Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT tih_rna_sample_00115_23H5VFLT4_s35.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00115_23H5VFLT4_s35.md.bam --METRICS_FILE tih_rna_sample_00115_23H5VFLT4_s35.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:06:36.432 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:06:36 GMT 2026] MarkDuplicates --INPUT tih_rna_sample_00115_23H5VFLT4_s35.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00115_23H5VFLT4_s35.md.bam --METRICS_FILE tih_rna_sample_00115_23H5VFLT4_s35.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:06:36 GMT 2026] Executing as ?@nf-22ecb317181e880743ddc815dfa4956f-76de0-lhqtg on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:06:36 MarkDuplicates Start of doWork freeMemory: 105827720; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:06:36 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:06:36 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:06:41 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:1,054,841
INFO 2026-06-08 08:06:41 MarkDuplicates Tracking 1423 as yet unmatched pairs. 655 records in RAM.
INFO 2026-06-08 08:06:44 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 2s. Last read position: chr1:1,564,819
INFO 2026-06-08 08:06:44 MarkDuplicates Tracking 1895 as yet unmatched pairs. 144 records in RAM.
INFO 2026-06-08 08:06:48 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 4s. Last read position: chr1:6,462,061
INFO 2026-06-08 08:06:48 MarkDuplicates Tracking 2677 as yet unmatched pairs. 65 records in RAM.
INFO 2026-06-08 08:06:53 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 4s. Last read position: chr1:10,105,659
INFO 2026-06-08 08:06:53 MarkDuplicates Tracking 3415 as yet unmatched pairs. 89 records in RAM.
INFO 2026-06-08 08:06:56 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 3s. Last read position: chr1:12,276,358
INFO 2026-06-08 08:06:56 MarkDuplicates Tracking 4128 as yet unmatched pairs. 84 records in RAM.
INFO 2026-06-08 08:06:59 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 3s. Last read position: chr1:16,514,145
INFO 2026-06-08 08:06:59 MarkDuplicates Tracking 4630 as yet unmatched pairs. 4 records in RAM.
INFO 2026-06-08 08:07:02 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 3s. Last read position: chr1:19,201,777
INFO 2026-06-08 08:07:02 MarkDuplicates Tracking 5653 as yet unmatched pairs. 361 records in RAM.
INFO 2026-06-08 08:07:05 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:21,834,710
INFO 2026-06-08 08:07:05 MarkDuplicates Tracking 6267 as yet unmatched pairs. 331 records in RAM.
INFO 2026-06-08 08:07:09 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 3s. Last read position: chr1:22,639,399
INFO 2026-06-08 08:07:09 MarkDuplicates Tracking 7017 as yet unmatched pairs. 406 records in RAM.
INFO 2026-06-08 08:07:11 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:25,809,140
INFO 2026-06-08 08:07:11 MarkDuplicates Tracking 7336 as yet unmatched pairs. 64 records in RAM.
INFO 2026-06-08 08:07:14 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 3s. Last read position: chr1:27,551,584
INFO 2026-06-08 08:07:14 MarkDuplicates Tracking 8099 as yet unmatched pairs. 97 records in RAM.
INFO 2026-06-08 08:07:17 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:31,434,118
INFO 2026-06-08 08:07:17 MarkDuplicates Tracking 8963 as yet unmatched pairs. 285 records in RAM.
INFO 2026-06-08 08:07:20 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 2s. Last read position: chr1:32,695,696
INFO 2026-06-08 08:07:20 MarkDuplicates Tracking 9436 as yet unmatched pairs. 45 records in RAM.
INFO 2026-06-08 08:07:22 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 2s. Last read position: chr1:35,841,258
INFO 2026-06-08 08:07:22 MarkDuplicates Tracking 10191 as yet unmatched pairs. 98 records in RAM.
INFO 2026-06-08 08:07:24 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:39,333,083
INFO 2026-06-08 08:07:24 MarkDuplicates Tracking 10959 as yet unmatched pairs. 139 records in RAM.
INFO 2026-06-08 08:07:28 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 3s. Last read position: chr1:41,172,654
INFO 2026-06-08 08:07:28 MarkDuplicates Tracking 11408 as yet unmatched pairs. 11 records in RAM.
INFO 2026-06-08 08:07:30 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 2s. Last read position: chr1:43,674,829
INFO 2026-06-08 08:07:30 MarkDuplicates Tracking 12205 as yet unmatched pairs. 42 records in RAM.
INFO 2026-06-08 08:07:32 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:46,310,268
INFO 2026-06-08 08:07:32 MarkDuplicates Tracking 12819 as yet unmatched pairs. 23 records in RAM.
INFO 2026-06-08 08:07:34 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 2s. Last read position: chr1:54,251,824
INFO 2026-06-08 08:07:34 MarkDuplicates Tracking 13534 as yet unmatched pairs. 66 records in RAM.
INFO 2026-06-08 08:07:36 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:65,854,766
INFO 2026-06-08 08:07:36 MarkDuplicates Tracking 14226 as yet unmatched pairs. 16 records in RAM.
INFO 2026-06-08 08:07:38 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 2s. Last read position: chr1:84,485,238
INFO 2026-06-08 08:07:38 MarkDuplicates Tracking 14705 as yet unmatched pairs. 17 records in RAM.
INFO 2026-06-08 08:07:40 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:93,589,176
INFO 2026-06-08 08:07:40 MarkDuplicates Tracking 15383 as yet unmatched pairs. 122 records in RAM.
INFO 2026-06-08 08:07:42 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:102,962,236
INFO 2026-06-08 08:07:42 MarkDuplicates Tracking 16409 as yet unmatched pairs. 483 records in RAM.
INFO 2026-06-08 08:07:44 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 2s. Last read position: chr1:109,270,058
INFO 2026-06-08 08:07:44 MarkDuplicates Tracking 16608 as yet unmatched pairs. 48 records in RAM.
INFO 2026-06-08 08:07:47 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 2s. Last read position: chr1:112,702,669
INFO 2026-06-08 08:07:47 MarkDuplicates Tracking 17437 as yet unmatched pairs. 239 records in RAM.
INFO 2026-06-08 08:07:49 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 2s. Last read position: chr1:116,910,202
INFO 2026-06-08 08:07:49 MarkDuplicates Tracking 18157 as yet unmatched pairs. 242 records in RAM.
INFO 2026-06-08 08:07:52 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 2s. Last read position: chr1:119,929,127
INFO 2026-06-08 08:07:52 MarkDuplicates Tracking 18800 as yet unmatched pairs. 273 records in RAM.
INFO 2026-06-08 08:07:54 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:120,793,236
INFO 2026-06-08 08:07:54 MarkDuplicates Tracking 19095 as yet unmatched pairs. 124 records in RAM.
INFO 2026-06-08 08:07:55 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:145,850,484
INFO 2026-06-08 08:07:55 MarkDuplicates Tracking 19342 as yet unmatched pairs. 102 records in RAM.
INFO 2026-06-08 08:07:57 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:147,166,581
INFO 2026-06-08 08:07:57 MarkDuplicates Tracking 19543 as yet unmatched pairs. 36 records in RAM.
INFO 2026-06-08 08:07:59 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 2s. Last read position: chr1:148,640,077
INFO 2026-06-08 08:07:59 MarkDuplicates Tracking 19990 as yet unmatched pairs. 227 records in RAM.
INFO 2026-06-08 08:08:01 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:149,885,614
INFO 2026-06-08 08:08:01 MarkDuplicates Tracking 20111 as yet unmatched pairs. 20 records in RAM.
INFO 2026-06-08 08:08:02 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:150,842,433
INFO 2026-06-08 08:08:02 MarkDuplicates Tracking 20758 as yet unmatched pairs. 59 records in RAM.
INFO 2026-06-08 08:08:04 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:152,214,970
INFO 2026-06-08 08:08:04 MarkDuplicates Tracking 21322 as yet unmatched pairs. 122 records in RAM.
INFO 2026-06-08 08:08:06 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:154,170,397
INFO 2026-06-08 08:08:06 MarkDuplicates Tracking 22728 as yet unmatched pairs. 1045 records in RAM.
INFO 2026-06-08 08:08:09 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 2s. Last read position: chr1:154,967,980
INFO 2026-06-08 08:08:09 MarkDuplicates Tracking 22559 as yet unmatched pairs. 172 records in RAM.
INFO 2026-06-08 08:08:11 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 2s. Last read position: chr1:155,213,334
INFO 2026-06-08 08:08:11 MarkDuplicates Tracking 23008 as yet unmatched pairs. 4 records in RAM.
INFO 2026-06-08 08:08:14 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 2s. Last read position: chr1:155,915,843
INFO 2026-06-08 08:08:14 MarkDuplicates Tracking 23654 as yet unmatched pairs. 52 records in RAM.
INFO 2026-06-08 08:08:16 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:156,138,647
INFO 2026-06-08 08:08:16 MarkDuplicates Tracking 25182 as yet unmatched pairs. 779 records in RAM.
INFO 2026-06-08 08:08:18 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:156,978,206
INFO 2026-06-08 08:08:18 MarkDuplicates Tracking 25206 as yet unmatched pairs. 32 records in RAM.
INFO 2026-06-08 08:08:20 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:161,048,419
INFO 2026-06-08 08:08:20 MarkDuplicates Tracking 25876 as yet unmatched pairs. 25 records in RAM.
INFO 2026-06-08 08:08:21 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:163,168,262
INFO 2026-06-08 08:08:21 MarkDuplicates Tracking 26390 as yet unmatched pairs. 2 records in RAM.
INFO 2026-06-08 08:08:25 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 3s. Last read position: chr1:170,730,333
INFO 2026-06-08 08:08:25 MarkDuplicates Tracking 27397 as yet unmatched pairs. 336 records in RAM.
INFO 2026-06-08 08:08:27 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 2s. Last read position: chr1:175,162,203
INFO 2026-06-08 08:08:27 MarkDuplicates Tracking 27594 as yet unmatched pairs. 5 records in RAM.
INFO 2026-06-08 08:08:29 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 2s. Last read position: chr1:183,127,356
INFO 2026-06-08 08:08:29 MarkDuplicates Tracking 28393 as yet unmatched pairs. 97 records in RAM.
INFO 2026-06-08 08:08:32 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 2s. Last read position: chr1:186,343,394
INFO 2026-06-08 08:08:32 MarkDuplicates Tracking 28994 as yet unmatched pairs. 127 records in RAM.
INFO 2026-06-08 08:08:34 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 2s. Last read position: chr1:201,622,944
INFO 2026-06-08 08:08:34 MarkDuplicates Tracking 29510 as yet unmatched pairs. 93 records in RAM.
INFO 2026-06-08 08:08:36 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr1:203,486,727
INFO 2026-06-08 08:08:36 MarkDuplicates Tracking 30165 as yet unmatched pairs. 147 records in RAM.
INFO 2026-06-08 08:08:39 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 2s. Last read position: chr1:206,454,973
INFO 2026-06-08 08:08:39 MarkDuplicates Tracking 30653 as yet unmatched pairs. 15 records in RAM.
INFO 2026-06-08 08:08:41 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 2s. Last read position: chr1:211,978,492
INFO 2026-06-08 08:08:41 MarkDuplicates Tracking 31319 as yet unmatched pairs. 17 records in RAM.
INFO 2026-06-08 08:08:43 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr1:222,644,411
INFO 2026-06-08 08:08:43 MarkDuplicates Tracking 31994 as yet unmatched pairs. 61 records in RAM.
INFO 2026-06-08 08:08:45 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr1:225,567,372
INFO 2026-06-08 08:08:45 MarkDuplicates Tracking 32911 as yet unmatched pairs. 381 records in RAM.
INFO 2026-06-08 08:08:47 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 2s. Last read position: chr1:228,292,543
INFO 2026-06-08 08:08:47 MarkDuplicates Tracking 33274 as yet unmatched pairs. 30 records in RAM.
INFO 2026-06-08 08:08:49 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr1:233,218,038
INFO 2026-06-08 08:08:49 MarkDuplicates Tracking 34324 as yet unmatched pairs. 197 records in RAM.
INFO 2026-06-08 08:08:51 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr1:243,225,235
INFO 2026-06-08 08:08:51 MarkDuplicates Tracking 34827 as yet unmatched pairs. 17 records in RAM.
INFO 2026-06-08 08:08:53 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 2s. Last read position: chr1:247,309,711
INFO 2026-06-08 08:08:53 MarkDuplicates Tracking 35439 as yet unmatched pairs. 12 records in RAM.
INFO 2026-06-08 08:08:55 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 2s. Last read position: chr2:9,875,978
INFO 2026-06-08 08:08:55 MarkDuplicates Tracking 36102 as yet unmatched pairs. 35811 records in RAM.
INFO 2026-06-08 08:08:57 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 2s. Last read position: chr2:20,204,028
INFO 2026-06-08 08:08:57 MarkDuplicates Tracking 37949 as yet unmatched pairs. 37645 records in RAM.
INFO 2026-06-08 08:09:00 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 2s. Last read position: chr2:27,038,481
INFO 2026-06-08 08:09:00 MarkDuplicates Tracking 37433 as yet unmatched pairs. 37122 records in RAM.
INFO 2026-06-08 08:09:02 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:28,800,157
INFO 2026-06-08 08:09:02 MarkDuplicates Tracking 38221 as yet unmatched pairs. 37908 records in RAM.
INFO 2026-06-08 08:09:04 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:09:04 MarkDuplicates Tracking 265241 as yet unmatched pairs. 26934 records in RAM.
INFO 2026-06-08 08:09:06 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:37,200,819
INFO 2026-06-08 08:09:06 MarkDuplicates Tracking 323565 as yet unmatched pairs. 24035 records in RAM.
INFO 2026-06-08 08:09:08 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:43,700,195
INFO 2026-06-08 08:09:08 MarkDuplicates Tracking 322949 as yet unmatched pairs. 23417 records in RAM.
INFO 2026-06-08 08:09:10 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:55,049,921
INFO 2026-06-08 08:09:10 MarkDuplicates Tracking 322690 as yet unmatched pairs. 23151 records in RAM.
INFO 2026-06-08 08:09:12 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:64,636,023
INFO 2026-06-08 08:09:12 MarkDuplicates Tracking 321812 as yet unmatched pairs. 22271 records in RAM.
INFO 2026-06-08 08:09:14 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:71,133,222
INFO 2026-06-08 08:09:14 MarkDuplicates Tracking 321230 as yet unmatched pairs. 21688 records in RAM.
INFO 2026-06-08 08:09:16 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:74,961,941
INFO 2026-06-08 08:09:16 MarkDuplicates Tracking 320547 as yet unmatched pairs. 20999 records in RAM.
INFO 2026-06-08 08:09:17 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:87,785,074
INFO 2026-06-08 08:09:17 MarkDuplicates Tracking 319961 as yet unmatched pairs. 20410 records in RAM.
INFO 2026-06-08 08:09:20 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr2:97,589,585
INFO 2026-06-08 08:09:20 MarkDuplicates Tracking 319618 as yet unmatched pairs. 20063 records in RAM.
INFO 2026-06-08 08:09:21 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:108,719,569
INFO 2026-06-08 08:09:21 MarkDuplicates Tracking 319124 as yet unmatched pairs. 19560 records in RAM.
INFO 2026-06-08 08:09:23 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:110,563,255
INFO 2026-06-08 08:09:23 MarkDuplicates Tracking 318804 as yet unmatched pairs. 19235 records in RAM.
INFO 2026-06-08 08:09:25 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:119,368,186
INFO 2026-06-08 08:09:25 MarkDuplicates Tracking 318374 as yet unmatched pairs. 18797 records in RAM.
INFO 2026-06-08 08:09:27 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:135,510,583
INFO 2026-06-08 08:09:27 MarkDuplicates Tracking 317804 as yet unmatched pairs. 18216 records in RAM.
INFO 2026-06-08 08:09:29 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr2:159,383,608
INFO 2026-06-08 08:09:29 MarkDuplicates Tracking 317316 as yet unmatched pairs. 17722 records in RAM.
