Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/7cd2061c1c16e215b06cb192370845/tih_rna_sample_00115_23H5VFLT4_s35.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/3826d7abdb66a3ca1477cfcd31a534/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/3826d7abdb66a3ca1477cfcd31a534/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 246219652
unpaired = 3607323
MERGED PAIRED END READS = 246219652
MATES PROCESSED = 496046627
TOTAL READS     = 249826975
DISTINCT READS  = 7.20512e+07
DISTINCT COUNTS = 1625
MAX COUNT       = 295222
COUNTS OF 1     = 2.9988e+07
MAX TERMS       = 100
OBSERVED COUNTS (295223)
1	29988037
2	13063512
3	7969406
4	5566576
5	4009838
6	2888086
7	2083808
8	1503348
9	1092531
10	799938
11	593008
12	447265
13	341027
14	263764
15	207387
16	166744
17	133918
18	109437
19	90691
20	76174
21	63884
22	54692
23	46437
24	40043
25	34765
26	30183
27	26806
28	23337
29	20778
30	18538
31	16928
32	15177
33	13635
34	12305
35	11260
36	10319
37	9680
38	8747
39	8068
40	7429
41	7075
42	6648
43	6146
44	5750
45	5370
46	4920
47	4690
48	4422
49	4252
50	3958
51	3789
52	3707
53	3392
54	3298
55	3091
56	2917
57	2806
58	2629
59	2567
60	2443
61	2425
62	2314
63	2243
64	2092
65	2044
66	1922
67	1848
68	1829
69	1802
70	1685
71	1663
72	1555
73	1597
74	1386
75	1430
76	1378
77	1331
78	1294
79	1345
80	1230
81	1196
82	1070
83	1124
84	1083
85	1079
86	1052
87	929
88	938
89	892
90	925
91	883
92	860
93	870
94	834
95	773
96	759
97	784
98	719
99	763
100	674
101	652
102	684
103	597
104	641
105	603
106	614
107	553
108	570
109	507
110	552
111	546
112	575
113	535
114	522
115	512
116	520
117	506
118	483
119	460
120	487
121	421
122	448
123	423
124	402
125	414
126	433
127	407
128	374
129	364
130	389
131	328
132	363
133	384
134	357
135	333
136	331
137	330
138	311
139	302
140	329
141	317
142	280
143	280
144	289
145	298
146	314
147	301
148	267
149	277
150	268
151	243
152	262
153	244
154	235
155	222
156	230
157	245
158	244
159	229
160	225
161	231
162	203
163	239
164	217
165	216
166	172
167	237
168	192
169	183
170	197
171	173
172	178
173	182
174	190
175	177
176	174
177	159
178	183
179	140
180	166
181	152
182	154
183	167
184	158
185	150
186	160
187	144
188	165
189	142
190	145
191	153
192	142
193	149
194	137
195	146
196	127
197	143
198	145
199	155
200	125
201	150
202	126
203	144
204	131
205	134
206	112
207	126
208	126
209	103
210	118
211	132
212	123
213	126
214	108
215	123
216	119
217	102
218	93
219	93
220	114
221	101
222	97
223	87
224	83
225	109
226	102
227	91
228	91
229	96
230	92
231	112
232	76
233	105
234	91
235	85
236	91
237	77
238	99
239	93
240	80
241	92
242	78
243	79
244	88
245	87
246	73
247	72
248	77
249	66
250	85
251	85
252	73
253	69
254	85
255	77
256	68
257	76
258	75
259	71
260	74
261	66
262	61
263	60
264	79
265	65
266	71
267	68
268	68
269	57
270	60
271	66
272	60
273	58
274	56
275	48
276	54
277	65
278	45
279	83
280	55
281	65
282	53
283	51
284	50
285	58
286	61
287	56
288	46
289	54
290	63
291	56
292	53
293	49
294	54
295	46
296	63
297	54
298	54
299	39
300	65
301	40
302	47
303	37
304	53
