.035671
EM: Round [71] log likelihood: -96733.035551
EM: Round [72] log likelihood: -96733.035441
EM: Round [73] log likelihood: -96733.035340
EM: Round [74] log likelihood: -96733.035248
EM: Stopping iterations at round 74 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -96797.859715
EM: Round [1] log likelihood: -96752.224921
EM: Round [2] log likelihood: -96733.813872
EM: Round [3] log likelihood: -96724.696667
EM: Round [4] log likelihood: -96719.792681
EM: Round [5] log likelihood: -96717.046948
EM: Round [6] log likelihood: -96715.458094
EM: Round [7] log likelihood: -96714.505933
EM: Round [8] log likelihood: -96713.913835
EM: Round [9] log likelihood: -96713.531754
EM: Round [10] log likelihood: -96713.276308
EM: Round [11] log likelihood: -96713.099823
EM: Round [12] log likelihood: -96712.974192
EM: Round [13] log likelihood: -96712.882321
EM: Round [14] log likelihood: -96712.813491
EM: Round [15] log likelihood: -96712.760785
EM: Round [16] log likelihood: -96712.719620
EM: Round [17] log likelihood: -96712.686887
EM: Round [18] log likelihood: -96712.660431
EM: Round [19] log likelihood: -96712.638731
EM: Round [20] log likelihood: -96712.620693
EM: Round [21] log likelihood: -96712.605518
EM: Round [22] log likelihood: -96712.592614
EM: Round [23] log likelihood: -96712.581538
EM: Round [24] log likelihood: -96712.571950
EM: Round [25] log likelihood: -96712.563589
EM: Round [26] log likelihood: -96712.556252
EM: Round [27] log likelihood: -96712.549778
EM: Round [28] log likelihood: -96712.544038
EM: Round [29] log likelihood: -96712.538928
EM: Round [30] log likelihood: -96712.534362
EM: Round [31] log likelihood: -96712.530270
EM: Round [32] log likelihood: -96712.526593
EM: Round [33] log likelihood: -96712.523281
EM: Round [34] log likelihood: -96712.520293
EM: Round [35] log likelihood: -96712.517593
EM: Round [36] log likelihood: -96712.515148
EM: Round [37] log likelihood: -96712.512933
EM: Round [38] log likelihood: -96712.510923
EM: Round [39] log likelihood: -96712.509098
EM: Round [40] log likelihood: -96712.507439
EM: Round [41] log likelihood: -96712.505931
EM: Round [42] log likelihood: -96712.504558
EM: Round [43] log likelihood: -96712.503308
EM: Round [44] log likelihood: -96712.502170
EM: Round [45] log likelihood: -96712.501132
EM: Round [46] log likelihood: -96712.500186
EM: Round [47] log likelihood: -96712.499324
EM: Round [48] log likelihood: -96712.498537
EM: Round [49] log likelihood: -96712.497819
EM: Round [50] log likelihood: -96712.497163
EM: Round [51] log likelihood: -96712.496565
EM: Round [52] log likelihood: -96712.496018
EM: Round [53] log likelihood: -96712.495519
EM: Round [54] log likelihood: -96712.495063
EM: Round [55] log likelihood: -96712.494647
EM: Round [56] log likelihood: -96712.494266
EM: Round [57] log likelihood: -96712.493919
EM: Round [58] log likelihood: -96712.493601
EM: Round [59] log likelihood: -96712.493310
EM: Round [60] log likelihood: -96712.493045
EM: Round [61] log likelihood: -96712.492802
EM: Round [62] log likelihood: -96712.492580
EM: Round [63] log likelihood: -96712.492376
EM: Round [64] log likelihood: -96712.492191
EM: Round [65] log likelihood: -96712.492021
EM: Round [66] log likelihood: -96712.491865
EM: Round [67] log likelihood: -96712.491723
EM: Round [68] log likelihood: -96712.491593
EM: Round [69] log likelihood: -96712.491474
EM: Round [70] log likelihood: -96712.491365
EM: Round [71] log likelihood: -96712.491265
EM: Stopping iterations at round 71 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.sDIpBicufv/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.sDIpBicufv/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.sDIpBicufv/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 55119781 > /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.sDIpBicufv/ctat_genome_lib_build_dir > /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.sDIpBicufv/ctat_genome_lib_build_dir --annotate /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.sDIpBicufv/ctat_genome_lib_build_dir
-done, see /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.sDIpBicufv/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 732, filtered: 7089)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.sDIpBicufv/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.sDIpBicufv/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [ENSG00000237296.9]
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WARNING, no entry stored in dbm for [ENSG00000230239.1]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000268120.1]
WARNING, no entry stored in dbm for [ENSG00000283907.1]
WARNING, no entry stored in dbm for [ENSG00000275897.1]
WARNING, no entry stored in dbm for [ENSG00000226609.2]
WARNING, no entry stored in dbm for [ENSG00000240429.1]
WARNING, no entry stored in dbm for [ENSG00000222041.11]
WARNING, no entry stored in dbm for [ENSG00000237206.1]
WARNING, no entry stored in dbm for [ENSG00000282164.3]