INFO 2026-06-08 08:09:31 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 2s. Last read position: chr2:171,837,164
INFO 2026-06-08 08:09:31 MarkDuplicates Tracking 316731 as yet unmatched pairs. 17130 records in RAM.
INFO 2026-06-08 08:09:34 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 2s. Last read position: chr2:182,728,600
INFO 2026-06-08 08:09:34 MarkDuplicates Tracking 316216 as yet unmatched pairs. 16610 records in RAM.
INFO 2026-06-08 08:09:36 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 2s. Last read position: chr2:188,995,093
INFO 2026-06-08 08:09:36 MarkDuplicates Tracking 316180 as yet unmatched pairs. 16573 records in RAM.
INFO 2026-06-08 08:09:39 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 2s. Last read position: chr2:189,010,181
INFO 2026-06-08 08:09:39 MarkDuplicates Tracking 315139 as yet unmatched pairs. 15528 records in RAM.
INFO 2026-06-08 08:09:41 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:189,133,722
INFO 2026-06-08 08:09:41 MarkDuplicates Tracking 314321 as yet unmatched pairs. 14710 records in RAM.
INFO 2026-06-08 08:09:43 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 2s. Last read position: chr2:200,477,875
INFO 2026-06-08 08:09:43 MarkDuplicates Tracking 313471 as yet unmatched pairs. 13857 records in RAM.
INFO 2026-06-08 08:09:45 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 2s. Last read position: chr2:207,560,128
INFO 2026-06-08 08:09:45 MarkDuplicates Tracking 312966 as yet unmatched pairs. 13351 records in RAM.
INFO 2026-06-08 08:09:47 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:215,361,972
INFO 2026-06-08 08:09:47 MarkDuplicates Tracking 320975 as yet unmatched pairs. 21355 records in RAM.
INFO 2026-06-08 08:09:49 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:215,367,981
INFO 2026-06-08 08:09:49 MarkDuplicates Tracking 316019 as yet unmatched pairs. 16399 records in RAM.
INFO 2026-06-08 08:09:51 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 2s. Last read position: chr2:215,372,077
INFO 2026-06-08 08:09:51 MarkDuplicates Tracking 316242 as yet unmatched pairs. 16622 records in RAM.
INFO 2026-06-08 08:09:53 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,352
INFO 2026-06-08 08:09:53 MarkDuplicates Tracking 316372 as yet unmatched pairs. 16752 records in RAM.
INFO 2026-06-08 08:09:55 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 2s. Last read position: chr2:215,375,382
INFO 2026-06-08 08:09:55 MarkDuplicates Tracking 321181 as yet unmatched pairs. 21555 records in RAM.
INFO 2026-06-08 08:09:57 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 2s. Last read position: chr2:215,378,177
INFO 2026-06-08 08:09:57 MarkDuplicates Tracking 314121 as yet unmatched pairs. 14495 records in RAM.
INFO 2026-06-08 08:10:00 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 2s. Last read position: chr2:215,382,212
INFO 2026-06-08 08:10:00 MarkDuplicates Tracking 314147 as yet unmatched pairs. 14520 records in RAM.
INFO 2026-06-08 08:10:02 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 2s. Last read position: chr2:215,384,931
INFO 2026-06-08 08:10:02 MarkDuplicates Tracking 311843 as yet unmatched pairs. 12216 records in RAM.
INFO 2026-06-08 08:10:04 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 2s. Last read position: chr2:215,391,709
INFO 2026-06-08 08:10:04 MarkDuplicates Tracking 309701 as yet unmatched pairs. 10074 records in RAM.
INFO 2026-06-08 08:10:06 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 2s. Last read position: chr2:215,397,737
INFO 2026-06-08 08:10:06 MarkDuplicates Tracking 311297 as yet unmatched pairs. 11670 records in RAM.
INFO 2026-06-08 08:10:09 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 2s. Last read position: chr2:215,406,276
INFO 2026-06-08 08:10:09 MarkDuplicates Tracking 311235 as yet unmatched pairs. 11607 records in RAM.
INFO 2026-06-08 08:10:11 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,129
INFO 2026-06-08 08:10:11 MarkDuplicates Tracking 313973 as yet unmatched pairs. 14345 records in RAM.
INFO 2026-06-08 08:10:13 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 2s. Last read position: chr2:215,409,989
INFO 2026-06-08 08:10:13 MarkDuplicates Tracking 309336 as yet unmatched pairs. 9708 records in RAM.
INFO 2026-06-08 08:10:15 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr2:215,420,779
INFO 2026-06-08 08:10:15 MarkDuplicates Tracking 307446 as yet unmatched pairs. 7817 records in RAM.
INFO 2026-06-08 08:10:17 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 2s. Last read position: chr2:215,425,152
INFO 2026-06-08 08:10:17 MarkDuplicates Tracking 308151 as yet unmatched pairs. 8514 records in RAM.
INFO 2026-06-08 08:10:19 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 2s. Last read position: chr2:215,431,927
INFO 2026-06-08 08:10:19 MarkDuplicates Tracking 307433 as yet unmatched pairs. 7786 records in RAM.
INFO 2026-06-08 08:10:22 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 2s. Last read position: chr2:216,678,208
INFO 2026-06-08 08:10:22 MarkDuplicates Tracking 303859 as yet unmatched pairs. 4206 records in RAM.
INFO 2026-06-08 08:10:24 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 2s. Last read position: chr2:219,230,342
INFO 2026-06-08 08:10:24 MarkDuplicates Tracking 303057 as yet unmatched pairs. 3404 records in RAM.
INFO 2026-06-08 08:10:26 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr2:226,798,238
INFO 2026-06-08 08:10:26 MarkDuplicates Tracking 302171 as yet unmatched pairs. 2444 records in RAM.
INFO 2026-06-08 08:10:28 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr2:235,915,590
INFO 2026-06-08 08:10:28 MarkDuplicates Tracking 301571 as yet unmatched pairs. 1836 records in RAM.
INFO 2026-06-08 08:10:30 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 2s. Last read position: chr2:237,371,732
INFO 2026-06-08 08:10:30 MarkDuplicates Tracking 301474 as yet unmatched pairs. 1738 records in RAM.
INFO 2026-06-08 08:10:32 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr2:240,466,133
INFO 2026-06-08 08:10:32 MarkDuplicates Tracking 300410 as yet unmatched pairs. 671 records in RAM.
INFO 2026-06-08 08:10:35 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 2s. Last read position: chr3:4,983,418
INFO 2026-06-08 08:10:35 MarkDuplicates Tracking 299913 as yet unmatched pairs. 17916 records in RAM.
INFO 2026-06-08 08:10:37 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 2s. Last read position: chr3:10,301,071
INFO 2026-06-08 08:10:37 MarkDuplicates Tracking 299043 as yet unmatched pairs. 17040 records in RAM.
INFO 2026-06-08 08:10:39 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 2s. Last read position: chr3:14,402,742
INFO 2026-06-08 08:10:39 MarkDuplicates Tracking 298437 as yet unmatched pairs. 16430 records in RAM.
INFO 2026-06-08 08:10:42 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 2s. Last read position: chr3:24,457,322
INFO 2026-06-08 08:10:42 MarkDuplicates Tracking 297833 as yet unmatched pairs. 15820 records in RAM.
INFO 2026-06-08 08:10:44 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 2s. Last read position: chr3:36,855,558
INFO 2026-06-08 08:10:44 MarkDuplicates Tracking 297214 as yet unmatched pairs. 15187 records in RAM.
INFO 2026-06-08 08:10:46 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 2s. Last read position: chr3:41,236,633
INFO 2026-06-08 08:10:46 MarkDuplicates Tracking 296853 as yet unmatched pairs. 14820 records in RAM.
INFO 2026-06-08 08:10:49 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 2s. Last read position: chr3:46,439,303
INFO 2026-06-08 08:10:49 MarkDuplicates Tracking 296504 as yet unmatched pairs. 14464 records in RAM.
INFO 2026-06-08 08:10:51 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:47,661,710
INFO 2026-06-08 08:10:51 MarkDuplicates Tracking 295398 as yet unmatched pairs. 13357 records in RAM.
INFO 2026-06-08 08:10:53 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 2s. Last read position: chr3:48,659,091
INFO 2026-06-08 08:10:53 MarkDuplicates Tracking 294768 as yet unmatched pairs. 12725 records in RAM.
INFO 2026-06-08 08:10:56 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 2s. Last read position: chr3:49,132,517
INFO 2026-06-08 08:10:56 MarkDuplicates Tracking 294253 as yet unmatched pairs. 12208 records in RAM.
INFO 2026-06-08 08:10:58 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:50,176,812
INFO 2026-06-08 08:10:58 MarkDuplicates Tracking 293316 as yet unmatched pairs. 11269 records in RAM.
INFO 2026-06-08 08:11:00 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 2s. Last read position: chr3:52,435,828
INFO 2026-06-08 08:11:00 MarkDuplicates Tracking 292626 as yet unmatched pairs. 10578 records in RAM.
INFO 2026-06-08 08:11:03 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 2s. Last read position: chr3:58,077,178
INFO 2026-06-08 08:11:03 MarkDuplicates Tracking 292042 as yet unmatched pairs. 9990 records in RAM.
INFO 2026-06-08 08:11:05 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 2s. Last read position: chr3:69,879,181
INFO 2026-06-08 08:11:05 MarkDuplicates Tracking 291704 as yet unmatched pairs. 9636 records in RAM.
INFO 2026-06-08 08:11:07 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr3:99,794,541
INFO 2026-06-08 08:11:07 MarkDuplicates Tracking 290789 as yet unmatched pairs. 8714 records in RAM.
INFO 2026-06-08 08:11:09 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr3:111,145,015
INFO 2026-06-08 08:11:09 MarkDuplicates Tracking 290014 as yet unmatched pairs. 7938 records in RAM.
INFO 2026-06-08 08:11:11 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 2s. Last read position: chr3:120,328,747
INFO 2026-06-08 08:11:11 MarkDuplicates Tracking 289425 as yet unmatched pairs. 7342 records in RAM.
INFO 2026-06-08 08:11:13 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr3:123,638,088
INFO 2026-06-08 08:11:13 MarkDuplicates Tracking 288903 as yet unmatched pairs. 6816 records in RAM.
INFO 2026-06-08 08:11:15 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr3:127,017,425
INFO 2026-06-08 08:11:15 MarkDuplicates Tracking 288297 as yet unmatched pairs. 6207 records in RAM.
INFO 2026-06-08 08:11:17 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr3:129,559,678
INFO 2026-06-08 08:11:17 MarkDuplicates Tracking 287646 as yet unmatched pairs. 5554 records in RAM.
INFO 2026-06-08 08:11:19 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 2s. Last read position: chr3:136,017,728
INFO 2026-06-08 08:11:19 MarkDuplicates Tracking 287063 as yet unmatched pairs. 4968 records in RAM.
INFO 2026-06-08 08:11:20 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr3:143,056,310
INFO 2026-06-08 08:11:20 MarkDuplicates Tracking 286372 as yet unmatched pairs. 4272 records in RAM.
INFO 2026-06-08 08:11:22 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr3:151,300,078
INFO 2026-06-08 08:11:22 MarkDuplicates Tracking 285638 as yet unmatched pairs. 3532 records in RAM.
INFO 2026-06-08 08:11:24 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 2s. Last read position: chr3:167,688,650
INFO 2026-06-08 08:11:24 MarkDuplicates Tracking 285109 as yet unmatched pairs. 2992 records in RAM.
INFO 2026-06-08 08:11:26 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr3:179,210,442
INFO 2026-06-08 08:11:26 MarkDuplicates Tracking 284625 as yet unmatched pairs. 2502 records in RAM.
INFO 2026-06-08 08:11:28 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 2s. Last read position: chr3:184,326,904
INFO 2026-06-08 08:11:28 MarkDuplicates Tracking 283910 as yet unmatched pairs. 1782 records in RAM.
INFO 2026-06-08 08:11:30 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr3:188,609,390
INFO 2026-06-08 08:11:30 MarkDuplicates Tracking 284445 as yet unmatched pairs. 2312 records in RAM.
INFO 2026-06-08 08:11:32 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr3:195,725,433
INFO 2026-06-08 08:11:32 MarkDuplicates Tracking 282696 as yet unmatched pairs. 561 records in RAM.
INFO 2026-06-08 08:11:34 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 2s. Last read position: chr4:751,131
INFO 2026-06-08 08:11:34 MarkDuplicates Tracking 282075 as yet unmatched pairs. 8279 records in RAM.
INFO 2026-06-08 08:11:37 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 2s. Last read position: chr4:2,746,425
INFO 2026-06-08 08:11:37 MarkDuplicates Tracking 281263 as yet unmatched pairs. 7466 records in RAM.
INFO 2026-06-08 08:11:39 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 2s. Last read position: chr4:8,270,248
INFO 2026-06-08 08:11:39 MarkDuplicates Tracking 280576 as yet unmatched pairs. 6774 records in RAM.
INFO 2026-06-08 08:11:41 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 2s. Last read position: chr4:25,662,740
INFO 2026-06-08 08:11:41 MarkDuplicates Tracking 280075 as yet unmatched pairs. 6263 records in RAM.
INFO 2026-06-08 08:11:44 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 2s. Last read position: chr4:41,013,695
INFO 2026-06-08 08:11:44 MarkDuplicates Tracking 279310 as yet unmatched pairs. 5488 records in RAM.
INFO 2026-06-08 08:11:45 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr4:56,973,238
INFO 2026-06-08 08:11:45 MarkDuplicates Tracking 278772 as yet unmatched pairs. 4942 records in RAM.
INFO 2026-06-08 08:11:48 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 2s. Last read position: chr4:77,011,841
INFO 2026-06-08 08:11:48 MarkDuplicates Tracking 278367 as yet unmatched pairs. 4533 records in RAM.
INFO 2026-06-08 08:11:50 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr4:87,473,773
INFO 2026-06-08 08:11:50 MarkDuplicates Tracking 277734 as yet unmatched pairs. 3899 records in RAM.
INFO 2026-06-08 08:11:51 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr4:103,149,204
INFO 2026-06-08 08:11:51 MarkDuplicates Tracking 277067 as yet unmatched pairs. 3231 records in RAM.
INFO 2026-06-08 08:11:53 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr4:121,677,879
INFO 2026-06-08 08:11:53 MarkDuplicates Tracking 276593 as yet unmatched pairs. 2740 records in RAM.
INFO 2026-06-08 08:11:55 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr4:143,513,860
INFO 2026-06-08 08:11:55 MarkDuplicates Tracking 276017 as yet unmatched pairs. 2143 records in RAM.
INFO 2026-06-08 08:11:57 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 2s. Last read position: chr4:153,788,580
INFO 2026-06-08 08:11:57 MarkDuplicates Tracking 275671 as yet unmatched pairs. 1785 records in RAM.
INFO 2026-06-08 08:12:00 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 2s. Last read position: chr4:168,878,041
INFO 2026-06-08 08:12:00 MarkDuplicates Tracking 275310 as yet unmatched pairs. 1421 records in RAM.
INFO 2026-06-08 08:12:01 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr4:186,603,424
INFO 2026-06-08 08:12:01 MarkDuplicates Tracking 274159 as yet unmatched pairs. 267 records in RAM.
INFO 2026-06-08 08:12:03 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 2s. Last read position: chr5:6,746,283
INFO 2026-06-08 08:12:03 MarkDuplicates Tracking 273395 as yet unmatched pairs. 13317 records in RAM.
INFO 2026-06-08 08:12:05 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr5:14,388,615
INFO 2026-06-08 08:12:05 MarkDuplicates Tracking 273294 as yet unmatched pairs. 13209 records in RAM.
INFO 2026-06-08 08:12:07 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr5:16,701,205
INFO 2026-06-08 08:12:07 MarkDuplicates Tracking 271898 as yet unmatched pairs. 11808 records in RAM.
