Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/1611e612de2a72d4d0b522c005bebb/GM24385_0001_RNA_0001_23H5VFLT4_s08.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/4dafab2f39cb1c0659913e3eee470d/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/4dafab2f39cb1c0659913e3eee470d/.command.run ==> STAGING COMPLETE (3 inputs) PAIRED_END_BAM_INPUT Processed 1000000 records Processed 2000000 records Processed 3000000 records Processed 4000000 records Processed 5000000 records Processed 6000000 records Processed 7000000 records Processed 8000000 records Processed 9000000 records Processed 10000000 records Processed 11000000 records Processed 12000000 records Processed 13000000 records Processed 14000000 records Processed 15000000 records Processed 16000000 records Processed 17000000 records Processed 18000000 records Processed 19000000 records Processed 20000000 records Processed 21000000 records 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Processed 59000000 records Processed 60000000 records Processed 61000000 records Processed 62000000 records Processed 63000000 records Processed 64000000 records Processed 65000000 records Processed 66000000 records Processed 67000000 records Processed 68000000 records Processed 69000000 records Processed 70000000 records Processed 71000000 records Processed 72000000 records Processed 73000000 records Processed 74000000 records Processed 75000000 records Processed 76000000 records Processed 77000000 records Processed 78000000 records Processed 79000000 records Processed 80000000 records Processed 81000000 records Processed 82000000 records Processed 83000000 records Processed 84000000 records Processed 85000000 records Processed 86000000 records Processed 87000000 records Processed 88000000 records Processed 89000000 records Processed 90000000 records Processed 91000000 records Processed 92000000 records Processed 93000000 records Processed 94000000 records Processed 95000000 records Processed 96000000 records Processed 97000000 records Processed 98000000 records Processed 99000000 records Processed 100000000 records Processed 101000000 records Processed 102000000 records Processed 103000000 records Processed 104000000 records Processed 105000000 records Processed 106000000 records Processed 107000000 records Processed 108000000 records Processed 109000000 records Processed 110000000 records Processed 111000000 records Processed 112000000 records Processed 113000000 records Processed 114000000 records Processed 115000000 records Processed 116000000 records Processed 117000000 records Processed 118000000 records Processed 119000000 records Processed 120000000 records Processed 121000000 records Processed 122000000 records Processed 123000000 records Processed 124000000 records Processed 125000000 records Processed 126000000 records Processed 127000000 records Processed 128000000 records Processed 129000000 records Processed 130000000 records Processed 131000000 records Processed 132000000 records Processed 133000000 records Processed 134000000 records Processed 135000000 records Processed 136000000 records Processed 137000000 records Processed 138000000 records Processed 139000000 records Processed 140000000 records Processed 141000000 records Processed 142000000 records Processed 143000000 records Processed 144000000 records Processed 145000000 records Processed 146000000 records Processed 147000000 records Processed 148000000 records Processed 149000000 records Processed 150000000 records Processed 151000000 records Processed 152000000 records Processed 153000000 records Processed 154000000 records Processed 155000000 records Processed 156000000 records Processed 157000000 records Processed 158000000 records Processed 159000000 records Processed 160000000 records Processed 161000000 records Processed 162000000 records Processed 163000000 records Processed 164000000 records Processed 165000000 records Processed 166000000 records Processed 167000000 records Processed 168000000 records Processed 