Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/1611e612de2a72d4d0b522c005bebb/GM24385_0001_RNA_0001_23H5VFLT4_s08.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/4dafab2f39cb1c0659913e3eee470d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/4dafab2f39cb1c0659913e3eee470d/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 281651478
unpaired = 3913452
MERGED PAIRED END READS = 281651478
MATES PROCESSED = 567216408
TOTAL READS     = 285564930
DISTINCT READS  = 1.00472e+08
DISTINCT COUNTS = 1094
MAX COUNT       = 559309
COUNTS OF 1     = 4.35165e+07
MAX TERMS       = 100
OBSERVED COUNTS (559310)
1	43516461
2	20951944
3	12160859
4	7676709
5	4999551
6	3303122
7	2212092
8	1498743
9	1034153
10	725723
11	518906
12	378808
13	281666
14	212997
15	163931
16	128257
17	101634
18	81352
19	65811
20	54096
21	44557
22	37634
23	32020
24	27339
25	23274
26	20301
27	17660
28	15498
29	13598
30	12225
31	10860
32	9672
33	8591
34	7919
35	7185
36	6440
37	5865
38	5339
39	4874
40	4613
41	4179
42	3912
43	3550
44	3283
45	3132
46	2923
47	2750
48	2526
49	2413
50	2201
51	2110
52	1991
53	1878
54	1699
55	1643
56	1631
57	1481
58	1368
59	1376
60	1279
61	1171
62	1139
63	1072
64	1035
65	972
66	937
67	856
68	903
69	843
70	830
71	809
72	736
73	736
74	738
75	663
76	655
77	659
78	633
79	593
80	538
81	540
82	535
83	443
84	463
85	448
86	466
87	463
88	437
89	405
90	428
91	391
92	379
93	354
94	355
95	352
96	372
97	328
98	253
99	306
100	307
101	269
102	266
103	266
104	266
105	235
106	263
107	253
108	239
109	224
110	234
111	245
112	247
113	238
114	227
115	209
116	213
117	185
118	194
119	175
120	187
121	164
122	184
123	163
124	179
125	155
126	146
127	173
128	165
129	153
130	169
131	138
132	135
133	142
134	153
135	127
136	119
137	138
138	121
139	128
140	113
141	121
142	123
143	116
144	121
145	113
146	106
147	96
148	105
149	100
150	121
151	104
152	91
153	83
154	96
155	94
156	85
157	85
158	92
159	81
160	94
161	79
162	83
163	70
164	75
165	80
166	105
167	77
168	82
169	84
170	79
171	58
172	52
173	85
174	68
175	67
176	79
177	68
178	81
179	71
180	62
181	58
182	73
183	52
184	66
185	61
186	73
187	55
188	61
189	59
190	51
191	44
192	51
193	55
194	64
195	52
196	61
197	58
198	53
199	49
200	54
201	39
202	45
203	44
204	39
205	54
206	45
207	54
208	35
209	44
210	46
211	40
212	46
213	39
214	47
215	43
216	32
217	44
218	44
219	39
220	38
221	32
222	39
223	30
224	36
225	44
226	33
227	25
228	27
229	33
230	31
231	39
232	32
233	23
234	32
235	40
236	34
237	31
238	20
239	37
240	34
241	22
242	37
243	24
244	33
245	25
246	31
247	45
248	28
249	34
250	30
251	25
252	34
253	35
254	31
255	30
256	39
257	31
258	24
259	27
260	33
261	31
262	25
263	29
264	33
265	22
266	16
267	19
268	22
269	18
270	26
271	24
272	19
273	20
274	21
275	29
276	17