INFO 2026-06-08 08:12:09 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr5:37,206,307
INFO 2026-06-08 08:12:09 MarkDuplicates Tracking 271323 as yet unmatched pairs. 11229 records in RAM.
INFO 2026-06-08 08:12:11 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr5:56,815,792
INFO 2026-06-08 08:12:11 MarkDuplicates Tracking 270762 as yet unmatched pairs. 10665 records in RAM.
INFO 2026-06-08 08:12:13 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr5:70,449,652
INFO 2026-06-08 08:12:13 MarkDuplicates Tracking 270259 as yet unmatched pairs. 10160 records in RAM.
INFO 2026-06-08 08:12:15 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr5:78,216,092
INFO 2026-06-08 08:12:15 MarkDuplicates Tracking 269806 as yet unmatched pairs. 9703 records in RAM.
INFO 2026-06-08 08:12:17 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr5:83,540,398
INFO 2026-06-08 08:12:17 MarkDuplicates Tracking 269529 as yet unmatched pairs. 9423 records in RAM.
INFO 2026-06-08 08:12:18 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr5:102,694,005
INFO 2026-06-08 08:12:18 MarkDuplicates Tracking 268662 as yet unmatched pairs. 8552 records in RAM.
INFO 2026-06-08 08:12:21 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 2s. Last read position: chr5:122,077,721
INFO 2026-06-08 08:12:21 MarkDuplicates Tracking 268190 as yet unmatched pairs. 8077 records in RAM.
INFO 2026-06-08 08:12:23 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 2s. Last read position: chr5:134,620,947
INFO 2026-06-08 08:12:23 MarkDuplicates Tracking 267485 as yet unmatched pairs. 7368 records in RAM.
INFO 2026-06-08 08:12:25 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr5:139,574,569
INFO 2026-06-08 08:12:25 MarkDuplicates Tracking 266942 as yet unmatched pairs. 6823 records in RAM.
INFO 2026-06-08 08:12:27 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 2s. Last read position: chr5:141,214,714
INFO 2026-06-08 08:12:27 MarkDuplicates Tracking 266349 as yet unmatched pairs. 6097 records in RAM.
INFO 2026-06-08 08:12:29 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr5:141,956,328
INFO 2026-06-08 08:12:29 MarkDuplicates Tracking 265547 as yet unmatched pairs. 5294 records in RAM.
INFO 2026-06-08 08:12:31 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 2s. Last read position: chr5:150,117,740
INFO 2026-06-08 08:12:31 MarkDuplicates Tracking 265451 as yet unmatched pairs. 5196 records in RAM.
INFO 2026-06-08 08:12:33 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,217
INFO 2026-06-08 08:12:33 MarkDuplicates Tracking 268412 as yet unmatched pairs. 8157 records in RAM.
INFO 2026-06-08 08:12:35 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr5:150,648,082
INFO 2026-06-08 08:12:35 MarkDuplicates Tracking 263747 as yet unmatched pairs. 3491 records in RAM.
INFO 2026-06-08 08:12:37 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr5:151,786,656
INFO 2026-06-08 08:12:37 MarkDuplicates Tracking 263196 as yet unmatched pairs. 2938 records in RAM.
INFO 2026-06-08 08:12:39 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr5:170,794,236
INFO 2026-06-08 08:12:39 MarkDuplicates Tracking 262458 as yet unmatched pairs. 2185 records in RAM.
INFO 2026-06-08 08:12:41 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr5:177,332,072
INFO 2026-06-08 08:12:41 MarkDuplicates Tracking 262076 as yet unmatched pairs. 1798 records in RAM.
INFO 2026-06-08 08:12:42 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr5:179,706,262
INFO 2026-06-08 08:12:42 MarkDuplicates Tracking 261214 as yet unmatched pairs. 933 records in RAM.
INFO 2026-06-08 08:12:44 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr5:181,239,066
INFO 2026-06-08 08:12:44 MarkDuplicates Tracking 260450 as yet unmatched pairs. 168 records in RAM.
INFO 2026-06-08 08:12:46 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 2s. Last read position: chr6:7,230,498
INFO 2026-06-08 08:12:46 MarkDuplicates Tracking 259838 as yet unmatched pairs. 16139 records in RAM.
INFO 2026-06-08 08:12:48 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 2s. Last read position: chr6:12,294,004
INFO 2026-06-08 08:12:48 MarkDuplicates Tracking 259055 as yet unmatched pairs. 15354 records in RAM.
INFO 2026-06-08 08:12:50 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:22,042,966
INFO 2026-06-08 08:12:50 MarkDuplicates Tracking 258360 as yet unmatched pairs. 14650 records in RAM.
INFO 2026-06-08 08:12:52 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 2s. Last read position: chr6:29,604,540
INFO 2026-06-08 08:12:52 MarkDuplicates Tracking 257941 as yet unmatched pairs. 14226 records in RAM.
INFO 2026-06-08 08:12:54 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr6:30,584,463
INFO 2026-06-08 08:12:54 MarkDuplicates Tracking 257352 as yet unmatched pairs. 13636 records in RAM.
INFO 2026-06-08 08:12:56 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 2s. Last read position: chr6:31,271,830
INFO 2026-06-08 08:12:56 MarkDuplicates Tracking 257294 as yet unmatched pairs. 13575 records in RAM.
INFO 2026-06-08 08:12:59 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 2s. Last read position: chr6:31,649,561
INFO 2026-06-08 08:12:59 MarkDuplicates Tracking 256164 as yet unmatched pairs. 12445 records in RAM.
INFO 2026-06-08 08:13:01 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr6:31,968,480
INFO 2026-06-08 08:13:01 MarkDuplicates Tracking 255570 as yet unmatched pairs. 11837 records in RAM.
INFO 2026-06-08 08:13:03 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr6:32,579,076
INFO 2026-06-08 08:13:03 MarkDuplicates Tracking 255053 as yet unmatched pairs. 11319 records in RAM.
INFO 2026-06-08 08:13:05 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:33,301,178
INFO 2026-06-08 08:13:05 MarkDuplicates Tracking 254363 as yet unmatched pairs. 10629 records in RAM.
INFO 2026-06-08 08:13:07 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 2s. Last read position: chr6:34,836,293
INFO 2026-06-08 08:13:07 MarkDuplicates Tracking 253568 as yet unmatched pairs. 9815 records in RAM.
INFO 2026-06-08 08:13:09 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 2s. Last read position: chr6:41,588,683
INFO 2026-06-08 08:13:09 MarkDuplicates Tracking 253113 as yet unmatched pairs. 9354 records in RAM.
INFO 2026-06-08 08:13:11 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 2s. Last read position: chr6:43,206,355
INFO 2026-06-08 08:13:11 MarkDuplicates Tracking 252347 as yet unmatched pairs. 8587 records in RAM.
INFO 2026-06-08 08:13:13 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr6:46,410,410
INFO 2026-06-08 08:13:13 MarkDuplicates Tracking 251483 as yet unmatched pairs. 7719 records in RAM.
INFO 2026-06-08 08:13:15 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr6:56,552,643
INFO 2026-06-08 08:13:15 MarkDuplicates Tracking 251055 as yet unmatched pairs. 7283 records in RAM.
INFO 2026-06-08 08:13:17 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 2s. Last read position: chr6:75,087,589
INFO 2026-06-08 08:13:17 MarkDuplicates Tracking 251625 as yet unmatched pairs. 7849 records in RAM.
INFO 2026-06-08 08:13:19 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr6:75,156,341
INFO 2026-06-08 08:13:19 MarkDuplicates Tracking 250746 as yet unmatched pairs. 6970 records in RAM.
INFO 2026-06-08 08:13:21 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 2s. Last read position: chr6:83,135,710
INFO 2026-06-08 08:13:21 MarkDuplicates Tracking 249278 as yet unmatched pairs. 5500 records in RAM.
INFO 2026-06-08 08:13:23 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr6:105,722,348
INFO 2026-06-08 08:13:23 MarkDuplicates Tracking 248606 as yet unmatched pairs. 4818 records in RAM.
INFO 2026-06-08 08:13:25 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr6:113,860,242
INFO 2026-06-08 08:13:25 MarkDuplicates Tracking 247981 as yet unmatched pairs. 4184 records in RAM.
INFO 2026-06-08 08:13:27 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 2s. Last read position: chr6:128,078,867
INFO 2026-06-08 08:13:27 MarkDuplicates Tracking 247408 as yet unmatched pairs. 3598 records in RAM.
INFO 2026-06-08 08:13:29 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 2s. Last read position: chr6:138,432,958
INFO 2026-06-08 08:13:29 MarkDuplicates Tracking 246737 as yet unmatched pairs. 2918 records in RAM.
INFO 2026-06-08 08:13:31 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 2s. Last read position: chr6:149,683,840
INFO 2026-06-08 08:13:31 MarkDuplicates Tracking 246288 as yet unmatched pairs. 2468 records in RAM.
INFO 2026-06-08 08:13:34 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 2s. Last read position: chr6:157,932,195
INFO 2026-06-08 08:13:34 MarkDuplicates Tracking 245536 as yet unmatched pairs. 1709 records in RAM.
INFO 2026-06-08 08:13:36 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 2s. Last read position: chr6:159,969,279
INFO 2026-06-08 08:13:36 MarkDuplicates Tracking 244972 as yet unmatched pairs. 1145 records in RAM.
INFO 2026-06-08 08:13:38 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 2s. Last read position: chr6:169,228,234
INFO 2026-06-08 08:13:38 MarkDuplicates Tracking 244535 as yet unmatched pairs. 698 records in RAM.
INFO 2026-06-08 08:13:41 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 2s. Last read position: chr7:1,473,854
INFO 2026-06-08 08:13:41 MarkDuplicates Tracking 243679 as yet unmatched pairs. 16840 records in RAM.
INFO 2026-06-08 08:13:43 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 2s. Last read position: chr7:5,370,713
INFO 2026-06-08 08:13:43 MarkDuplicates Tracking 243041 as yet unmatched pairs. 16198 records in RAM.
INFO 2026-06-08 08:13:45 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 2s. Last read position: chr7:5,528,659
INFO 2026-06-08 08:13:45 MarkDuplicates Tracking 242267 as yet unmatched pairs. 15424 records in RAM.
INFO 2026-06-08 08:13:47 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr7:10,974,291
INFO 2026-06-08 08:13:47 MarkDuplicates Tracking 241393 as yet unmatched pairs. 14550 records in RAM.
INFO 2026-06-08 08:13:49 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 2s. Last read position: chr7:26,864,424
INFO 2026-06-08 08:13:49 MarkDuplicates Tracking 240715 as yet unmatched pairs. 13871 records in RAM.
INFO 2026-06-08 08:13:51 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr7:37,914,373
INFO 2026-06-08 08:13:51 MarkDuplicates Tracking 240073 as yet unmatched pairs. 13223 records in RAM.
INFO 2026-06-08 08:13:53 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:44,104,707
INFO 2026-06-08 08:13:53 MarkDuplicates Tracking 239718 as yet unmatched pairs. 12864 records in RAM.
INFO 2026-06-08 08:13:55 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 2s. Last read position: chr7:44,114,151
INFO 2026-06-08 08:13:55 MarkDuplicates Tracking 239312 as yet unmatched pairs. 12458 records in RAM.
INFO 2026-06-08 08:13:57 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 2s. Last read position: chr7:55,019,128
INFO 2026-06-08 08:13:57 MarkDuplicates Tracking 238182 as yet unmatched pairs. 11321 records in RAM.
INFO 2026-06-08 08:13:59 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr7:67,299,328
INFO 2026-06-08 08:13:59 MarkDuplicates Tracking 237562 as yet unmatched pairs. 10690 records in RAM.
INFO 2026-06-08 08:14:01 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr7:73,683,213
INFO 2026-06-08 08:14:01 MarkDuplicates Tracking 237248 as yet unmatched pairs. 10373 records in RAM.
INFO 2026-06-08 08:14:03 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 2s. Last read position: chr7:75,196,641
INFO 2026-06-08 08:14:03 MarkDuplicates Tracking 236875 as yet unmatched pairs. 9998 records in RAM.
INFO 2026-06-08 08:14:05 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr7:76,455,677
INFO 2026-06-08 08:14:05 MarkDuplicates Tracking 236114 as yet unmatched pairs. 9236 records in RAM.
INFO 2026-06-08 08:14:06 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr7:91,045,926
INFO 2026-06-08 08:14:06 MarkDuplicates Tracking 235747 as yet unmatched pairs. 8863 records in RAM.
INFO 2026-06-08 08:14:09 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 2s. Last read position: chr7:94,400,247
INFO 2026-06-08 08:14:09 MarkDuplicates Tracking 235781 as yet unmatched pairs. 8895 records in RAM.
INFO 2026-06-08 08:14:11 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 2s. Last read position: chr7:94,417,767
INFO 2026-06-08 08:14:11 MarkDuplicates Tracking 234785 as yet unmatched pairs. 7899 records in RAM.
INFO 2026-06-08 08:14:13 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 2s. Last read position: chr7:94,545,678
INFO 2026-06-08 08:14:13 MarkDuplicates Tracking 233755 as yet unmatched pairs. 6869 records in RAM.
INFO 2026-06-08 08:14:15 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr7:100,096,072
INFO 2026-06-08 08:14:15 MarkDuplicates Tracking 233128 as yet unmatched pairs. 6234 records in RAM.
INFO 2026-06-08 08:14:17 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr7:100,888,296
INFO 2026-06-08 08:14:17 MarkDuplicates Tracking 232490 as yet unmatched pairs. 5595 records in RAM.
INFO 2026-06-08 08:14:19 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr7:102,541,251
INFO 2026-06-08 08:14:19 MarkDuplicates Tracking 232206 as yet unmatched pairs. 5308 records in RAM.
INFO 2026-06-08 08:14:20 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr7:102,656,442
INFO 2026-06-08 08:14:20 MarkDuplicates Tracking 231940 as yet unmatched pairs. 5042 records in RAM.
INFO 2026-06-08 08:14:22 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr7:108,564,755
INFO 2026-06-08 08:14:22 MarkDuplicates Tracking 231206 as yet unmatched pairs. 4304 records in RAM.
INFO 2026-06-08 08:14:24 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 2s. Last read position: chr7:127,704,868
INFO 2026-06-08 08:14:24 MarkDuplicates Tracking 231045 as yet unmatched pairs. 4136 records in RAM.
INFO 2026-06-08 08:14:26 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 1s. Last read position: chr7:131,510,949
INFO 2026-06-08 08:14:26 MarkDuplicates Tracking 230072 as yet unmatched pairs. 3161 records in RAM.
INFO 2026-06-08 08:14:27 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr7:138,554,849
INFO 2026-06-08 08:14:27 MarkDuplicates Tracking 229671 as yet unmatched pairs. 2756 records in RAM.
INFO 2026-06-08 08:14:29 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr7:143,382,834
INFO 2026-06-08 08:14:29 MarkDuplicates Tracking 229467 as yet unmatched pairs. 2552 records in RAM.
INFO 2026-06-08 08:14:31 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr7:149,011,885
INFO 2026-06-08 08:14:31 MarkDuplicates Tracking 228588 as yet unmatched pairs. 1673 records in RAM.
INFO 2026-06-08 08:14:33 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 1s. Last read position: chr7:151,240,409
INFO 2026-06-08 08:14:33 MarkDuplicates Tracking 227642 as yet unmatched pairs. 724 records in RAM.
INFO 2026-06-08 08:14:35 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 1s. Last read position: chr7:158,941,961
INFO 2026-06-08 08:14:35 MarkDuplicates Tracking 226945 as yet unmatched pairs. 23 records in RAM.
INFO 2026-06-08 08:14:37 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 2s. Last read position: chr8:12,537,190
INFO 2026-06-08 08:14:37 MarkDuplicates Tracking 226390 as yet unmatched pairs. 13161 records in RAM.