169000000 records Processed 170000000 records Processed 171000000 records Processed 172000000 records Processed 173000000 records Processed 174000000 records Processed 175000000 records Processed 176000000 records Processed 177000000 records Processed 178000000 records Processed 179000000 records Processed 180000000 records Processed 181000000 records Processed 182000000 records Processed 183000000 records Processed 184000000 records Processed 185000000 records Processed 186000000 records Processed 187000000 records Processed 188000000 records Processed 189000000 records Processed 190000000 records Processed 191000000 records Processed 192000000 records Processed 193000000 records Processed 194000000 records Processed 195000000 records Processed 196000000 records Processed 197000000 records Processed 198000000 records Processed 199000000 records Processed 200000000 records Processed 201000000 records Processed 202000000 records Processed 203000000 records Processed 204000000 records Processed 205000000 records Processed 206000000 records Processed 207000000 records Processed 208000000 records Processed 209000000 records Processed 210000000 records Processed 211000000 records Processed 212000000 records Processed 213000000 records Processed 214000000 records Processed 215000000 records Processed 216000000 records Processed 217000000 records Processed 218000000 records Processed 219000000 records Processed 220000000 records Processed 221000000 records Processed 222000000 records Processed 223000000 records Processed 224000000 records Processed 225000000 records Processed 226000000 records Processed 227000000 records Processed 228000000 records Processed 229000000 records Processed 230000000 records Processed 231000000 records Processed 232000000 records Processed 233000000 records Processed 234000000 records Processed 235000000 records Processed 236000000 records Processed 237000000 records Processed 238000000 records Processed 239000000 records Processed 240000000 records Processed 241000000 records Processed 242000000 records Processed 243000000 records Processed 244000000 records Processed 245000000 records Processed 246000000 records Processed 247000000 records Processed 248000000 records Processed 249000000 records Processed 250000000 records Processed 251000000 records Processed 252000000 records Processed 253000000 records Processed 254000000 records Processed 255000000 records Processed 256000000 records Processed 257000000 records Processed 258000000 records Processed 259000000 records Processed 260000000 records Processed 261000000 records Processed 262000000 records Processed 263000000 records Processed 264000000 records Processed 265000000 records Processed 266000000 records Processed 267000000 records Processed 268000000 records Processed 269000000 records Processed 270000000 records Processed 271000000 records Processed 272000000 records Processed 273000000 records Processed 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Processed 310000000 records Processed 311000000 records Processed 312000000 records Processed 313000000 records Processed 314000000 records Processed 315000000 records Processed 316000000 records Processed 317000000 records Processed 318000000 records Processed 319000000 records Processed 320000000 records Processed 321000000 records Processed 322000000 records Processed 323000000 records Processed 324000000 records Processed 325000000 records Processed 326000000 records Processed 327000000 records Processed 328000000 records Processed 329000000 records Processed 330000000 records Processed 331000000 records Processed 332000000 records Processed 333000000 records Processed 334000000 records Processed 335000000 records Processed 336000000 records Processed 337000000 records Processed 338000000 records Processed 339000000 records Processed 340000000 records Processed 341000000 records Processed 342000000 records Processed 343000000 records Processed 344000000 records Processed 345000000 records Processed 346000000 