277	25
278	20
279	19
280	23
281	19
282	19
283	21
284	32
285	14
286	19
287	17
288	18
289	12
290	19
291	22
292	26
293	18
294	20
295	17
296	16
297	25
298	15
299	15
300	14
301	12
302	20
303	20
304	22
305	15
306	15
307	20
308	10
309	17
310	18
311	13
312	22
313	8
314	18
315	15
316	17
317	21
318	15
319	16
320	8
321	15
322	8
323	12
324	19
325	14
326	16
327	14
328	14
329	11
330	19
331	14
332	15
333	11
334	6
335	17
336	6
337	10
338	11
339	15
340	2
341	12
342	16
343	18
344	11
345	10
346	10
347	12
348	16
349	11
350	14
351	9
352	12
353	14
354	7
355	9
356	9
357	12
358	6
359	7
360	7
361	17
362	12
363	14
364	9
365	7
366	8
367	10
368	12
369	9
370	7
371	15
372	8
373	15
374	6
375	7
376	12
377	10
378	6
379	16
380	11
381	8
382	14
383	6
384	5
385	8
386	7
387	9
388	5
389	5
390	12
391	14
392	7
393	8
394	8
395	8
396	6
397	9
398	13
399	11
400	6
401	13
402	3
403	4
404	7
405	7
406	10
407	11
408	7
409	8
410	9
411	6
412	3
413	4
414	3
415	5
416	11
417	3
418	5
419	7
420	7
421	5
422	10
423	13
424	8
425	7
426	13
427	4
428	8
429	9
430	6
431	6
432	8
433	5
434	11
435	6
436	7
437	11
438	7
439	6
440	8
441	1
442	7
443	3
444	4
445	5
446	4
447	9
448	6
449	5
450	6
451	8
452	6
453	3
454	3
455	8
456	8
457	3
458	2
459	6
460	8
461	4
462	3
463	9
464	2
465	9
466	6
467	1
468	3
469	1
470	5
471	4
472	6
473	6
474	5
475	3
476	3
477	3
478	4
479	4
480	4
481	1
482	8
483	3
484	3
485	7
486	10
487	3
488	3
489	6
490	4
491	5
492	2
493	6
494	4
495	3
496	12
497	5
498	4
499	5
500	6
501	8
502	4
503	5
504	9
505	4
506	2
507	7
508	5
509	2
510	2
511	2
512	2
513	3
514	4
515	2
516	3
517	2
518	4
519	5
520	6
521	6
522	3
523	2
524	5
525	2
526	4
527	7
528	5
529	3
530	1
531	3
532	8
533	4
534	4
535	1
536	3
537	4
538	3
539	4
540	7
541	2
542	7
543	4
544	5
545	3
546	2
547	1
548	3
550	6
551	4
552	3
553	3
554	1
555	1
556	4
557	3
558	1
559	3
560	5
561	5
563	4
565	2
566	5
567	3
568	5
569	2
570	5
571	4
572	2
573	3
574	2
575	5
576	3
577	2
579	2
580	2
581	5
582	4
583	2
584	1
585	5
586	5
587	1
588	3
589	3
590	2
591	3
592	4
593	4
594	2
595	2
596	1
597	1
598	2
599	2
600	2
601	2
602	1
603	4
604	2
605	3
607	2
608	1
610	1
611	1
613	5
614	2
615	2
616	2
617	3
618	1
619	2
620	2
621	1
622	3
623	4
624	1
625	4
626	5
627	3
628	3
629	1
630	4
631	5
632	3
633	5
634	2
635	3
636	8
638	1
639	1
640	1
642	1
643	5
644	3
645	3
646	5
647	1
648	1
649	6
650	5
651	2
652	3
653	2
654	1
655	4
656	1
657	1
658	5
659	3
660	2
661	2
662	3
664	4
665	4
666	3
667	2
668	2
669	4
670	1
672	1
673	2
674	1
675	3
676	3
677	4
678	1
679	3
680	2
681	3
682	2
683	2
684	1
685	1
686	1
687	2
688	2
689	1
690	2
692	2
693	2
694	1
696	3
697	2
698	1
699	2
700	1
701	1
702	2
703	1
704	1
707	3
708	2
710	2
711	2
712	2
713	3
714	2
715	1
718	1
719	1
720	1
721	2
722	1
723	2
726	2
727	1
728	4
729	1
731	1
732	1
733	2
734	1
735	1