INFO 2026-06-08 08:14:39 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 2s. Last read position: chr8:22,291,523
INFO 2026-06-08 08:14:39 MarkDuplicates Tracking 225821 as yet unmatched pairs. 12586 records in RAM.
INFO 2026-06-08 08:14:41 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 2s. Last read position: chr8:26,291,783
INFO 2026-06-08 08:14:41 MarkDuplicates Tracking 225222 as yet unmatched pairs. 11982 records in RAM.
INFO 2026-06-08 08:14:44 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 2s. Last read position: chr8:32,727,947
INFO 2026-06-08 08:14:44 MarkDuplicates Tracking 224629 as yet unmatched pairs. 11386 records in RAM.
INFO 2026-06-08 08:14:46 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 2s. Last read position: chr8:38,457,376
INFO 2026-06-08 08:14:46 MarkDuplicates Tracking 224539 as yet unmatched pairs. 11293 records in RAM.
INFO 2026-06-08 08:14:48 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 2s. Last read position: chr8:47,732,136
INFO 2026-06-08 08:14:48 MarkDuplicates Tracking 223219 as yet unmatched pairs. 9969 records in RAM.
INFO 2026-06-08 08:14:50 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 2s. Last read position: chr8:64,591,993
INFO 2026-06-08 08:14:50 MarkDuplicates Tracking 222495 as yet unmatched pairs. 9242 records in RAM.
INFO 2026-06-08 08:14:52 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 2s. Last read position: chr8:73,422,657
INFO 2026-06-08 08:14:52 MarkDuplicates Tracking 221955 as yet unmatched pairs. 8701 records in RAM.
INFO 2026-06-08 08:14:54 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr8:94,643,326
INFO 2026-06-08 08:14:54 MarkDuplicates Tracking 221618 as yet unmatched pairs. 8358 records in RAM.
INFO 2026-06-08 08:14:56 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 2s. Last read position: chr8:101,633,626
INFO 2026-06-08 08:14:56 MarkDuplicates Tracking 220710 as yet unmatched pairs. 7447 records in RAM.
INFO 2026-06-08 08:14:58 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 2s. Last read position: chr8:115,587,502
INFO 2026-06-08 08:14:58 MarkDuplicates Tracking 220345 as yet unmatched pairs. 7078 records in RAM.
INFO 2026-06-08 08:15:00 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 2s. Last read position: chr8:123,645,781
INFO 2026-06-08 08:15:00 MarkDuplicates Tracking 219579 as yet unmatched pairs. 6300 records in RAM.
INFO 2026-06-08 08:15:03 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 2s. Last read position: chr8:133,264,569
INFO 2026-06-08 08:15:03 MarkDuplicates Tracking 219291 as yet unmatched pairs. 6005 records in RAM.
INFO 2026-06-08 08:15:05 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 2s. Last read position: chr8:143,559,532
INFO 2026-06-08 08:15:05 MarkDuplicates Tracking 218225 as yet unmatched pairs. 4927 records in RAM.
INFO 2026-06-08 08:15:08 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 2s. Last read position: chr8:143,858,419
INFO 2026-06-08 08:15:08 MarkDuplicates Tracking 217482 as yet unmatched pairs. 4183 records in RAM.
INFO 2026-06-08 08:15:09 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,618
INFO 2026-06-08 08:15:09 MarkDuplicates Tracking 218282 as yet unmatched pairs. 4982 records in RAM.
INFO 2026-06-08 08:15:11 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,606
INFO 2026-06-08 08:15:11 MarkDuplicates Tracking 218004 as yet unmatched pairs. 4704 records in RAM.
INFO 2026-06-08 08:15:12 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,720
INFO 2026-06-08 08:15:12 MarkDuplicates Tracking 217927 as yet unmatched pairs. 4615 records in RAM.
INFO 2026-06-08 08:15:14 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr8:143,868,066
INFO 2026-06-08 08:15:14 MarkDuplicates Tracking 216545 as yet unmatched pairs. 3232 records in RAM.
INFO 2026-06-08 08:15:15 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr8:143,922,506
INFO 2026-06-08 08:15:15 MarkDuplicates Tracking 215514 as yet unmatched pairs. 2201 records in RAM.
INFO 2026-06-08 08:15:17 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr8:144,082,672
INFO 2026-06-08 08:15:17 MarkDuplicates Tracking 214673 as yet unmatched pairs. 1355 records in RAM.
INFO 2026-06-08 08:15:19 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr8:144,506,833
INFO 2026-06-08 08:15:19 MarkDuplicates Tracking 213690 as yet unmatched pairs. 367 records in RAM.
INFO 2026-06-08 08:15:22 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 2s. Last read position: chr9:4,286,076
INFO 2026-06-08 08:15:22 MarkDuplicates Tracking 213022 as yet unmatched pairs. 11983 records in RAM.
INFO 2026-06-08 08:15:23 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr9:14,088,266
INFO 2026-06-08 08:15:23 MarkDuplicates Tracking 213541 as yet unmatched pairs. 12500 records in RAM.
INFO 2026-06-08 08:15:25 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 2s. Last read position: chr9:20,912,874
INFO 2026-06-08 08:15:25 MarkDuplicates Tracking 211889 as yet unmatched pairs. 10842 records in RAM.
INFO 2026-06-08 08:15:28 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 2s. Last read position: chr9:34,255,987
INFO 2026-06-08 08:15:28 MarkDuplicates Tracking 211139 as yet unmatched pairs. 10090 records in RAM.
INFO 2026-06-08 08:15:30 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 2s. Last read position: chr9:35,748,545
INFO 2026-06-08 08:15:30 MarkDuplicates Tracking 210459 as yet unmatched pairs. 9409 records in RAM.
INFO 2026-06-08 08:15:32 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 2s. Last read position: chr9:71,729,888
INFO 2026-06-08 08:15:32 MarkDuplicates Tracking 210107 as yet unmatched pairs. 8971 records in RAM.
INFO 2026-06-08 08:15:34 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 2s. Last read position: chr9:87,729,618
INFO 2026-06-08 08:15:34 MarkDuplicates Tracking 209451 as yet unmatched pairs. 8309 records in RAM.
INFO 2026-06-08 08:15:36 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 2s. Last read position: chr9:96,004,636
INFO 2026-06-08 08:15:36 MarkDuplicates Tracking 208783 as yet unmatched pairs. 7638 records in RAM.
INFO 2026-06-08 08:15:39 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 2s. Last read position: chr9:106,928,198
INFO 2026-06-08 08:15:39 MarkDuplicates Tracking 208127 as yet unmatched pairs. 6976 records in RAM.
INFO 2026-06-08 08:15:41 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 2s. Last read position: chr9:114,269,254
INFO 2026-06-08 08:15:41 MarkDuplicates Tracking 207400 as yet unmatched pairs. 6246 records in RAM.
INFO 2026-06-08 08:15:43 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 2s. Last read position: chr9:121,310,710
INFO 2026-06-08 08:15:43 MarkDuplicates Tracking 206803 as yet unmatched pairs. 5647 records in RAM.
INFO 2026-06-08 08:16:53 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 70s. Last read position: chr9:127,505,879
INFO 2026-06-08 08:16:53 MarkDuplicates Tracking 206111 as yet unmatched pairs. 4950 records in RAM.
INFO 2026-06-08 08:16:55 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 2s. Last read position: chr9:128,608,033
INFO 2026-06-08 08:16:55 MarkDuplicates Tracking 205399 as yet unmatched pairs. 4238 records in RAM.
INFO 2026-06-08 08:16:57 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 2s. Last read position: chr9:130,884,978
INFO 2026-06-08 08:16:57 MarkDuplicates Tracking 204822 as yet unmatched pairs. 3659 records in RAM.
INFO 2026-06-08 08:17:00 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 2s. Last read position: chr9:133,414,749
INFO 2026-06-08 08:17:00 MarkDuplicates Tracking 204007 as yet unmatched pairs. 2838 records in RAM.
INFO 2026-06-08 08:17:02 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 2s. Last read position: chr9:134,814,851
INFO 2026-06-08 08:17:02 MarkDuplicates Tracking 203509 as yet unmatched pairs. 2339 records in RAM.
INFO 2026-06-08 08:17:04 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr9:136,515,377
INFO 2026-06-08 08:17:04 MarkDuplicates Tracking 202356 as yet unmatched pairs. 1185 records in RAM.
INFO 2026-06-08 08:17:06 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 2s. Last read position: chr9:137,543,466
INFO 2026-06-08 08:17:06 MarkDuplicates Tracking 201400 as yet unmatched pairs. 225 records in RAM.
INFO 2026-06-08 08:17:08 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 2s. Last read position: chr10:5,749,189
INFO 2026-06-08 08:17:08 MarkDuplicates Tracking 200671 as yet unmatched pairs. 9659 records in RAM.
INFO 2026-06-08 08:17:10 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 2s. Last read position: chr10:16,754,871
INFO 2026-06-08 08:17:10 MarkDuplicates Tracking 200087 as yet unmatched pairs. 9069 records in RAM.
INFO 2026-06-08 08:17:12 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 2s. Last read position: chr10:24,523,651
INFO 2026-06-08 08:17:12 MarkDuplicates Tracking 199318 as yet unmatched pairs. 8299 records in RAM.
INFO 2026-06-08 08:17:15 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 2s. Last read position: chr10:29,523,569
INFO 2026-06-08 08:17:15 MarkDuplicates Tracking 199052 as yet unmatched pairs. 8032 records in RAM.
INFO 2026-06-08 08:17:17 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr10:32,910,223
INFO 2026-06-08 08:17:17 MarkDuplicates Tracking 198262 as yet unmatched pairs. 7239 records in RAM.
INFO 2026-06-08 08:17:18 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr10:45,699,470
INFO 2026-06-08 08:17:18 MarkDuplicates Tracking 197534 as yet unmatched pairs. 6503 records in RAM.
INFO 2026-06-08 08:17:20 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr10:51,153,298
INFO 2026-06-08 08:17:20 MarkDuplicates Tracking 197093 as yet unmatched pairs. 6059 records in RAM.
INFO 2026-06-08 08:17:22 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr10:68,044,494
INFO 2026-06-08 08:17:22 MarkDuplicates Tracking 196562 as yet unmatched pairs. 5525 records in RAM.
INFO 2026-06-08 08:17:24 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 2s. Last read position: chr10:73,499,124
INFO 2026-06-08 08:17:24 MarkDuplicates Tracking 195984 as yet unmatched pairs. 4946 records in RAM.
INFO 2026-06-08 08:17:26 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr10:78,035,583
INFO 2026-06-08 08:17:26 MarkDuplicates Tracking 195339 as yet unmatched pairs. 4298 records in RAM.
INFO 2026-06-08 08:17:28 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr10:88,935,240
INFO 2026-06-08 08:17:28 MarkDuplicates Tracking 195031 as yet unmatched pairs. 3974 records in RAM.
INFO 2026-06-08 08:17:30 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 2s. Last read position: chr10:95,432,509
INFO 2026-06-08 08:17:30 MarkDuplicates Tracking 194272 as yet unmatched pairs. 3214 records in RAM.
INFO 2026-06-08 08:17:31 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr10:100,987,097
INFO 2026-06-08 08:17:31 MarkDuplicates Tracking 193551 as yet unmatched pairs. 2488 records in RAM.
INFO 2026-06-08 08:17:33 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr10:103,602,085
INFO 2026-06-08 08:17:33 MarkDuplicates Tracking 193052 as yet unmatched pairs. 1987 records in RAM.
INFO 2026-06-08 08:17:35 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 2s. Last read position: chr10:119,038,284
INFO 2026-06-08 08:17:35 MarkDuplicates Tracking 192234 as yet unmatched pairs. 1152 records in RAM.
INFO 2026-06-08 08:17:37 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 2s. Last read position: chr10:125,823,575
INFO 2026-06-08 08:17:37 MarkDuplicates Tracking 191553 as yet unmatched pairs. 471 records in RAM.
INFO 2026-06-08 08:17:39 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:289,852
INFO 2026-06-08 08:17:39 MarkDuplicates Tracking 192083 as yet unmatched pairs. 21000 records in RAM.
INFO 2026-06-08 08:17:41 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 2s. Last read position: chr11:314,276
INFO 2026-06-08 08:17:41 MarkDuplicates Tracking 191293 as yet unmatched pairs. 20207 records in RAM.
INFO 2026-06-08 08:17:43 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr11:403,142
INFO 2026-06-08 08:17:43 MarkDuplicates Tracking 189411 as yet unmatched pairs. 18323 records in RAM.
INFO 2026-06-08 08:17:45 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr11:986,922
INFO 2026-06-08 08:17:45 MarkDuplicates Tracking 188555 as yet unmatched pairs. 17467 records in RAM.
INFO 2026-06-08 08:17:47 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:1,250,191
INFO 2026-06-08 08:17:47 MarkDuplicates Tracking 188462 as yet unmatched pairs. 17373 records in RAM.
INFO 2026-06-08 08:17:48 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:3,013,779
INFO 2026-06-08 08:17:48 MarkDuplicates Tracking 187481 as yet unmatched pairs. 16388 records in RAM.
INFO 2026-06-08 08:17:50 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:6,631,090
INFO 2026-06-08 08:17:50 MarkDuplicates Tracking 186739 as yet unmatched pairs. 15645 records in RAM.
INFO 2026-06-08 08:17:52 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr11:10,803,117
INFO 2026-06-08 08:17:52 MarkDuplicates Tracking 186317 as yet unmatched pairs. 15220 records in RAM.
INFO 2026-06-08 08:17:54 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:18,402,984
INFO 2026-06-08 08:17:54 MarkDuplicates Tracking 185699 as yet unmatched pairs. 14598 records in RAM.
INFO 2026-06-08 08:17:56 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:34,086,387
INFO 2026-06-08 08:17:56 MarkDuplicates Tracking 185141 as yet unmatched pairs. 14037 records in RAM.
INFO 2026-06-08 08:17:57 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr11:46,310,056
INFO 2026-06-08 08:17:57 MarkDuplicates Tracking 184683 as yet unmatched pairs. 13574 records in RAM.
INFO 2026-06-08 08:17:59 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr11:47,767,078
INFO 2026-06-08 08:17:59 MarkDuplicates Tracking 184050 as yet unmatched pairs. 12937 records in RAM.
INFO 2026-06-08 08:18:01 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr11:57,802,099
INFO 2026-06-08 08:18:01 MarkDuplicates Tracking 183260 as yet unmatched pairs. 12147 records in RAM.
INFO 2026-06-08 08:18:03 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 2s. Last read position: chr11:61,840,334
INFO 2026-06-08 08:18:03 MarkDuplicates Tracking 182863 as yet unmatched pairs. 11702 records in RAM.
INFO 2026-06-08 08:18:05 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr11:62,530,097
INFO 2026-06-08 08:18:05 MarkDuplicates Tracking 182274 as yet unmatched pairs. 11112 records in RAM.
INFO 2026-06-08 08:18:07 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr11:63,750,175
INFO 2026-06-08 08:18:07 MarkDuplicates Tracking 181479 as yet unmatched pairs. 10316 records in RAM.
INFO 2026-06-08 08:18:09 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 2s. Last read position: chr11:64,935,295
INFO 2026-06-08 08:18:09 MarkDuplicates Tracking 180609 as yet unmatched pairs. 9445 records in RAM.
INFO 2026-06-08 08:18:11 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 2s. Last read position: chr11:65,502,248
INFO 2026-06-08 08:18:11 MarkDuplicates Tracking 180217 as yet unmatched pairs. 9047 records in RAM.
INFO 2026-06-08 08:18:13 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr11:65,641,049
INFO 2026-06-08 08:18:13 MarkDuplicates Tracking 178969 as yet unmatched pairs. 7798 records in RAM.
INFO 2026-06-08 08:18:15 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr11:66,315,801
INFO 2026-06-08 08:18:15 MarkDuplicates Tracking 178211 as yet unmatched pairs. 7037 records in RAM.