records Processed 347000000 records Processed 348000000 records Processed 349000000 records Processed 350000000 records Processed 351000000 records Processed 352000000 records Processed 353000000 records Processed 354000000 records Processed 355000000 records Processed 356000000 records Processed 357000000 records Processed 358000000 records Processed 359000000 records Processed 360000000 records Processed 361000000 records Processed 362000000 records Processed 363000000 records Processed 364000000 records Processed 365000000 records Processed 366000000 records Processed 367000000 records Processed 368000000 records Processed 369000000 records Processed 370000000 records Processed 371000000 records Processed 372000000 records Processed 373000000 records Processed 374000000 records Processed 375000000 records Processed 376000000 records Processed 377000000 records Processed 378000000 records Processed 379000000 records Processed 380000000 records Processed 381000000 records Processed 382000000 records Processed 383000000 records Processed 384000000 records Processed 385000000 records Processed 386000000 records Processed 387000000 records Processed 388000000 records Processed 389000000 records Processed 390000000 records Processed 391000000 records Processed 392000000 records Processed 393000000 records Processed 394000000 records Processed 395000000 records Processed 396000000 records Processed 397000000 records Processed 398000000 records Processed 399000000 records Processed 400000000 records Processed 401000000 records Processed 402000000 records Processed 403000000 records Processed 404000000 records Processed 405000000 records Processed 406000000 records Processed 407000000 records Processed 408000000 records Processed 409000000 records Processed 410000000 records Processed 411000000 records Processed 412000000 records Processed 413000000 records Processed 414000000 records Processed 415000000 records Processed 416000000 records Processed 417000000 records Processed 418000000 records Processed 419000000 records Processed 420000000 records Processed 421000000 records Processed 422000000 records Processed 423000000 records Processed 424000000 records Processed 425000000 records Processed 426000000 records Processed 427000000 records Processed 428000000 records Processed 429000000 records Processed 430000000 records Processed 431000000 records Processed 432000000 records Processed 433000000 records Processed 434000000 records Processed 435000000 records Processed 436000000 records Processed 437000000 records Processed 438000000 records Processed 439000000 records Processed 440000000 records Processed 441000000 records Processed 442000000 records Processed 443000000 records Processed 444000000 records Processed 445000000 records Processed 446000000 records Processed 447000000 records Processed 448000000 records Processed 449000000 records Processed 450000000 records Processed 451000000 records Processed 452000000 records Processed 453000000 records Processed 454000000 records Processed 455000000 records Processed 456000000 records Processed 457000000 records Processed 458000000 records Processed 459000000 records Processed 460000000 records Processed 461000000 records Processed 462000000 records Processed 463000000 records Processed 464000000 records Processed 465000000 records Processed 466000000 records Processed 467000000 records Processed 468000000 records Processed 469000000 records Processed 470000000 records Processed 471000000 records Processed 472000000 records Processed 473000000 records Processed 474000000 records Processed 475000000 records Processed 476000000 records Processed 477000000 records Processed 478000000 records Processed 479000000 records Processed 480000000 records Processed 481000000 records Processed 482000000 records Processed 483000000 records Processed 484000000 records Processed 485000000 records Processed 486000000 records Processed 487000000 records Processed 488000000 records Processed 489000000 records