305	67
306	49
307	43
308	60
309	55
310	41
311	50
312	44
313	42
314	38
315	37
316	46
317	46
318	37
319	35
320	36
321	32
322	34
323	47
324	39
325	45
326	31
327	40
328	49
329	40
330	55
331	32
332	32
333	34
334	36
335	33
336	43
337	36
338	33
339	32
340	32
341	33
342	28
343	17
344	34
345	40
346	27
347	34
348	31
349	40
350	28
351	33
352	29
353	36
354	27
355	34
356	31
357	15
358	29
359	27
360	36
361	35
362	27
363	28
364	25
365	30
366	34
367	36
368	37
369	34
370	27
371	38
372	31
373	27
374	27
375	33
376	24
377	25
378	20
379	19
380	23
381	22
382	19
383	22
384	26
385	24
386	22
387	32
388	21
389	19
390	28
391	31
392	28
393	21
394	23
395	25
396	25
397	18
398	17
399	17
400	18
401	16
402	28
403	30
404	18
405	18
406	21
407	23
408	13
409	19
410	17
411	16
412	27
413	20
414	29
415	21
416	24
417	23
418	18
419	21
420	23
421	22
422	19
423	18
424	23
425	19
426	10
427	17
428	13
429	18
430	21
431	15
432	23
433	17
434	24
435	26
436	11
437	16
438	20
439	16
440	18
441	9
442	18
443	17
444	16
445	23
446	21
447	21
448	15
449	19
450	12
451	20
452	19
453	20
454	22
455	21
456	18
457	18
458	10
459	16
460	23
461	9
462	14
463	12
464	18
465	17
466	13
467	11
468	19
469	11
470	11
471	22
472	16
473	19
474	14
475	12
476	10
477	11
478	20
479	15
480	14
481	19
482	16
483	10
484	17
485	14
486	16
487	16
488	21
489	10
490	17
491	11
492	12
493	8
494	9
495	13
496	13
497	10
498	21
499	12
500	12
501	10
502	11
503	13
504	10
505	8
506	9
507	9
508	12
509	11
510	5
511	12
512	10
513	13
514	18
515	13
516	10
517	11
518	18
519	9
520	11
521	16
522	10
523	9
524	13
525	16
526	7
527	15
528	7
529	7
530	7
531	16
532	10
533	8
534	9
535	10
536	7
537	4
538	7
539	12
540	12
541	3
542	10
543	7
544	13
545	7
546	12
547	10
548	9
549	8
550	8
551	7
552	14
553	13
554	17
555	6
556	14
557	7
558	6
559	11
560	7
561	15
562	10
563	6
564	11
565	13
566	7
567	10
568	9
569	13
570	6
571	7
572	8
573	7
574	3
575	8
576	7
577	8
578	11
579	4
580	8
581	5
582	6
583	8
584	10
585	10
586	3
587	6
588	7
589	6
590	7
591	11
592	8
593	9
594	8
595	7
596	10
597	10
598	6
599	7
600	8
601	8
602	7
603	5
604	3
605	4
606	3
607	8
608	7
609	7
610	8
611	6
612	9
613	6
614	3
615	12
616	8
617	9
618	10
619	5
620	15
621	4
622	10
623	7
624	10
625	10
626	8
627	7
628	3
629	8
630	8
631	5
632	2
633	9
634	8
635	7
636	4
637	12
638	4
639	4
640	8
641	7
642	6
643	11
644	8
645	4
646	6
647	9
648	4
649	5
650	9
651	5
652	3
653	5
654	8
655	5
656	8
657	5
658	7
659	9
660	1
661	5
662	5
663	8
664	4
665	9
666	4
667	4
668	10
669	9
670	3
671	6
672	8
673	6
674	2
675	6
676	6
677	8
678	4
679	5
680	6
681	6
682	2
683	7
684	6
685	9
686	2
687	7
688	7
689	4
690	6
692	6
693	5
694	5
695	5
696	3
697	5
698	4
699	5
700	4
701	6
702	7
703	6
704	6
705	6
706	2
707	9
708	4
709	4
710	4
711	4
712	3
713	6
714	3
715	7
716	4
717	7
718	5
719	3
720	3
721	7
722	4
723	10
724	7
725	2
726	3
727	2
728	5
729	4
730	4
731	5
732	4
733	5
734	1
735	8
736	6
737	6
738	6
739	10
740	5
741	3
742	6
743	3
744	9
745	4
746	4
747	4
748	4
749	4
750	8
751	1
752	4
753	5
754	6
755	10
756	3
757	2
758	7
759	2
760	3
761	5
762	3
763	1
764	2
765	6