INFO 2026-06-08 08:18:17 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr11:67,497,177
INFO 2026-06-08 08:18:17 MarkDuplicates Tracking 177342 as yet unmatched pairs. 6163 records in RAM.
INFO 2026-06-08 08:18:18 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr11:70,407,360
INFO 2026-06-08 08:18:18 MarkDuplicates Tracking 176623 as yet unmatched pairs. 5441 records in RAM.
INFO 2026-06-08 08:18:20 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr11:73,297,159
INFO 2026-06-08 08:18:20 MarkDuplicates Tracking 175832 as yet unmatched pairs. 4650 records in RAM.
INFO 2026-06-08 08:18:22 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr11:76,665,881
INFO 2026-06-08 08:18:22 MarkDuplicates Tracking 175089 as yet unmatched pairs. 3907 records in RAM.
INFO 2026-06-08 08:18:23 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr11:88,509,188
INFO 2026-06-08 08:18:23 MarkDuplicates Tracking 174400 as yet unmatched pairs. 3212 records in RAM.
INFO 2026-06-08 08:18:25 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr11:102,349,862
INFO 2026-06-08 08:18:25 MarkDuplicates Tracking 173953 as yet unmatched pairs. 2759 records in RAM.
INFO 2026-06-08 08:18:27 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr11:114,312,113
INFO 2026-06-08 08:18:27 MarkDuplicates Tracking 173371 as yet unmatched pairs. 2175 records in RAM.
INFO 2026-06-08 08:18:29 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr11:118,627,852
INFO 2026-06-08 08:18:29 MarkDuplicates Tracking 173301 as yet unmatched pairs. 2104 records in RAM.
INFO 2026-06-08 08:18:30 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr11:121,045,694
INFO 2026-06-08 08:18:30 MarkDuplicates Tracking 171981 as yet unmatched pairs. 782 records in RAM.
INFO 2026-06-08 08:18:32 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr11:130,196,418
INFO 2026-06-08 08:18:32 MarkDuplicates Tracking 171410 as yet unmatched pairs. 199 records in RAM.
INFO 2026-06-08 08:18:34 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 2s. Last read position: chr12:2,830,289
INFO 2026-06-08 08:18:34 MarkDuplicates Tracking 170759 as yet unmatched pairs. 13799 records in RAM.
INFO 2026-06-08 08:18:36 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:6,891,822
INFO 2026-06-08 08:18:36 MarkDuplicates Tracking 170053 as yet unmatched pairs. 13087 records in RAM.
INFO 2026-06-08 08:18:38 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 2s. Last read position: chr12:8,214,396
INFO 2026-06-08 08:18:38 MarkDuplicates Tracking 169391 as yet unmatched pairs. 12415 records in RAM.
INFO 2026-06-08 08:18:40 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 2s. Last read position: chr12:13,214,594
INFO 2026-06-08 08:18:40 MarkDuplicates Tracking 168873 as yet unmatched pairs. 11896 records in RAM.
INFO 2026-06-08 08:18:42 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr12:27,370,186
INFO 2026-06-08 08:18:42 MarkDuplicates Tracking 168350 as yet unmatched pairs. 11371 records in RAM.
INFO 2026-06-08 08:18:44 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:46,361,099
INFO 2026-06-08 08:18:44 MarkDuplicates Tracking 167816 as yet unmatched pairs. 10835 records in RAM.
INFO 2026-06-08 08:18:46 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr12:49,101,270
INFO 2026-06-08 08:18:46 MarkDuplicates Tracking 167032 as yet unmatched pairs. 10051 records in RAM.
INFO 2026-06-08 08:18:48 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr12:50,992,848
INFO 2026-06-08 08:18:48 MarkDuplicates Tracking 166437 as yet unmatched pairs. 9456 records in RAM.
INFO 2026-06-08 08:18:49 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr12:53,383,315
INFO 2026-06-08 08:18:49 MarkDuplicates Tracking 165830 as yet unmatched pairs. 8848 records in RAM.
INFO 2026-06-08 08:18:51 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr12:56,104,724
INFO 2026-06-08 08:18:51 MarkDuplicates Tracking 165208 as yet unmatched pairs. 8216 records in RAM.
INFO 2026-06-08 08:18:53 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr12:56,716,187
INFO 2026-06-08 08:18:53 MarkDuplicates Tracking 164556 as yet unmatched pairs. 7564 records in RAM.
INFO 2026-06-08 08:18:55 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr12:57,183,812
INFO 2026-06-08 08:18:55 MarkDuplicates Tracking 163826 as yet unmatched pairs. 6833 records in RAM.
INFO 2026-06-08 08:18:57 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr12:57,716,487
INFO 2026-06-08 08:18:57 MarkDuplicates Tracking 163279 as yet unmatched pairs. 6286 records in RAM.
INFO 2026-06-08 08:18:58 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr12:69,239,668
INFO 2026-06-08 08:18:58 MarkDuplicates Tracking 162502 as yet unmatched pairs. 5501 records in RAM.
INFO 2026-06-08 08:19:00 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr12:91,108,852
INFO 2026-06-08 08:19:00 MarkDuplicates Tracking 162805 as yet unmatched pairs. 5794 records in RAM.
INFO 2026-06-08 08:19:02 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr12:101,726,247
INFO 2026-06-08 08:19:02 MarkDuplicates Tracking 161436 as yet unmatched pairs. 4425 records in RAM.
INFO 2026-06-08 08:19:04 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 2s. Last read position: chr12:108,645,426
INFO 2026-06-08 08:19:04 MarkDuplicates Tracking 160777 as yet unmatched pairs. 3765 records in RAM.
INFO 2026-06-08 08:19:06 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr12:112,267,177
INFO 2026-06-08 08:19:06 MarkDuplicates Tracking 160135 as yet unmatched pairs. 3120 records in RAM.
INFO 2026-06-08 08:19:08 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr12:117,761,240
INFO 2026-06-08 08:19:08 MarkDuplicates Tracking 159494 as yet unmatched pairs. 2476 records in RAM.
INFO 2026-06-08 08:19:10 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr12:121,823,131
INFO 2026-06-08 08:19:10 MarkDuplicates Tracking 158879 as yet unmatched pairs. 1858 records in RAM.
INFO 2026-06-08 08:19:12 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 2s. Last read position: chr12:124,343,184
INFO 2026-06-08 08:19:12 MarkDuplicates Tracking 158492 as yet unmatched pairs. 1470 records in RAM.
INFO 2026-06-08 08:19:14 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr12:132,570,524
INFO 2026-06-08 08:19:14 MarkDuplicates Tracking 157513 as yet unmatched pairs. 489 records in RAM.
INFO 2026-06-08 08:19:15 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr13:20,721,694
INFO 2026-06-08 08:19:15 MarkDuplicates Tracking 156729 as yet unmatched pairs. 3901 records in RAM.
INFO 2026-06-08 08:19:17 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr13:32,658,316
INFO 2026-06-08 08:19:17 MarkDuplicates Tracking 156156 as yet unmatched pairs. 3323 records in RAM.
INFO 2026-06-08 08:19:19 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr13:41,719,596
INFO 2026-06-08 08:19:19 MarkDuplicates Tracking 155569 as yet unmatched pairs. 2734 records in RAM.
INFO 2026-06-08 08:19:20 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr13:51,348,250
INFO 2026-06-08 08:19:20 MarkDuplicates Tracking 154988 as yet unmatched pairs. 2151 records in RAM.
INFO 2026-06-08 08:19:22 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr13:95,093,105
INFO 2026-06-08 08:19:22 MarkDuplicates Tracking 154491 as yet unmatched pairs. 1646 records in RAM.
INFO 2026-06-08 08:19:24 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr13:109,784,616
INFO 2026-06-08 08:19:24 MarkDuplicates Tracking 153745 as yet unmatched pairs. 899 records in RAM.
INFO 2026-06-08 08:19:26 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr13:113,623,195
INFO 2026-06-08 08:19:26 MarkDuplicates Tracking 153078 as yet unmatched pairs. 231 records in RAM.
INFO 2026-06-08 08:19:28 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr14:22,575,078
INFO 2026-06-08 08:19:28 MarkDuplicates Tracking 152451 as yet unmatched pairs. 7729 records in RAM.
INFO 2026-06-08 08:19:29 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr14:24,155,616
INFO 2026-06-08 08:19:29 MarkDuplicates Tracking 151663 as yet unmatched pairs. 6940 records in RAM.
INFO 2026-06-08 08:19:31 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr14:34,546,736
INFO 2026-06-08 08:19:31 MarkDuplicates Tracking 150927 as yet unmatched pairs. 6200 records in RAM.
INFO 2026-06-08 08:19:33 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,719
INFO 2026-06-08 08:19:33 MarkDuplicates Tracking 151207 as yet unmatched pairs. 6479 records in RAM.
INFO 2026-06-08 08:19:34 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr14:50,440,437
INFO 2026-06-08 08:19:34 MarkDuplicates Tracking 150310 as yet unmatched pairs. 5577 records in RAM.
INFO 2026-06-08 08:19:36 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 2s. Last read position: chr14:58,645,809
INFO 2026-06-08 08:19:36 MarkDuplicates Tracking 149651 as yet unmatched pairs. 4918 records in RAM.
INFO 2026-06-08 08:19:39 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 2s. Last read position: chr14:67,807,907
INFO 2026-06-08 08:19:39 MarkDuplicates Tracking 149104 as yet unmatched pairs. 4367 records in RAM.
INFO 2026-06-08 08:19:41 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr14:71,686,807
INFO 2026-06-08 08:19:41 MarkDuplicates Tracking 148520 as yet unmatched pairs. 3777 records in RAM.
INFO 2026-06-08 08:19:42 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr14:75,135,828
INFO 2026-06-08 08:19:42 MarkDuplicates Tracking 147851 as yet unmatched pairs. 3105 records in RAM.
INFO 2026-06-08 08:19:44 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr14:91,765,892
INFO 2026-06-08 08:19:44 MarkDuplicates Tracking 147191 as yet unmatched pairs. 2435 records in RAM.
INFO 2026-06-08 08:19:46 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr14:100,009,490
INFO 2026-06-08 08:19:46 MarkDuplicates Tracking 146662 as yet unmatched pairs. 1847 records in RAM.
INFO 2026-06-08 08:19:48 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr14:103,133,682
INFO 2026-06-08 08:19:48 MarkDuplicates Tracking 146071 as yet unmatched pairs. 1255 records in RAM.
INFO 2026-06-08 08:19:49 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr14:104,947,969
INFO 2026-06-08 08:19:49 MarkDuplicates Tracking 145402 as yet unmatched pairs. 586 records in RAM.
INFO 2026-06-08 08:19:51 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr15:25,008,541
INFO 2026-06-08 08:19:51 MarkDuplicates Tracking 144651 as yet unmatched pairs. 9791 records in RAM.
INFO 2026-06-08 08:19:53 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr15:32,731,864
INFO 2026-06-08 08:19:53 MarkDuplicates Tracking 144302 as yet unmatched pairs. 9435 records in RAM.
INFO 2026-06-08 08:19:55 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr15:39,583,680
INFO 2026-06-08 08:19:55 MarkDuplicates Tracking 143873 as yet unmatched pairs. 9003 records in RAM.
INFO 2026-06-08 08:19:56 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr15:40,854,469
INFO 2026-06-08 08:19:56 MarkDuplicates Tracking 143014 as yet unmatched pairs. 8144 records in RAM.
INFO 2026-06-08 08:19:58 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr15:43,420,524
INFO 2026-06-08 08:19:58 MarkDuplicates Tracking 142323 as yet unmatched pairs. 7448 records in RAM.
INFO 2026-06-08 08:20:00 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 2s. Last read position: chr15:45,178,215
INFO 2026-06-08 08:20:00 MarkDuplicates Tracking 141619 as yet unmatched pairs. 6744 records in RAM.
INFO 2026-06-08 08:20:02 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr15:50,481,487
INFO 2026-06-08 08:20:02 MarkDuplicates Tracking 141038 as yet unmatched pairs. 6163 records in RAM.
INFO 2026-06-08 08:20:04 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 2s. Last read position: chr15:58,771,497
INFO 2026-06-08 08:20:04 MarkDuplicates Tracking 140478 as yet unmatched pairs. 5588 records in RAM.
INFO 2026-06-08 08:20:06 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 2s. Last read position: chr15:63,678,315
INFO 2026-06-08 08:20:06 MarkDuplicates Tracking 139916 as yet unmatched pairs. 5026 records in RAM.
INFO 2026-06-08 08:20:08 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr15:68,303,813
INFO 2026-06-08 08:20:08 MarkDuplicates Tracking 139332 as yet unmatched pairs. 4434 records in RAM.
INFO 2026-06-08 08:20:10 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr15:73,273,948
INFO 2026-06-08 08:20:10 MarkDuplicates Tracking 138593 as yet unmatched pairs. 3695 records in RAM.
INFO 2026-06-08 08:20:12 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr15:74,044,260
INFO 2026-06-08 08:20:12 MarkDuplicates Tracking 137892 as yet unmatched pairs. 2990 records in RAM.
INFO 2026-06-08 08:20:13 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr15:77,179,279
INFO 2026-06-08 08:20:13 MarkDuplicates Tracking 136985 as yet unmatched pairs. 2079 records in RAM.
INFO 2026-06-08 08:20:15 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr15:84,354,328
INFO 2026-06-08 08:20:15 MarkDuplicates Tracking 136393 as yet unmatched pairs. 1485 records in RAM.
INFO 2026-06-08 08:20:16 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr15:89,333,649
INFO 2026-06-08 08:20:16 MarkDuplicates Tracking 135816 as yet unmatched pairs. 908 records in RAM.
INFO 2026-06-08 08:20:18 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr15:99,645,723
INFO 2026-06-08 08:20:18 MarkDuplicates Tracking 135107 as yet unmatched pairs. 188 records in RAM.
INFO 2026-06-08 08:20:20 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr16:634,888
INFO 2026-06-08 08:20:20 MarkDuplicates Tracking 134431 as yet unmatched pairs. 19035 records in RAM.
INFO 2026-06-08 08:20:22 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr16:1,668,087
INFO 2026-06-08 08:20:22 MarkDuplicates Tracking 133432 as yet unmatched pairs. 18036 records in RAM.
INFO 2026-06-08 08:20:24 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr16:2,109,475
INFO 2026-06-08 08:20:24 MarkDuplicates Tracking 132654 as yet unmatched pairs. 17258 records in RAM.
INFO 2026-06-08 08:20:25 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr16:2,762,059
INFO 2026-06-08 08:20:25 MarkDuplicates Tracking 132017 as yet unmatched pairs. 16620 records in RAM.
INFO 2026-06-08 08:20:28 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 2s. Last read position: chr16:3,022,825
INFO 2026-06-08 08:20:28 MarkDuplicates Tracking 131678 as yet unmatched pairs. 16281 records in RAM.
INFO 2026-06-08 08:20:30 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 2s. Last read position: chr16:4,360,946
INFO 2026-06-08 08:20:30 MarkDuplicates Tracking 130431 as yet unmatched pairs. 15029 records in RAM.
INFO 2026-06-08 08:20:32 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr16:11,024,849
INFO 2026-06-08 08:20:32 MarkDuplicates Tracking 129680 as yet unmatched pairs. 14274 records in RAM.
INFO 2026-06-08 08:20:33 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr16:14,882,598
INFO 2026-06-08 08:20:33 MarkDuplicates Tracking 129244 as yet unmatched pairs. 13837 records in RAM.
INFO 2026-06-08 08:20:35 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr16:15,598,868
INFO 2026-06-08 08:20:35 MarkDuplicates Tracking 128973 as yet unmatched pairs. 13566 records in RAM.
INFO 2026-06-08 08:20:36 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr16:16,357,437
INFO 2026-06-08 08:20:36 MarkDuplicates Tracking 128720 as yet unmatched pairs. 13312 records in RAM.