Processed 490000000 records Processed 491000000 records Processed 492000000 records Processed 493000000 records Processed 494000000 records Processed 495000000 records Processed 496000000 records Processed 497000000 records Processed 498000000 records Processed 499000000 records Processed 500000000 records Processed 501000000 records Processed 502000000 records Processed 503000000 records Processed 504000000 records Processed 505000000 records Processed 506000000 records Processed 507000000 records Processed 508000000 records Processed 509000000 records Processed 510000000 records Processed 511000000 records Processed 512000000 records Processed 513000000 records Processed 514000000 records Processed 515000000 records Processed 516000000 records Processed 517000000 records Processed 518000000 records Processed 519000000 records Processed 520000000 records Processed 521000000 records Processed 522000000 records Processed 523000000 records Processed 524000000 records Processed 525000000 records Processed 526000000 records Processed 527000000 records Processed 528000000 records Processed 529000000 records Processed 530000000 records Processed 531000000 records Processed 532000000 records Processed 533000000 records Processed 534000000 records Processed 535000000 records Processed 536000000 records Processed 537000000 records Processed 538000000 records Processed 539000000 records Processed 540000000 records Processed 541000000 records Processed 542000000 records Processed 543000000 records Processed 544000000 records Processed 545000000 records Processed 546000000 records Processed 547000000 records Processed 548000000 records Processed 549000000 records Processed 550000000 records Processed 551000000 records Processed 552000000 records Processed 553000000 records Processed 554000000 records Processed 555000000 records Processed 556000000 records Processed 557000000 records Processed 558000000 records Processed 559000000 records Processed 560000000 records Processed 561000000 records Processed 562000000 records Processed 563000000 records Processed 564000000 records Processed 565000000 records Processed 566000000 records Processed 567000000 records paired = 281651478 unpaired = 3913452 MERGED PAIRED END READS = 281651478 MATES PROCESSED = 567216408 TOTAL READS = 285564930 DISTINCT READS = 1.00472e+08 DISTINCT COUNTS = 1094 MAX COUNT = 559309 COUNTS OF 1 = 4.35165e+07 MAX TERMS = 100 OBSERVED COUNTS (559310) 1 43516461 2 20951944 3 12160859 4 7676709 5 4999551 6 3303122 7 2212092 8 1498743 9 1034153 10 725723 11 518906 12 378808 13 281666 14 212997 15 163931 16 128257 17 101634 18 81352 19 65811 20 54096 21 44557 22 37634 23 32020 24 27339 25 23274 26 20301 27 17660 28 15498 29 13598 30 12225 31 10860 32 9672 33 8591 34 7919 35 7185 36 6440 37 5865 38 5339 39 4874 40 4613 41 4179 42 3912 43 3550 44 3283 45 3132 46 2923 47 2750 48 2526 49 2413 50 2201 51 2110 52 1991 53 1878 54 1699 55 1643 56 1631 57 1481 58 1368 59 1376 60 1279 61 1171 62 1139 63 1072 64 1035 65 972 66 937 67 856 68 903 69 843 70 830 71 809 72 736 73 736 74 738 75 663 76 655 77 659 78 633 79 593 80 538 81 540 82 535 83 443 84 463 85 448 86 466 87 463 88 437 89 405 90 428 91 391 92 379 93 354 94 355 95 352 96 372 97 328 98 253 99 306 100 307 101 269 102 266 103 266 104 266 105 235 106 263 107 253 108 239 109 224 110 234 111 245 112 247 113 238 114 227 115 209 116 213 117 185 118 194 119 175 120 187 121 164 122 184 123 163 124 179 125 155 126 146 127 173 128 165 129 153 130 169 131 138 132 135 133 142 134 153 135 127 136 119 137 138 138 121 139 128 140 113 141 121 142 123 143 116 144 121 145 113 146 106 147 96 148 105 149 100 150 121 151 104 152 91 153 83 154 96 155 94 156 85 157 85 158 92 159 81 160 94 161 79 162 83 163 70 164 75 165 80 166 105 167 77 168 82 169 84 170 79 171 58 172 52 173 85 174 68 175 67 176 79 177 68 178 81 179 71 180 62 181 58 182 73 183 52 184 66 185 61 186 73 187 55 188 61 189 59 190 51 191 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4 495 3 496 12 497 