766	1
767	2
768	1
769	9
770	6
771	5
772	5
773	6
774	3
775	3
776	6
777	5
778	4
779	4
780	1
781	5
782	2
783	5
784	2
785	2
786	2
787	6
788	5
789	2
790	3
791	6
792	2
793	3
794	9
795	3
796	4
797	7
798	2
799	4
800	2
801	6
802	3
803	3
804	1
805	3
806	2
807	7
808	2
809	2
810	5
811	3
812	3
813	2
814	4
815	2
816	3
818	1
819	2
820	8
821	2
822	1
823	5
824	5
825	1
826	1
827	1
828	2
829	2
830	5
831	2
832	2
833	2
834	5
835	1
836	1
837	5
838	3
839	2
840	1
841	2
842	4
843	2
844	2
845	2
847	3
848	6
849	2
850	3
851	6
852	4
853	2
854	7
855	3
856	5
858	1
859	1
860	1
861	1
862	3
863	2
864	1
865	3
866	2
867	2
868	3
869	2
871	5
872	3
873	1
874	2
875	1
876	5
877	3
878	5
879	1
880	3
881	3
882	4
884	3
885	2
886	1
887	3
888	1
889	3
891	1
892	2
893	1
894	4
895	3
896	2
897	4
898	2
899	1
900	3
901	2
903	4
904	2
905	2
906	1
907	4
908	5
909	1
911	1
912	2
913	3
914	1
915	3
916	2
917	3
918	2
919	3
920	1
921	4
922	3
923	2
924	2
926	4
927	1
928	4
929	3
930	3
931	1
932	2
933	9
935	2
936	2
937	3
938	2
939	2
940	4
941	1
942	1
943	2
944	2
945	3
946	2
947	3
948	1
949	1
951	1
952	1
953	1
954	2
955	1
956	1
958	2
960	2
961	2
962	4
963	2
964	2
965	7
966	1
967	2
968	1
969	2
970	1
971	4
972	1
973	1
974	3
975	4
976	4
977	2
978	1
979	3
980	1
981	5
982	1
983	3
984	2
985	2
986	3
987	4
988	2
989	3
990	1
991	4
992	1
993	2
994	2
996	1
997	2
999	4
1000	2
1001	2
1002	4
1003	2
1006	1
1007	2
1008	3
1010	2
1011	2
1014	4
1015	2
1016	1
1017	1
1018	3
1019	2
1021	4
1022	3
1023	2
1024	2
1026	3
1027	1
1028	3
1029	3
1030	3
1032	2
1033	1
1035	2
1036	2
1037	1
1038	2
1039	2
1040	3
1041	5
1042	1
1045	3
1046	3
1047	3
1048	3
1049	1
1050	2
1052	4
1053	2
1054	1
1055	1
1056	2
1058	1
1059	1
1060	2
1061	5
1062	1
1063	2
1064	1
1065	2
1066	3
1067	1
1069	2
1070	1
1071	4
1072	3
1073	5
1074	1
1075	3
1076	1
1077	2
1080	3
1081	2
1082	1
1083	1
1084	1
1087	1
1088	2
1090	1
1094	1
1095	3
1096	4
1097	2
1098	3
1100	1
1101	2
1102	3
1105	1
1106	2
1107	4
1108	3
1109	1
1110	1
1113	2
1115	1
1116	1
1117	1
1119	1
1120	1
1121	2
1122	1
1126	1
1127	2
1128	3
1129	1
1130	3
1131	3
1132	1
1135	3
1138	2
1139	1
1142	1
1144	1
1145	1
1147	3
1148	2
1149	2
1151	2
1152	2
1153	2
1154	2
1155	1
1160	1
1161	1
1162	1
1163	1
1164	3
1165	3
1168	1
1170	2
1171	2
1175	1
1178	1
1180	3
1181	2
1182	3
1183	1
1185	3
1186	1
1187	1
1188	2
1189	1
1190	1
1191	1
1192	1
1193	2
1198	1
1199	1
1200	2
1201	1
1202	1
1203	1
1204	2
1205	2
1207	2
1209	2
1210	1
1211	1
1213	2
1214	2
1215	1
1216	1
1217	1
1218	2
1219	2
1220	2
1222	1
1223	2
1224	1
1225	1
1226	1
1227	1
1229	1
1230	1
1231	1
1233	1
1234	5
1235	1
1236	1
1238	1
1239	1
1240	1
1241	3
1244	3
1246	1
1247	4
1249	1
1250	2
1251	1
1253	2
1254	3
1255	1
1258	2
1259	1
1260	2
1261	2
1262	1
1264	1
1265	1
1268	2
1269	1
1270	1
1271	2
1273	2
1276	5
1277	2
1279	2
1283	2
1285	3
1286	1
1288	1
1289	1
1291	1
1293	1
1295	3
1298	1
1299	4
1300	1
1301	1
1303	2
1304	1
1305	3
1306	1
1307	2
1312	1
1313	1
1316	2
1317	2
1318	1
1320	1
1321	1
1322	1
1324	1
1325	2
1326	1
1328	1
1329	2
1330	1
1331	1
1332	1
1333	1
1334	1
1335	2
1336	2
1337	1
1338	1
1339	2
1340	1
1341	1
1342	1