INFO 2026-06-08 08:20:38 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr16:18,382,003
INFO 2026-06-08 08:20:38 MarkDuplicates Tracking 128494 as yet unmatched pairs. 13086 records in RAM.
INFO 2026-06-08 08:20:39 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr16:19,507,687
INFO 2026-06-08 08:20:39 MarkDuplicates Tracking 127808 as yet unmatched pairs. 12400 records in RAM.
INFO 2026-06-08 08:20:40 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr16:21,415,069
INFO 2026-06-08 08:20:40 MarkDuplicates Tracking 127763 as yet unmatched pairs. 12354 records in RAM.
INFO 2026-06-08 08:20:42 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr16:21,837,680
INFO 2026-06-08 08:20:42 MarkDuplicates Tracking 127396 as yet unmatched pairs. 11986 records in RAM.
INFO 2026-06-08 08:20:43 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:22,527,955
INFO 2026-06-08 08:20:43 MarkDuplicates Tracking 127135 as yet unmatched pairs. 11725 records in RAM.
INFO 2026-06-08 08:20:45 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:23,424,932
INFO 2026-06-08 08:20:45 MarkDuplicates Tracking 126878 as yet unmatched pairs. 11468 records in RAM.
INFO 2026-06-08 08:20:46 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:28,538,795
INFO 2026-06-08 08:20:46 MarkDuplicates Tracking 126287 as yet unmatched pairs. 10876 records in RAM.
INFO 2026-06-08 08:20:48 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:29,384,183
INFO 2026-06-08 08:20:48 MarkDuplicates Tracking 125988 as yet unmatched pairs. 10577 records in RAM.
INFO 2026-06-08 08:20:49 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:29,528,441
INFO 2026-06-08 08:20:49 MarkDuplicates Tracking 125654 as yet unmatched pairs. 10243 records in RAM.
INFO 2026-06-08 08:20:51 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:30,118,399
INFO 2026-06-08 08:20:51 MarkDuplicates Tracking 124968 as yet unmatched pairs. 9557 records in RAM.
INFO 2026-06-08 08:20:52 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:30,429,881
INFO 2026-06-08 08:20:52 MarkDuplicates Tracking 124590 as yet unmatched pairs. 9177 records in RAM.
INFO 2026-06-08 08:20:54 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:30,979,686
INFO 2026-06-08 08:20:54 MarkDuplicates Tracking 123959 as yet unmatched pairs. 8542 records in RAM.
INFO 2026-06-08 08:20:56 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 2s. Last read position: chr16:34,160,773
INFO 2026-06-08 08:20:56 MarkDuplicates Tracking 123184 as yet unmatched pairs. 7766 records in RAM.
INFO 2026-06-08 08:20:58 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr16:53,686,454
INFO 2026-06-08 08:20:58 MarkDuplicates Tracking 122614 as yet unmatched pairs. 7191 records in RAM.
INFO 2026-06-08 08:21:00 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr16:57,051,538
INFO 2026-06-08 08:21:00 MarkDuplicates Tracking 121973 as yet unmatched pairs. 6549 records in RAM.
INFO 2026-06-08 08:21:02 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:64,982,144
INFO 2026-06-08 08:21:02 MarkDuplicates Tracking 121269 as yet unmatched pairs. 5845 records in RAM.
INFO 2026-06-08 08:21:04 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr16:67,538,491
INFO 2026-06-08 08:21:04 MarkDuplicates Tracking 120544 as yet unmatched pairs. 5120 records in RAM.
INFO 2026-06-08 08:21:05 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr16:68,695,308
INFO 2026-06-08 08:21:05 MarkDuplicates Tracking 120078 as yet unmatched pairs. 4652 records in RAM.
INFO 2026-06-08 08:21:07 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr16:70,474,852
INFO 2026-06-08 08:21:07 MarkDuplicates Tracking 119279 as yet unmatched pairs. 3852 records in RAM.
INFO 2026-06-08 08:21:08 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr16:72,959,684
INFO 2026-06-08 08:21:08 MarkDuplicates Tracking 118567 as yet unmatched pairs. 3138 records in RAM.
INFO 2026-06-08 08:21:10 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr16:81,543,329
INFO 2026-06-08 08:21:10 MarkDuplicates Tracking 117922 as yet unmatched pairs. 2493 records in RAM.
INFO 2026-06-08 08:21:12 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr16:87,702,151
INFO 2026-06-08 08:21:12 MarkDuplicates Tracking 117290 as yet unmatched pairs. 1852 records in RAM.
INFO 2026-06-08 08:21:13 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr16:88,732,526
INFO 2026-06-08 08:21:13 MarkDuplicates Tracking 116536 as yet unmatched pairs. 1097 records in RAM.
INFO 2026-06-08 08:21:15 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr16:89,907,452
INFO 2026-06-08 08:21:15 MarkDuplicates Tracking 115730 as yet unmatched pairs. 290 records in RAM.
INFO 2026-06-08 08:21:17 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr17:1,681,825
INFO 2026-06-08 08:21:17 MarkDuplicates Tracking 114926 as yet unmatched pairs. 36497 records in RAM.
INFO 2026-06-08 08:21:18 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr17:4,545,867
INFO 2026-06-08 08:21:18 MarkDuplicates Tracking 114202 as yet unmatched pairs. 35773 records in RAM.
INFO 2026-06-08 08:21:20 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr17:7,016,525
INFO 2026-06-08 08:21:20 MarkDuplicates Tracking 113584 as yet unmatched pairs. 35154 records in RAM.
INFO 2026-06-08 08:21:22 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr17:7,564,664
INFO 2026-06-08 08:21:22 MarkDuplicates Tracking 112861 as yet unmatched pairs. 34431 records in RAM.
INFO 2026-06-08 08:21:24 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 2s. Last read position: chr17:10,313,248
INFO 2026-06-08 08:21:24 MarkDuplicates Tracking 112324 as yet unmatched pairs. 33890 records in RAM.
INFO 2026-06-08 08:21:26 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr17:17,715,496
INFO 2026-06-08 08:21:26 MarkDuplicates Tracking 111562 as yet unmatched pairs. 33128 records in RAM.
INFO 2026-06-08 08:21:27 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr17:20,205,667
INFO 2026-06-08 08:21:27 MarkDuplicates Tracking 111012 as yet unmatched pairs. 32578 records in RAM.
INFO 2026-06-08 08:21:29 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr17:28,924,230
INFO 2026-06-08 08:21:29 MarkDuplicates Tracking 110361 as yet unmatched pairs. 31927 records in RAM.
INFO 2026-06-08 08:21:31 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 2s. Last read position: chr17:32,479,344
INFO 2026-06-08 08:21:31 MarkDuplicates Tracking 109810 as yet unmatched pairs. 31374 records in RAM.
INFO 2026-06-08 08:21:33 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr17:37,585,326
INFO 2026-06-08 08:21:33 MarkDuplicates Tracking 109358 as yet unmatched pairs. 30922 records in RAM.
INFO 2026-06-08 08:21:34 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr17:39,650,682
INFO 2026-06-08 08:21:34 MarkDuplicates Tracking 108869 as yet unmatched pairs. 30431 records in RAM.
INFO 2026-06-08 08:21:36 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr17:40,636,400
INFO 2026-06-08 08:21:36 MarkDuplicates Tracking 108079 as yet unmatched pairs. 29639 records in RAM.
INFO 2026-06-08 08:21:38 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr17:42,404,387
INFO 2026-06-08 08:21:38 MarkDuplicates Tracking 107343 as yet unmatched pairs. 28901 records in RAM.
INFO 2026-06-08 08:21:39 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr17:44,349,499
INFO 2026-06-08 08:21:39 MarkDuplicates Tracking 106941 as yet unmatched pairs. 28497 records in RAM.
INFO 2026-06-08 08:21:41 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr17:46,330,912
INFO 2026-06-08 08:21:41 MarkDuplicates Tracking 106075 as yet unmatched pairs. 27629 records in RAM.
INFO 2026-06-08 08:21:42 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr17:49,705,874
INFO 2026-06-08 08:21:42 MarkDuplicates Tracking 105477 as yet unmatched pairs. 27031 records in RAM.
INFO 2026-06-08 08:21:44 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,778
INFO 2026-06-08 08:21:44 MarkDuplicates Tracking 107142 as yet unmatched pairs. 28696 records in RAM.
INFO 2026-06-08 08:21:45 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,660
INFO 2026-06-08 08:21:45 MarkDuplicates Tracking 106176 as yet unmatched pairs. 27730 records in RAM.
INFO 2026-06-08 08:21:47 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,014
INFO 2026-06-08 08:21:47 MarkDuplicates Tracking 122244 as yet unmatched pairs. 43798 records in RAM.
INFO 2026-06-08 08:21:49 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,495
INFO 2026-06-08 08:21:49 MarkDuplicates Tracking 116278 as yet unmatched pairs. 37832 records in RAM.
INFO 2026-06-08 08:21:50 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,095
INFO 2026-06-08 08:21:50 MarkDuplicates Tracking 116960 as yet unmatched pairs. 38514 records in RAM.
INFO 2026-06-08 08:21:52 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,590
INFO 2026-06-08 08:21:52 MarkDuplicates Tracking 111326 as yet unmatched pairs. 32879 records in RAM.
INFO 2026-06-08 08:21:54 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,964
INFO 2026-06-08 08:21:54 MarkDuplicates Tracking 111268 as yet unmatched pairs. 32821 records in RAM.
INFO 2026-06-08 08:21:57 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,450
INFO 2026-06-08 08:21:57 MarkDuplicates Tracking 110025 as yet unmatched pairs. 31578 records in RAM.
INFO 2026-06-08 08:21:59 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,713
INFO 2026-06-08 08:21:59 MarkDuplicates Tracking 111817 as yet unmatched pairs. 33369 records in RAM.
INFO 2026-06-08 08:22:00 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,038
INFO 2026-06-08 08:22:00 MarkDuplicates Tracking 114909 as yet unmatched pairs. 36461 records in RAM.
INFO 2026-06-08 08:22:02 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,542
INFO 2026-06-08 08:22:02 MarkDuplicates Tracking 107975 as yet unmatched pairs. 29527 records in RAM.
INFO 2026-06-08 08:22:04 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,414
INFO 2026-06-08 08:22:04 MarkDuplicates Tracking 108161 as yet unmatched pairs. 29713 records in RAM.
INFO 2026-06-08 08:22:05 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,995
INFO 2026-06-08 08:22:05 MarkDuplicates Tracking 107983 as yet unmatched pairs. 29535 records in RAM.
INFO 2026-06-08 08:22:07 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,801
INFO 2026-06-08 08:22:07 MarkDuplicates Tracking 107015 as yet unmatched pairs. 28567 records in RAM.
INFO 2026-06-08 08:22:09 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,961
INFO 2026-06-08 08:22:09 MarkDuplicates Tracking 110155 as yet unmatched pairs. 31707 records in RAM.
INFO 2026-06-08 08:22:10 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,173
INFO 2026-06-08 08:22:10 MarkDuplicates Tracking 113594 as yet unmatched pairs. 35146 records in RAM.
INFO 2026-06-08 08:22:12 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,617
INFO 2026-06-08 08:22:12 MarkDuplicates Tracking 99632 as yet unmatched pairs. 21184 records in RAM.
INFO 2026-06-08 08:22:14 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,231
INFO 2026-06-08 08:22:14 MarkDuplicates Tracking 101479 as yet unmatched pairs. 23030 records in RAM.
INFO 2026-06-08 08:22:16 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,589
INFO 2026-06-08 08:22:16 MarkDuplicates Tracking 104091 as yet unmatched pairs. 25642 records in RAM.
INFO 2026-06-08 08:22:17 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,154
INFO 2026-06-08 08:22:17 MarkDuplicates Tracking 101652 as yet unmatched pairs. 23203 records in RAM.
INFO 2026-06-08 08:22:19 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,346
INFO 2026-06-08 08:22:19 MarkDuplicates Tracking 102470 as yet unmatched pairs. 24021 records in RAM.
INFO 2026-06-08 08:22:21 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,018
INFO 2026-06-08 08:22:21 MarkDuplicates Tracking 108348 as yet unmatched pairs. 29899 records in RAM.
INFO 2026-06-08 08:22:23 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,750
INFO 2026-06-08 08:22:23 MarkDuplicates Tracking 109398 as yet unmatched pairs. 30949 records in RAM.
INFO 2026-06-08 08:22:25 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,439
INFO 2026-06-08 08:22:25 MarkDuplicates Tracking 99728 as yet unmatched pairs. 21279 records in RAM.
INFO 2026-06-08 08:22:27 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,269
INFO 2026-06-08 08:22:27 MarkDuplicates Tracking 100659 as yet unmatched pairs. 22209 records in RAM.
INFO 2026-06-08 08:22:28 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,753
INFO 2026-06-08 08:22:28 MarkDuplicates Tracking 91391 as yet unmatched pairs. 12941 records in RAM.
INFO 2026-06-08 08:22:30 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 1s. Last read position: chr17:50,749,441
INFO 2026-06-08 08:22:30 MarkDuplicates Tracking 85128 as yet unmatched pairs. 6678 records in RAM.
INFO 2026-06-08 08:22:32 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 1s. Last read position: chr17:59,679,500
INFO 2026-06-08 08:22:32 MarkDuplicates Tracking 84877 as yet unmatched pairs. 6425 records in RAM.
INFO 2026-06-08 08:22:33 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 1s. Last read position: chr17:63,420,612
INFO 2026-06-08 08:22:33 MarkDuplicates Tracking 83898 as yet unmatched pairs. 5445 records in RAM.
INFO 2026-06-08 08:22:35 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 1s. Last read position: chr17:67,194,021
INFO 2026-06-08 08:22:35 MarkDuplicates Tracking 83382 as yet unmatched pairs. 4927 records in RAM.
INFO 2026-06-08 08:22:36 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 1s. Last read position: chr17:75,181,104
INFO 2026-06-08 08:22:36 MarkDuplicates Tracking 82704 as yet unmatched pairs. 4242 records in RAM.
INFO 2026-06-08 08:22:38 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 1s. Last read position: chr17:76,121,592
INFO 2026-06-08 08:22:38 MarkDuplicates Tracking 81875 as yet unmatched pairs. 3413 records in RAM.
INFO 2026-06-08 08:22:40 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 1s. Last read position: chr17:78,971,730
INFO 2026-06-08 08:22:40 MarkDuplicates Tracking 81218 as yet unmatched pairs. 2756 records in RAM.
INFO 2026-06-08 08:22:41 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 1s. Last read position: chr17:80,346,766
INFO 2026-06-08 08:22:41 MarkDuplicates Tracking 80678 as yet unmatched pairs. 2214 records in RAM.
INFO 2026-06-08 08:22:43 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 1s. Last read position: chr17:81,701,048
INFO 2026-06-08 08:22:43 MarkDuplicates Tracking 79664 as yet unmatched pairs. 1199 records in RAM.
INFO 2026-06-08 08:22:45 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 2s. Last read position: chr17:82,322,935
INFO 2026-06-08 08:22:45 MarkDuplicates Tracking 78759 as yet unmatched pairs. 294 records in RAM.
INFO 2026-06-08 08:22:47 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 2s. Last read position: chr18:8,718,434
INFO 2026-06-08 08:22:47 MarkDuplicates Tracking 78057 as yet unmatched pairs. 2763 records in RAM.
INFO 2026-06-08 08:22:49 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:16:10s. Time for last 1,000,000: 1s. Last read position: chr18:22,540,888
INFO 2026-06-08 08:22:49 MarkDuplicates Tracking 77417 as yet unmatched pairs. 2114 records in RAM.
INFO 2026-06-08 08:22:51 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 1s. Last read position: chr18:36,785,652
INFO 2026-06-08 08:22:51 MarkDuplicates Tracking 76820 as yet unmatched pairs. 1517 records in RAM.