736	1
737	2
738	1
739	1
740	2
741	1
742	1
743	2
744	2
745	1
746	1
748	2
750	2
751	2
752	2
754	1
755	3
756	1
758	1
759	1
762	1
763	2
764	1
765	2
766	4
767	1
769	2
771	1
774	3
775	1
776	2
777	2
778	3
779	3
781	1
782	1
783	2
784	3
786	3
788	1
793	4
794	4
795	1
797	1
798	2
799	3
803	2
804	3
805	1
806	1
807	3
808	1
811	3
812	2
813	2
815	1
816	2
817	1
818	1
819	1
820	2
821	2
822	2
823	1
825	2
826	1
827	2
828	2
830	1
831	2
832	1
833	2
837	1
838	1
839	1
840	1
841	1
842	2
843	2
844	1
845	1
846	2
847	4
848	1
849	2
850	1
851	1
852	1
853	2
854	2
856	1
857	3
858	2
859	1
861	1
862	2
864	2
866	2
867	1
868	2
870	1
874	2
875	1
879	2
881	3
883	4
885	1
886	2
888	1
892	1
894	1
895	1
897	1
898	1
901	1
902	1
906	2
908	2
912	2
913	1
914	1
918	1
919	2
920	1
922	3
923	1
924	3
927	1
928	1
930	2
931	1
932	1
934	1
938	1
939	1
940	2
941	1
943	1
947	1
948	2
950	1
952	1
953	1
954	1
955	1
957	1
958	2
960	1
962	1
966	1
967	2
970	1
971	2
972	1
974	1
975	1
976	1
979	1
983	1
985	1
986	2
987	1
989	2
991	1
992	2
994	1
996	1
998	1
1001	1
1002	2
1003	1
1004	1
1006	1
1008	1
1013	1
1014	1
1015	2
1017	1
1018	1
1019	1
1020	1
1022	1
1023	2
1025	1
1028	2
1029	1
1035	2
1036	2
1037	5
1038	1
1039	1
1041	1
1042	1
1053	1
1054	1
1055	2
1056	1
1057	1
1060	1
1061	1
1062	1
1065	1
1070	1
1073	1
1075	1
1076	1
1077	1
1078	1
1081	1
1085	1
1086	1
1092	1
1102	1
1105	2
1107	1
1110	2
1111	1
1117	1
1120	1
1121	1
1122	1
1125	2
1133	2
1134	1
1135	2
1138	2
1143	1
1151	1
1155	2
1166	1
1167	3
1168	1
1169	1
1173	1
1176	1
1177	1
1179	2
1181	1
1182	2
1186	1
1192	1
1193	1
1194	1
1198	1
1201	1
1206	1
1207	1
1223	1
1228	1
1237	1
1249	1
1254	1
1257	1
1259	1
1264	1
1268	1
1276	1
1277	1
1279	1
1284	1
1285	2
1287	1
1288	1
1294	1
1302	1
1308	1
1309	1
1311	1
1313	1
1318	1
1320	2
1321	1
1322	1
1326	1
1328	1
1333	1
1336	1
1353	1
1356	1
1357	1
1359	1
1367	1
1369	1
1378	1
1379	1
1380	1
1381	1
1386	1
1398	1
1400	1
1404	1
1406	1
1412	1
1414	1
1425	1
1426	1
1432	1
1446	1
1447	1
1473	1
1486	2
1495	1
1502	1
1503	1
1525	2
1550	1
1568	1
1577	1
1587	1
1602	1
1605	1
1608	1
1610	1
1614	1
1617	1
1621	2
1628	1
1632	1
1638	1
1647	1
1675	1
1693	1
1695	1
1707	2
1718	1
1734	1
1736	1
1740	1
1742	1
1752	1
1773	1
1775	1
1788	1
1802	1
1837	1
1882	1
1891	1
1906	1
1936	1
2020	1
2026	1
2027	1
2052	1
2057	1
2071	1
2091	1
2103	1
2106	1
2112	1
2151	1
2157	1
2228	1
2231	1
2234	1
2240	1
2299	1
2324	1
2329	1
2357	1
2470	1
2552	1
2553	1
2622	1
2730	1
2830	1
2912	1
3140	1
3262	1
3408	1
3469	1
3501	1
3660	1
3779	1
4255	1
4833	1
6227	1
8869	1
11741	1
24516	1
559309	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.................__......__.._._........._.._...._..........._._........
...._.__........._....._....._...............
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]