WARNING, no entry stored in dbm for [ENSG00000231171.4]
WARNING, no entry stored in dbm for [ENSG00000279249.3]
WARNING, no entry stored in dbm for [ENSG00000261840.3]
WARNING, no entry stored in dbm for [ENSG00000257122.5]
WARNING, no entry stored in dbm for [ENSG00000241170.3]
WARNING, no entry stored in dbm for [ENSG00000276868.1]
WARNING, no entry stored in dbm for [ENSG00000234715.2]
WARNING, no entry stored in dbm for [ENSG00000270641.1]
WARNING, no entry stored in dbm for [ENSG00000230681.1]
WARNING, no entry stored in dbm for [ENSG00000261670.1]
WARNING, no entry stored in dbm for [ENSG00000196796.5]
WARNING, no entry stored in dbm for [ENSG00000236830.7]
WARNING, no entry stored in dbm for [ENSG00000230773.9]
WARNING, no entry stored in dbm for [ENSG00000214548.18]
WARNING, no entry stored in dbm for [ENSG00000254451.2]
WARNING, no entry stored in dbm for [ENSG00000229097.1]
WARNING, no entry stored in dbm for [ENSG00000249252.5]
WARNING, no entry stored in dbm for [ENSG00000267567.1]
WARNING, no entry stored in dbm for [ENSG00000285756.2]
WARNING, no entry stored in dbm for [ENSG00000237480.3]
WARNING, no entry stored in dbm for [ENSG00000285756.2]
WARNING, no entry stored in dbm for [ENSG00000237480.3]
WARNING, no entry stored in dbm for [ENSG00000205534.6]
WARNING, no entry stored in dbm for [ENSG00000261556.10]
WARNING, no entry stored in dbm for [ENSG00000287918.1]
WARNING, no entry stored in dbm for [ENSG00000231607.13]
WARNING, no entry stored in dbm for [ENSG00000203987.3]
WARNING, no entry stored in dbm for [ENSG00000257252.6]
WARNING, no entry stored in dbm for [ENSG00000253408.6]
WARNING, no entry stored in dbm for [ENSG00000235774.2]
WARNING, no entry stored in dbm for [ENSG00000254590.1]
WARNING, no entry stored in dbm for [ENSG00000256448.5]
WARNING, no entry stored in dbm for [ENSG00000241231.2]
WARNING, no entry stored in dbm for [ENSG00000280414.1]
WARNING, no entry stored in dbm for [ENSG00000244306.11]
WARNING, no entry stored in dbm for [ENSG00000230021.10]
WARNING, no entry stored in dbm for [ENSG00000285079.1]
WARNING, no entry stored in dbm for [ENSG00000228818.1]
WARNING, no entry stored in dbm for [ENSG00000279096.2]
WARNING, no entry stored in dbm for [ENSG00000230074.3]
WARNING, no entry stored in dbm for [ENSG00000223546.7]
WARNING, no entry stored in dbm for [ENSG00000287991.1]
WARNING, no entry stored in dbm for [ENSG00000258458.8]
WARNING, no entry stored in dbm for [ENSG00000279609.1]
WARNING, no entry stored in dbm for [ENSG00000258504.2]
WARNING, no entry stored in dbm for [ENSG00000287727.1]
WARNING, no entry stored in dbm for [ENSG00000220685.3]
WARNING, no entry stored in dbm for [ENSG00000214812.3]
WARNING, no entry stored in dbm for [ENSG00000279080.1]
WARNING, no entry stored in dbm for [ENSG00000173209.23]
WARNING, no entry stored in dbm for [ENSG00000231304.2]
WARNING, no entry stored in dbm for [ENSG00000230869.1]
WARNING, no entry stored in dbm for [ENSG00000283907.1]
WARNING, no entry stored in dbm for [ENSG00000231713.2]
WARNING, no entry stored in dbm for [ENSG00000248692.5]
WARNING, no entry stored in dbm for [ENSG00000212694.8]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000229848.1]
WARNING, no entry stored in dbm for [ENSG00000215158.9]
WARNING, no entry stored in dbm for [ENSG00000278212.2]
WARNING, no entry stored in dbm for [ENSG00000279283.1]
WARNING, no entry stored in dbm for [ENSG00000284675.1]
WARNING, no entry stored in dbm for [ENSG00000279174.1]
WARNING, no entry stored in dbm for [ENSG00000251314.2]
WARNING, no entry stored in dbm for [ENSG00000260594.1]
WARNING, no entry stored in dbm for [ENSG00000224536.2]
WARNING, no entry stored in dbm for [ENSG00000269292.1]
WARNING, no entry stored in dbm for [ENSG00000279536.1]
WARNING, no entry stored in dbm for [ENSG00000256625.1]
WARNING, no entry stored in dbm for [ENSG00000231304.2]
WARNING, no entry stored in dbm for [ENSG00000276538.1]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000259299.1]
WARNING, no entry stored in dbm for [ENSG00000229212.8]
WARNING, no entry stored in dbm for [ENSG00000249921.2]
WARNING, no entry stored in dbm for [ENSG00000260693.1]
WARNING, no entry stored in dbm for [ENSG00000239533.6]
WARNING, no entry stored in dbm for [ENSG00000285751.1]
WARNING, no entry stored in dbm for [ENSG00000270815.1]
WARNING, no entry stored in dbm for [ENSG00000264112.1]
WARNING, no entry stored in dbm for [ENSG00000255060.1]
WARNING, no entry stored in dbm for [ENSG00000274220.1]
WARNING, no entry stored in dbm for [ENSG00000268204.1]
WARNING, no entry stored in dbm for [ENSG00000286220.1]
WARNING, no entry stored in dbm for [ENSG00000230305.2]
WARNING, no entry stored in dbm for [ENSG00000239556.4]
WARNING, no entry stored in dbm for [ENSG00000228434.1]
WARNING, no entry stored in dbm for [ENSG00000277283.1]


	* STAR-Fusion complete.  See output: /tmp/nxf.sDIpBicufv/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)