INFO 2026-06-08 08:22:52 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 1s. Last read position: chr18:55,397,410
INFO 2026-06-08 08:22:52 MarkDuplicates Tracking 76335 as yet unmatched pairs. 1029 records in RAM.
INFO 2026-06-08 08:22:54 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:16:15s. Time for last 1,000,000: 1s. Last read position: chr18:75,201,475
INFO 2026-06-08 08:22:54 MarkDuplicates Tracking 75775 as yet unmatched pairs. 467 records in RAM.
INFO 2026-06-08 08:22:56 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 1s. Last read position: chr19:871,080
INFO 2026-06-08 08:22:56 MarkDuplicates Tracking 74929 as yet unmatched pairs. 26625 records in RAM.
INFO 2026-06-08 08:22:57 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 1s. Last read position: chr19:1,269,391
INFO 2026-06-08 08:22:57 MarkDuplicates Tracking 74145 as yet unmatched pairs. 25839 records in RAM.
INFO 2026-06-08 08:22:59 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:16:20s. Time for last 1,000,000: 1s. Last read position: chr19:2,111,691
INFO 2026-06-08 08:22:59 MarkDuplicates Tracking 72897 as yet unmatched pairs. 24590 records in RAM.
INFO 2026-06-08 08:23:01 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:16:22s. Time for last 1,000,000: 1s. Last read position: chr19:3,532,033
INFO 2026-06-08 08:23:01 MarkDuplicates Tracking 72063 as yet unmatched pairs. 23755 records in RAM.
INFO 2026-06-08 08:23:02 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:16:24s. Time for last 1,000,000: 1s. Last read position: chr19:4,817,828
INFO 2026-06-08 08:23:02 MarkDuplicates Tracking 71375 as yet unmatched pairs. 23065 records in RAM.
INFO 2026-06-08 08:23:04 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:16:25s. Time for last 1,000,000: 1s. Last read position: chr19:6,444,168
INFO 2026-06-08 08:23:04 MarkDuplicates Tracking 70620 as yet unmatched pairs. 22310 records in RAM.
INFO 2026-06-08 08:23:06 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:16:27s. Time for last 1,000,000: 1s. Last read position: chr19:7,611,758
INFO 2026-06-08 08:23:06 MarkDuplicates Tracking 69922 as yet unmatched pairs. 21606 records in RAM.
INFO 2026-06-08 08:23:07 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:16:29s. Time for last 1,000,000: 1s. Last read position: chr19:8,946,341
INFO 2026-06-08 08:23:07 MarkDuplicates Tracking 69287 as yet unmatched pairs. 20971 records in RAM.
INFO 2026-06-08 08:23:10 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 2s. Last read position: chr19:10,089,985
INFO 2026-06-08 08:23:10 MarkDuplicates Tracking 68725 as yet unmatched pairs. 20409 records in RAM.
INFO 2026-06-08 08:23:12 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:16:33s. Time for last 1,000,000: 2s. Last read position: chr19:10,927,809
INFO 2026-06-08 08:23:12 MarkDuplicates Tracking 67962 as yet unmatched pairs. 19646 records in RAM.
INFO 2026-06-08 08:23:13 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:16:35s. Time for last 1,000,000: 1s. Last read position: chr19:12,665,787
INFO 2026-06-08 08:23:13 MarkDuplicates Tracking 67500 as yet unmatched pairs. 19184 records in RAM.
INFO 2026-06-08 08:23:15 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:16:36s. Time for last 1,000,000: 1s. Last read position: chr19:13,798,145
INFO 2026-06-08 08:23:15 MarkDuplicates Tracking 66380 as yet unmatched pairs. 18063 records in RAM.
INFO 2026-06-08 08:23:17 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:16:38s. Time for last 1,000,000: 1s. Last read position: chr19:14,621,693
INFO 2026-06-08 08:23:17 MarkDuplicates Tracking 65699 as yet unmatched pairs. 17382 records in RAM.
INFO 2026-06-08 08:23:18 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:16:40s. Time for last 1,000,000: 1s. Last read position: chr19:15,355,156
INFO 2026-06-08 08:23:18 MarkDuplicates Tracking 64894 as yet unmatched pairs. 16575 records in RAM.
INFO 2026-06-08 08:23:20 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:16:42s. Time for last 1,000,000: 1s. Last read position: chr19:17,232,386
INFO 2026-06-08 08:23:20 MarkDuplicates Tracking 64205 as yet unmatched pairs. 15884 records in RAM.
INFO 2026-06-08 08:23:22 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 1s. Last read position: chr19:18,363,406
INFO 2026-06-08 08:23:22 MarkDuplicates Tracking 63287 as yet unmatched pairs. 14960 records in RAM.
INFO 2026-06-08 08:23:24 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 1s. Last read position: chr19:19,297,124
INFO 2026-06-08 08:23:24 MarkDuplicates Tracking 62392 as yet unmatched pairs. 14065 records in RAM.
INFO 2026-06-08 08:23:25 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:16:47s. Time for last 1,000,000: 1s. Last read position: chr19:29,681,806
INFO 2026-06-08 08:23:25 MarkDuplicates Tracking 61662 as yet unmatched pairs. 13333 records in RAM.
INFO 2026-06-08 08:23:27 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 1s. Last read position: chr19:35,014,204
INFO 2026-06-08 08:23:27 MarkDuplicates Tracking 60947 as yet unmatched pairs. 12618 records in RAM.
INFO 2026-06-08 08:23:29 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 1s. Last read position: chr19:35,267,275
INFO 2026-06-08 08:23:29 MarkDuplicates Tracking 61271 as yet unmatched pairs. 12942 records in RAM.
INFO 2026-06-08 08:23:30 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 1s. Last read position: chr19:35,720,500
INFO 2026-06-08 08:23:30 MarkDuplicates Tracking 58938 as yet unmatched pairs. 10607 records in RAM.
INFO 2026-06-08 08:23:32 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 1s. Last read position: chr19:36,573,140
INFO 2026-06-08 08:23:32 MarkDuplicates Tracking 57958 as yet unmatched pairs. 9627 records in RAM.
INFO 2026-06-08 08:23:34 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 1s. Last read position: chr19:39,137,564
INFO 2026-06-08 08:23:34 MarkDuplicates Tracking 57311 as yet unmatched pairs. 8980 records in RAM.
INFO 2026-06-08 08:23:36 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:16:58s. Time for last 1,000,000: 2s. Last read position: chr19:39,389,332
INFO 2026-06-08 08:23:36 MarkDuplicates Tracking 56906 as yet unmatched pairs. 8575 records in RAM.
INFO 2026-06-08 08:23:38 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 1s. Last read position: chr19:40,233,776
INFO 2026-06-08 08:23:38 MarkDuplicates Tracking 56464 as yet unmatched pairs. 8130 records in RAM.
INFO 2026-06-08 08:23:39 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 1s. Last read position: chr19:41,956,833
INFO 2026-06-08 08:23:39 MarkDuplicates Tracking 55572 as yet unmatched pairs. 7238 records in RAM.
INFO 2026-06-08 08:23:41 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 1s. Last read position: chr19:43,494,759
INFO 2026-06-08 08:23:41 MarkDuplicates Tracking 54718 as yet unmatched pairs. 6366 records in RAM.
INFO 2026-06-08 08:23:43 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:17:04s. Time for last 1,000,000: 1s. Last read position: chr19:45,409,403
INFO 2026-06-08 08:23:43 MarkDuplicates Tracking 53820 as yet unmatched pairs. 5460 records in RAM.
INFO 2026-06-08 08:23:44 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 1s. Last read position: chr19:47,226,571
INFO 2026-06-08 08:23:44 MarkDuplicates Tracking 52931 as yet unmatched pairs. 4567 records in RAM.
INFO 2026-06-08 08:23:46 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:17:07s. Time for last 1,000,000: 1s. Last read position: chr19:48,982,828
INFO 2026-06-08 08:23:46 MarkDuplicates Tracking 52116 as yet unmatched pairs. 3752 records in RAM.
INFO 2026-06-08 08:23:47 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 1s. Last read position: chr19:49,835,537
INFO 2026-06-08 08:23:47 MarkDuplicates Tracking 51344 as yet unmatched pairs. 2980 records in RAM.
INFO 2026-06-08 08:23:49 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:17:10s. Time for last 1,000,000: 1s. Last read position: chr19:52,384,788
INFO 2026-06-08 08:23:49 MarkDuplicates Tracking 50488 as yet unmatched pairs. 2122 records in RAM.
INFO 2026-06-08 08:23:51 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 1s. Last read position: chr19:54,465,344
INFO 2026-06-08 08:23:51 MarkDuplicates Tracking 49789 as yet unmatched pairs. 1422 records in RAM.
INFO 2026-06-08 08:23:52 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr19:57,328,987
INFO 2026-06-08 08:23:52 MarkDuplicates Tracking 48979 as yet unmatched pairs. 612 records in RAM.
INFO 2026-06-08 08:23:54 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:17:15s. Time for last 1,000,000: 1s. Last read position: chr20:492,345
INFO 2026-06-08 08:23:54 MarkDuplicates Tracking 48317 as yet unmatched pairs. 8076 records in RAM.
INFO 2026-06-08 08:23:56 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 1s. Last read position: chr20:3,706,408
INFO 2026-06-08 08:23:56 MarkDuplicates Tracking 47807 as yet unmatched pairs. 7566 records in RAM.
INFO 2026-06-08 08:23:57 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 1s. Last read position: chr20:17,624,634
INFO 2026-06-08 08:23:57 MarkDuplicates Tracking 47127 as yet unmatched pairs. 6883 records in RAM.
INFO 2026-06-08 08:23:59 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 1s. Last read position: chr20:25,274,655
INFO 2026-06-08 08:23:59 MarkDuplicates Tracking 46388 as yet unmatched pairs. 6142 records in RAM.
INFO 2026-06-08 08:24:01 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr20:34,743,051
INFO 2026-06-08 08:24:01 MarkDuplicates Tracking 45818 as yet unmatched pairs. 5570 records in RAM.
INFO 2026-06-08 08:24:03 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr20:36,793,860
INFO 2026-06-08 08:24:03 MarkDuplicates Tracking 45100 as yet unmatched pairs. 4850 records in RAM.
INFO 2026-06-08 08:24:04 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 1s. Last read position: chr20:43,692,159
INFO 2026-06-08 08:24:04 MarkDuplicates Tracking 44337 as yet unmatched pairs. 4086 records in RAM.
INFO 2026-06-08 08:24:06 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr20:46,371,391
INFO 2026-06-08 08:24:06 MarkDuplicates Tracking 43611 as yet unmatched pairs. 3359 records in RAM.
INFO 2026-06-08 08:24:08 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr20:50,891,884
INFO 2026-06-08 08:24:08 MarkDuplicates Tracking 42966 as yet unmatched pairs. 2712 records in RAM.
INFO 2026-06-08 08:24:09 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr20:58,898,941
INFO 2026-06-08 08:24:09 MarkDuplicates Tracking 42210 as yet unmatched pairs. 1954 records in RAM.
INFO 2026-06-08 08:24:11 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 1s. Last read position: chr20:62,880,796
INFO 2026-06-08 08:24:11 MarkDuplicates Tracking 41249 as yet unmatched pairs. 989 records in RAM.
INFO 2026-06-08 08:24:13 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 1s. Last read position: chr20:63,963,095
INFO 2026-06-08 08:24:13 MarkDuplicates Tracking 40379 as yet unmatched pairs. 119 records in RAM.
INFO 2026-06-08 08:24:14 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr21:8,213,192
INFO 2026-06-08 08:24:14 MarkDuplicates Tracking 40100 as yet unmatched pairs. 11948 records in RAM.
INFO 2026-06-08 08:24:15 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,107
INFO 2026-06-08 08:24:15 MarkDuplicates Tracking 39195 as yet unmatched pairs. 11027 records in RAM.
INFO 2026-06-08 08:24:16 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr21:8,217,322
INFO 2026-06-08 08:24:16 MarkDuplicates Tracking 38342 as yet unmatched pairs. 10173 records in RAM.
INFO 2026-06-08 08:24:18 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,283
INFO 2026-06-08 08:24:18 MarkDuplicates Tracking 37700 as yet unmatched pairs. 9530 records in RAM.
INFO 2026-06-08 08:24:19 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 0s. Last read position: chr21:8,390,110
INFO 2026-06-08 08:24:19 MarkDuplicates Tracking 37540 as yet unmatched pairs. 9368 records in RAM.
INFO 2026-06-08 08:24:20 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr21:8,398,937
INFO 2026-06-08 08:24:20 MarkDuplicates Tracking 37158 as yet unmatched pairs. 8984 records in RAM.
INFO 2026-06-08 08:24:21 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,305
INFO 2026-06-08 08:24:21 MarkDuplicates Tracking 36617 as yet unmatched pairs. 8439 records in RAM.
INFO 2026-06-08 08:24:23 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr21:8,440,781
INFO 2026-06-08 08:24:23 MarkDuplicates Tracking 36076 as yet unmatched pairs. 7895 records in RAM.
INFO 2026-06-08 08:24:24 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,329
INFO 2026-06-08 08:24:24 MarkDuplicates Tracking 35031 as yet unmatched pairs. 6849 records in RAM.
INFO 2026-06-08 08:24:26 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,559
INFO 2026-06-08 08:24:26 MarkDuplicates Tracking 36866 as yet unmatched pairs. 8684 records in RAM.
INFO 2026-06-08 08:24:27 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr21:25,881,652
INFO 2026-06-08 08:24:27 MarkDuplicates Tracking 33758 as yet unmatched pairs. 5576 records in RAM.
INFO 2026-06-08 08:24:28 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chr21:33,349,415
INFO 2026-06-08 08:24:28 MarkDuplicates Tracking 33079 as yet unmatched pairs. 4897 records in RAM.
INFO 2026-06-08 08:26:36 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 127s. Last read position: chr21:36,071,091
INFO 2026-06-08 08:26:36 MarkDuplicates Tracking 32382 as yet unmatched pairs. 4200 records in RAM.
INFO 2026-06-08 08:26:38 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr21:41,451,182
INFO 2026-06-08 08:26:38 MarkDuplicates Tracking 32174 as yet unmatched pairs. 3991 records in RAM.
INFO 2026-06-08 08:26:40 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr21:44,851,328
INFO 2026-06-08 08:26:40 MarkDuplicates Tracking 31540 as yet unmatched pairs. 3357 records in RAM.
INFO 2026-06-08 08:26:41 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr21:45,986,948
INFO 2026-06-08 08:26:41 MarkDuplicates Tracking 30719 as yet unmatched pairs. 2536 records in RAM.
INFO 2026-06-08 08:26:43 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr21:46,003,938
INFO 2026-06-08 08:26:43 MarkDuplicates Tracking 29925 as yet unmatched pairs. 1742 records in RAM.
INFO 2026-06-08 08:26:45 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr21:46,132,032
INFO 2026-06-08 08:26:45 MarkDuplicates Tracking 29267 as yet unmatched pairs. 1084 records in RAM.
INFO 2026-06-08 08:26:46 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr22:19,038,984
INFO 2026-06-08 08:26:46 MarkDuplicates Tracking 28039 as yet unmatched pairs. 8367 records in RAM.
INFO 2026-06-08 08:26:48 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr22:21,957,098
INFO 2026-06-08 08:26:48 MarkDuplicates Tracking 27250 as yet unmatched pairs. 7577 records in RAM.
INFO 2026-06-08 08:26:49 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr22:23,784,061
INFO 2026-06-08 08:26:49 MarkDuplicates Tracking 26088 as yet unmatched pairs. 6415 records in RAM.
INFO 2026-06-08 08:26:51 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr22:29,272,417
INFO 2026-06-08 08:26:51 MarkDuplicates Tracking 25846 as yet unmatched pairs. 6173 records in RAM.
INFO 2026-06-08 08:26:53 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr22:31,262,047
INFO 2026-06-08 08:26:53 MarkDuplicates Tracking 24686 as yet unmatched pairs. 5013 records in RAM.