1343	1
1344	2
1345	7
1346	1
1347	2
1353	3
1354	2
1357	1
1359	2
1360	1
1361	2
1362	1
1365	2
1366	4
1368	1
1372	1
1378	1
1380	2
1381	1
1382	1
1384	1
1386	1
1388	1
1390	2
1394	1
1395	1
1400	1
1403	1
1407	1
1408	1
1409	1
1419	1
1420	1
1421	2
1423	1
1424	1
1425	1
1426	1
1430	1
1431	1
1432	1
1433	2
1434	2
1435	1
1437	3
1441	1
1442	1
1445	1
1446	3
1447	1
1454	4
1455	1
1456	2
1458	1
1460	3
1462	2
1463	1
1467	3
1469	2
1474	2
1479	1
1483	1
1484	1
1485	1
1486	1
1487	1
1491	3
1492	2
1493	3
1494	1
1497	1
1500	2
1503	2
1507	1
1508	1
1511	4
1513	2
1517	1
1518	1
1519	2
1521	2
1522	1
1523	1
1524	1
1527	1
1528	1
1531	1
1532	1
1533	1
1536	2
1537	1
1538	2
1540	1
1542	3
1544	1
1545	1
1546	1
1548	1
1549	2
1550	1
1555	1
1560	1
1563	1
1564	2
1565	1
1569	1
1570	1
1572	1
1573	1
1575	1
1576	1
1583	1
1584	1
1585	1
1590	2
1591	1
1592	1
1596	1
1597	1
1599	2
1603	1
1607	1
1609	1
1612	2
1614	1
1616	1
1619	1
1622	2
1623	1
1627	2
1632	1
1633	1
1636	2
1637	1
1638	1
1639	1
1641	1
1642	1
1648	1
1655	1
1656	1
1658	1
1663	2
1665	1
1666	1
1669	1
1672	2
1673	2
1680	3
1688	1
1689	1
1697	3
1700	1
1701	1
1704	1
1709	2
1712	2
1714	1
1715	1
1717	1
1718	1
1725	1
1729	1
1737	1
1745	1
1746	1
1747	1
1750	1
1752	1
1759	2
1766	3
1768	1
1776	1
1777	1
1786	1
1796	1
1800	1
1803	1
1805	1
1811	1
1816	1
1817	1
1818	1
1819	1
1824	1
1830	2
1833	1
1843	1
1853	2
1863	1
1866	1
1868	1
1872	1
1876	1
1879	1
1880	1
1884	1
1889	2
1892	2
1894	1
1901	1
1902	1
1905	1
1911	1
1915	1
1917	1
1919	1
1923	2
1924	1
1929	1
1938	1
1949	1
1952	2
1956	1
1957	1
1961	1
1979	1
1982	1
1985	1
1986	2
2003	1
2005	1
2006	1
2007	1
2010	1
2013	1
2021	1
2023	1
2028	1
2030	1
2031	1
2032	1
2034	1
2037	1
2044	1
2054	1
2061	1
2072	1
2073	1
2091	1
2093	1
2117	1
2121	1
2123	1
2124	1
2129	1
2137	1
2139	1
2149	1
2164	1
2168	1
2169	1
2174	1
2178	1
2181	1
2183	1
2198	1
2201	1
2207	1
2228	1
2236	1
2243	1
2256	1
2260	1
2274	1
2281	1
2284	1
2285	1
2286	1
2292	1
2304	1
2307	1
2310	1
2311	1
2322	2
2330	2
2344	1
2357	1
2382	1
2389	1
2395	1
2396	1
2398	1
2399	1
2413	1
2417	1
2428	1
2431	1
2437	1
2447	1
2472	1
2475	2
2490	1
2496	1
2521	1
2534	1
2544	1
2545	1
2547	2
2548	1
2554	1
2573	1
2593	1
2631	1
2634	1
2638	1
2660	1
2667	1
2669	2
2673	1
2675	1
2686	1
2723	1
2763	1
2767	2
2768	1
2772	1
2791	1
2797	1
2824	1
2830	2
2832	1
2835	1
2876	1
2887	1
2893	1
2948	1
2965	1
2974	1
2978	1
2980	1
2987	1
2991	1
2995	1
3041	1
3057	1
3078	2
3083	1
3084	1
3103	1
3105	1
3109	1
3162	1
3176	1
3193	1
3233	1
3239	1
3249	1
3264	1
3267	1
3268	1
3270	1
3281	1
3317	1
3377	1
3390	1
3473	1
3515	1
3524	1
3526	1
3557	1
3659	1
3663	1
3690	1
3808	1
3814	1
3841	1
3915	1
3942	1
4076	1
4130	1
4146	1
4391	1
4393	1
4408	1
4588	1
4665	1
4698	1
4972	1
5038	1
5084	1
5214	1
5243	1
5388	1
5468	1
5482	1
5760	1
6160	1
6739	1
6759	1
7774	1
8086	1
8554	1
9428	1
10761	1
13203	1
14540	1
14793	1
295222	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.............................................._..._.....................
.._.........._................._.
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]