5 498 4 499 5 500 6 501 8 502 4 503 5 504 9 505 4 506 2 507 7 508 5 509 2 510 2 511 2 512 2 513 3 514 4 515 2 516 3 517 2 518 4 519 5 520 6 521 6 522 3 523 2 524 5 525 2 526 4 527 7 528 5 529 3 530 1 531 3 532 8 533 4 534 4 535 1 536 3 537 4 538 3 539 4 540 7 541 2 542 7 543 4 544 5 545 3 546 2 547 1 548 3 550 6 551 4 552 3 553 3 554 1 555 1 556 4 557 3 558 1 559 3 560 5 561 5 563 4 565 2 566 5 567 3 568 5 569 2 570 5 571 4 572 2 573 3 574 2 575 5 576 3 577 2 579 2 580 2 581 5 582 4 583 2 584 1 585 5 586 5 587 1 588 3 589 3 590 2 591 3 592 4 593 4 594 2 595 2 596 1 597 1 598 2 599 2 600 2 601 2 602 1 603 4 604 2 605 3 607 2 608 1 610 1 611 1 613 5 614 2 615 2 616 2 617 3 618 1 619 2 620 2 621 1 622 3 623 4 624 1 625 4 626 5 627 3 628 3 629 1 630 4 631 5 632 3 633 5 634 2 635 3 636 8 638 1 639 1 640 1 642 1 643 5 644 3 645 3 646 5 647 1 648 1 649 6 650 5 651 2 652 3 653 2 654 1 655 4 656 1 657 1 658 5 659 3 660 2 661 2 662 3 664 4 665 4 666 3 667 2 668 2 669 4 670 1 672 1 673 2 674 1 675 3 676 3 677 4 678 1 679 3 680 2 681 3 682 2 683 2 684 1 685 1 686 1 687 2 688 2 689 1 690 2 692 2 693 2 694 1 696 3 697 2 698 1 699 2 700 1 701 1 702 2 703 1 704 1 707 3 708 2 710 2 711 2 712 2 713 3 714 2 715 1 718 1 719 1 720 1 721 2 722 1 723 2 726 2 727 1 728 4 729 1 731 1 732 1 733 2 734 1 735 1 736 1 737 2 738 1 739 1 740 2 741 1 742 1 743 2 744 2 745 1 746 1 748 2 750 2 751 2 752 2 754 1 755 3 756 1 758 1 759 1 762 1 763 2 764 1 765 2 766 4 767 1 769 2 771 1 774 3 775 1 776 2 777 2 778 3 779 3 781 1 782 1 783 2 784 3 786 3 788 1 793 4 794 4 795 1 797 1 798 2 799 3 803 2 804 3 805 1 806 1 807 3 808 1 811 3 812 2 813 2 815 1 816 2 817 1 818 1 819 1 820 2 821 2 822 2 823 1 825 2 826 1 827 2 828 2 830 1 831 2 832 1 833 2 837 1 838 1 839 1 840 1 841 1 842 2 843 2 844 1 845 1 846 2 847 4 848 1 849 2 850 1 851 1 852 1 853 2 854 2 856 1 857 3 858 2 859 1 861 1 862 2 864 2 866 2 867 1 868 2 870 1 874 2 875 1 879 2 881 3 883 4 885 1 886 2 888 1 892 1 894 1 895 1 897 1 898 1 901 1 902 1 906 2 908 2 912 2 913 1 914 1 918 1 919 2 920 1 922 3 923 1 924 3 927 1 928 1 930 2 931 1 932 1 934 1 938 1 939 1 940 2 941 1 943 1 947 1 948 2 950 1 952 1 953 1 954 1 955 1 957 1 958 2 960 1 962 1 966 1 967 2 970 1 971 2 972 1 974 1 975 1 976 1 979 1 983 1 985 1 986 2 987 1 989 2 991 1 992 2 994 1 996 1 998 1 1001 1 1002 2 1003 1 1004 1 1006 1 1008 1 1013 1 1014 1 1015 2 1017 1 1018 1 1019 1 1020 1 1022 1 1023 2 1025 1 1028 2 1029 1 1035 2 1036 2 1037 5 1038 1 1039 1 1041 1 1042 1 1053 1 1054 1 1055 2 1056 1 1057 1 1060 1 1061 1 1062 1 1065 1 1070 1 1073 1 1075 1 1076 1 1077 1 1078 1 1081 1 1085 1 1086 1 1092 1 1102 1 1105 2 1107 1 1110 2 1111 1 1117 1 1120 1 1121 1 1122 1 1125 2 1133 2 1134 1 1135 2 1138 2 1143 1 1151 1 1155 2 1166 1 1167 3 1168 1 1169 1 1173 1 1176 1 1177 1 1179 2 1181 1 1182 2 1186 1 1192 1 1193 1 1194 1 1198 1 1201 1 1206 1 1207 1 1223 1 1228 1 1237 1 1249 1 1254 1 1257 1 1259 1 1264 1 1268 1 1276 1 1277 1 1279 1 1284 1 1285 2 1287 1 1288 1 1294 1 1302 1 1308 1 1309 1 1311 1 1313 1 1318 1 1320 2 1321 1 1322 1 1326 1 1328 1 1333 1 1336 1 1353 1 1356 1 1357 1 1359 1 1367 1 1369 1 1378 1 1379 1 1380 1 1381 1 1386 1 1398 1 1400 1 1404 1 1406 1 1412 1 1414 1 1425 1 1426 1 1432 1 1446 1 1447 1 1473 1 1486 2 1495 1 1502 1 1503 1 1525 2 1550 1 1568 1 1577 1 1587 1 1602 1 1605 1 1608 1 1610 1 1614 1 1617 1 1621 2 1628 1 1632 1 1638 1 1647 1 1675 1 1693 1 1695 1 1707 2 1718 1 1734 1 1736 1 1740 1 1742 1 1752 1 1773 1 1775 1 1788 1 1802 1 1837 1 1882 1 1891 1 1906 1 1936 1 2020 1 2026 1 2027 1 2052 1 2057 1 2071 1 2091 1 2103 1 2106 1 2112 1 2151 1 2157 1 2228 1 2231 1 2234 1 2240 1 2299 1 2324 1 2329 1 2357 1 2470 1 2552 1 2553 1 2622 1 2730 1 2830 1 2912 1 3140 1 3262 1 3408 1 3469 1 3501 1 3660 1 3779 1 4255 1 4833 1 6227 1 8869 1 11741 1 24516 1 559309 1 [ESTIMATING YIELD CURVE] [BOOTSTRAPPING HISTOGRAM] .................__......__.._._........._.._...._..........._._........ ...._.__........._....._....._............... [COMPUTING CONFIDENCE INTERVALS] [WRITING OUTPUT]