INFO 2026-06-08 08:26:54 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr22:36,289,169
INFO 2026-06-08 08:26:54 MarkDuplicates Tracking 24100 as yet unmatched pairs. 4427 records in RAM.
INFO 2026-06-08 08:26:56 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr22:37,816,312
INFO 2026-06-08 08:26:56 MarkDuplicates Tracking 23297 as yet unmatched pairs. 3623 records in RAM.
INFO 2026-06-08 08:26:58 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 2s. Last read position: chr22:39,522,351
INFO 2026-06-08 08:26:58 MarkDuplicates Tracking 22666 as yet unmatched pairs. 2992 records in RAM.
INFO 2026-06-08 08:27:00 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 2s. Last read position: chr22:42,213,155
INFO 2026-06-08 08:27:00 MarkDuplicates Tracking 21952 as yet unmatched pairs. 2277 records in RAM.
INFO 2026-06-08 08:27:02 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr22:46,690,087
INFO 2026-06-08 08:27:02 MarkDuplicates Tracking 21186 as yet unmatched pairs. 1511 records in RAM.
INFO 2026-06-08 08:27:04 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr22:50,525,818
INFO 2026-06-08 08:27:04 MarkDuplicates Tracking 21805 as yet unmatched pairs. 2130 records in RAM.
INFO 2026-06-08 08:27:06 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 2s. Last read position: chrX:2,700,883
INFO 2026-06-08 08:27:06 MarkDuplicates Tracking 19729 as yet unmatched pairs. 9631 records in RAM.
INFO 2026-06-08 08:27:08 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chrX:3,323,485
INFO 2026-06-08 08:27:08 MarkDuplicates Tracking 18825 as yet unmatched pairs. 8727 records in RAM.
INFO 2026-06-08 08:27:09 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chrX:17,801,484
INFO 2026-06-08 08:27:09 MarkDuplicates Tracking 18239 as yet unmatched pairs. 8090 records in RAM.
INFO 2026-06-08 08:27:11 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chrX:40,591,310
INFO 2026-06-08 08:27:11 MarkDuplicates Tracking 17716 as yet unmatched pairs. 7567 records in RAM.
INFO 2026-06-08 08:27:12 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chrX:47,586,679
INFO 2026-06-08 08:27:12 MarkDuplicates Tracking 16961 as yet unmatched pairs. 6809 records in RAM.
INFO 2026-06-08 08:27:14 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chrX:51,896,452
INFO 2026-06-08 08:27:14 MarkDuplicates Tracking 16436 as yet unmatched pairs. 6284 records in RAM.
INFO 2026-06-08 08:27:15 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chrX:54,440,714
INFO 2026-06-08 08:27:15 MarkDuplicates Tracking 15568 as yet unmatched pairs. 5415 records in RAM.
INFO 2026-06-08 08:27:17 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chrX:71,124,342
INFO 2026-06-08 08:27:17 MarkDuplicates Tracking 14952 as yet unmatched pairs. 4796 records in RAM.
INFO 2026-06-08 08:27:18 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chrX:77,599,745
INFO 2026-06-08 08:27:18 MarkDuplicates Tracking 14714 as yet unmatched pairs. 4558 records in RAM.
INFO 2026-06-08 08:27:20 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chrX:103,676,429
INFO 2026-06-08 08:27:20 MarkDuplicates Tracking 14133 as yet unmatched pairs. 3976 records in RAM.
INFO 2026-06-08 08:27:21 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chrX:123,633,954
INFO 2026-06-08 08:27:21 MarkDuplicates Tracking 13360 as yet unmatched pairs. 3203 records in RAM.
INFO 2026-06-08 08:27:23 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chrX:149,490,340
INFO 2026-06-08 08:27:23 MarkDuplicates Tracking 12989 as yet unmatched pairs. 2830 records in RAM.
INFO 2026-06-08 08:27:25 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chrX:153,950,343
INFO 2026-06-08 08:27:25 MarkDuplicates Tracking 12273 as yet unmatched pairs. 2113 records in RAM.
INFO 2026-06-08 08:27:27 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 2s. Last read position: chrX:154,359,543
INFO 2026-06-08 08:27:27 MarkDuplicates Tracking 11816 as yet unmatched pairs. 1656 records in RAM.
INFO 2026-06-08 08:27:29 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 2s. Last read position: chrX:154,442,199
INFO 2026-06-08 08:27:29 MarkDuplicates Tracking 10780 as yet unmatched pairs. 619 records in RAM.
INFO 2026-06-08 08:27:31 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chrM:6,420
INFO 2026-06-08 08:27:31 MarkDuplicates Tracking 10096 as yet unmatched pairs. 196 records in RAM.
INFO 2026-06-08 08:27:32 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: GL000220.1:111,331
INFO 2026-06-08 08:27:32 MarkDuplicates Tracking 9790 as yet unmatched pairs. 4075 records in RAM.
INFO 2026-06-08 08:27:33 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,489
INFO 2026-06-08 08:27:33 MarkDuplicates Tracking 10089 as yet unmatched pairs. 4374 records in RAM.
INFO 2026-06-08 08:27:34 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 0s. Last read position: GL000220.1:116,725
INFO 2026-06-08 08:27:34 MarkDuplicates Tracking 6122 as yet unmatched pairs. 406 records in RAM.
INFO 2026-06-08 08:27:35 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: GL000220.1:156,673
INFO 2026-06-08 08:27:35 MarkDuplicates Tracking 6135 as yet unmatched pairs. 418 records in RAM.
INFO 2026-06-08 08:27:36 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 0s. Last read position: GL000220.1:159,480
INFO 2026-06-08 08:27:36 MarkDuplicates Tracking 5927 as yet unmatched pairs. 210 records in RAM.
INFO 2026-06-08 08:27:37 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: GL000220.1:160,724
INFO 2026-06-08 08:27:37 MarkDuplicates Tracking 5722 as yet unmatched pairs. 5 records in RAM.
INFO 2026-06-08 08:27:38 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: KI270733.1:128,211
INFO 2026-06-08 08:27:38 MarkDuplicates Tracking 5638 as yet unmatched pairs. 5624 records in RAM.
INFO 2026-06-08 08:27:39 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: KI270733.1:132,316
INFO 2026-06-08 08:27:39 MarkDuplicates Tracking 4060 as yet unmatched pairs. 4046 records in RAM.
INFO 2026-06-08 08:27:40 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,458
INFO 2026-06-08 08:27:40 MarkDuplicates Tracking 1647 as yet unmatched pairs. 1633 records in RAM.
INFO 2026-06-08 08:27:42 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: KI270733.1:172,227
INFO 2026-06-08 08:27:42 MarkDuplicates Tracking 853 as yet unmatched pairs. 839 records in RAM.
INFO 2026-06-08 08:27:43 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,711
INFO 2026-06-08 08:27:43 MarkDuplicates Tracking 111 as yet unmatched pairs. 97 records in RAM.
INFO 2026-06-08 08:27:44 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,451
INFO 2026-06-08 08:27:44 MarkDuplicates Tracking 24 as yet unmatched pairs. 10 records in RAM.
INFO 2026-06-08 08:27:44 MarkDuplicates Read 560620729 records. 0 pairs never matched.
INFO 2026-06-08 08:27:56 MarkDuplicates After buildSortedReadEndLists freeMemory: 204132816; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:27:56 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:28:02 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:28:02 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1579
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,488
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1627
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,863
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 2506
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,584
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,728
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1289
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,715
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1146
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,158
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1059
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,405
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1200
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,882
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1360
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,696
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1568
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,091
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1203
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,340
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1169
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,005
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1351
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,350
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1060
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,954
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1504
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,718
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1330
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,535
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 1014
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,982
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 1086
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,850
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 1060
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,604
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 1413
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,811
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 1013
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,578
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 1070
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,121
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 2101
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,374
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,010
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 1190
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,000
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 1319
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,422
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 1278
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,660
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 1440
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,941
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 1020
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,639
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 1007
INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,653
INFO 2026-06-08 08:28:18 OpticalDuplicateFinder Large duplicate set. size = 1106
INFO 2026-06-08 08:28:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,638
INFO 2026-06-08 08:28:19 OpticalDuplicateFinder Large duplicate set. size = 1007
INFO 2026-06-08 08:28:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,665
INFO 2026-06-08 08:28:19 OpticalDuplicateFinder Large duplicate set. size = 1396
INFO 2026-06-08 08:28:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,226
INFO 2026-06-08 08:28:19 OpticalDuplicateFinder Large duplicate set. size = 1131
INFO 2026-06-08 08:28:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,824
INFO 2026-06-08 08:28:20 OpticalDuplicateFinder Large duplicate set. size = 1061
INFO 2026-06-08 08:28:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,519
INFO 2026-06-08 08:28:20 OpticalDuplicateFinder Large duplicate set. size = 1023
INFO 2026-06-08 08:28:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,320
INFO 2026-06-08 08:28:20 OpticalDuplicateFinder Large duplicate set. size = 1420
INFO 2026-06-08 08:28:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,803
INFO 2026-06-08 08:28:20 OpticalDuplicateFinder Large duplicate set. size = 1492
INFO 2026-06-08 08:28:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,896
INFO 2026-06-08 08:28:20 OpticalDuplicateFinder Large duplicate set. size = 1126
INFO 2026-06-08 08:28:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,173
INFO 2026-06-08 08:28:20 OpticalDuplicateFinder Large duplicate set. size = 1551
INFO 2026-06-08 08:28:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,589
INFO 2026-06-08 08:28:20 OpticalDuplicateFinder Large duplicate set. size = 1204
INFO 2026-06-08 08:28:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,511
INFO 2026-06-08 08:28:20 OpticalDuplicateFinder Large duplicate set. size = 1860
INFO 2026-06-08 08:28:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,968
INFO 2026-06-08 08:28:20 OpticalDuplicateFinder Large duplicate set. size = 1097
INFO 2026-06-08 08:28:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,825
INFO 2026-06-08 08:28:20 OpticalDuplicateFinder Large duplicate set. size = 1312
INFO 2026-06-08 08:28:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,991
INFO 2026-06-08 08:28:21 OpticalDuplicateFinder Large duplicate set. size = 1167
INFO 2026-06-08 08:28:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,731
INFO 2026-06-08 08:28:21 OpticalDuplicateFinder Large duplicate set. size = 1204
INFO 2026-06-08 08:28:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,618
INFO 2026-06-08 08:28:21 OpticalDuplicateFinder Large duplicate set. size = 1107
INFO 2026-06-08 08:28:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,031
INFO 2026-06-08 08:28:21 OpticalDuplicateFinder Large duplicate set. size = 1122
INFO 2026-06-08 08:28:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,426
INFO 2026-06-08 08:28:21 OpticalDuplicateFinder Large duplicate set. size = 1317
INFO 2026-06-08 08:28:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,452
INFO 2026-06-08 08:28:21 OpticalDuplicateFinder Large duplicate set. size = 1025
INFO 2026-06-08 08:28:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,315
INFO 2026-06-08 08:28:30 OpticalDuplicateFinder Large duplicate set. size = 1023
INFO 2026-06-08 08:28:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,289
INFO 2026-06-08 08:29:01 OpticalDuplicateFinder Large duplicate set. size = 1309
INFO 2026-06-08 08:29:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,197
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1339
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,505
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 2203
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,548
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,294
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1035
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,097
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1049
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,745
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1875
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,494
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 3393
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,758
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,631
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,188
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1259
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,885
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1161
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,451
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1405
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,034
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1093
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,621
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1135
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,399
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1361
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,130
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1005
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,931
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1294
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,980
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1006
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,208
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1194
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,591
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1040
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,160
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1321
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,480
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1276
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,652
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1028
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,600
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1113
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,468
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1082
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,803
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1012
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,924
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1379
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,696
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1369
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,325
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1507
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,306
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1067
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,699
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1662
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,132
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1144
INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,505
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1601
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,504
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1940
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,753
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1090
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,653
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1113
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,676
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1011
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,522
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1291
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,110
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1052
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,598
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1229
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,419
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1988
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,918
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 2049
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,584
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,493
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 2470
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,528
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,846
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1663
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,804
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1271
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,104
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1072
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,252
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1706
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,676
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1023
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,426
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1453
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,262
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1749
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,726
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1168
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,225
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1388
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,796
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1534
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,870
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1950
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,621
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1231
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,687
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1061
INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,110
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1328
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,215
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1454
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,078
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1942
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,990
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1040
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,031
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,439
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1022
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,935
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1449
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,878
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1026
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,017
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1188
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,329
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1014
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,235
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1030
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,923
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1128
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,999
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1004
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,579
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1037
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,463
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1046
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,145
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1070
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,636
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1289
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,286
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1110
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,650
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1819
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,041
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1130
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,466
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1595
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,982
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1099
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,995
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1108
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,155
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1361
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,373
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1270
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,911
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1164
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,440
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 2491
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,874
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,689
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1488
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,399
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1395
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,309
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1214
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,627
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1031
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,882
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1154
INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,551
INFO 2026-06-08 08:29:19 OpticalDuplicateFinder Large duplicate set. size = 1037
INFO 2026-06-08 08:29:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,880
INFO 2026-06-08 08:29:19 OpticalDuplicateFinder Large duplicate set. size = 1155
INFO 2026-06-08 08:29:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,743
INFO 2026-06-08 08:29:19 OpticalDuplicateFinder Large duplicate set. size = 1294
INFO 2026-06-08 08:29:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,848
INFO 2026-06-08 08:29:19 OpticalDuplicateFinder Large duplicate set. size = 1013
INFO 2026-06-08 08:29:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,079
INFO 2026-06-08 08:29:19 OpticalDuplicateFinder Large duplicate set. size = 1083
INFO 2026-06-08 08:29:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,326
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1191
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,489
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 2282
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,923
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,108
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1423
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,261
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 2137
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,122
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,970
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 2107
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,939
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,128
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1220
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,674
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1011
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,504
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1287
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,964
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1034
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,103
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1088
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,610
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1168
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,930
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1211
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,803
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1238
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,205
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1051
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,593
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1023
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,563
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1134
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,575
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1781
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,988
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1606
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,389
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1663
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,748
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1107
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,655
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1285
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,793
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1319
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,549
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1158
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,525
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1033
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,597
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1086
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,418
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1615
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,227
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1080
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,993
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1180
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,955
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1539
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,427
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1104
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,775
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 2556
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,295
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,695
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1957
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,072
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1107
INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,411
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1031
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,277
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1098
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,530
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1285
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,468
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1123
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,318
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1179
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,480
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1255
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,347
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1216
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,114
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 2130
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,961
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,646
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1094
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,938
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1490
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,128
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1063
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,642
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1262
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,746
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1056
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,744
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1378
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,877
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1066
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,938
INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1796
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,559
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1377
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,216
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1689
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,932
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 2042
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,429
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,288
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1583
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,160
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1987
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,797
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 2305
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,424
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,449
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1295
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,577
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1057
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,097
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1038
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,996
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1536
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,203
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1939
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,852
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1402
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,085
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1094
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,082
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1607
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,719
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 2243
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,506
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,338
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1024
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,972
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 2259
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,049
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,372
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1155
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,714
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1020
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,071
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1541
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,332
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1203
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,415
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 3203
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,431
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,458
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,863
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1103
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,218
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 4451
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,349
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,683
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,850
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,824
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1188
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,704
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1421
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,300
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1356
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,836
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1092
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,289
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1061
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,063
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1094
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,793
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1593
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,901
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 2233
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,952
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,209
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1155
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,498
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1873
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,963
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1115
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,538
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1519
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,700
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 2329
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,962
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,483
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1183
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,036
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1296
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,702
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1131
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,842
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1203
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,367
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1283
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,072
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 2910
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,628
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,374
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1123
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,896
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1103
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,546
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 3526
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,724
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,280
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,486
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1234
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,157
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1366
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,567
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1626
INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,785
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1215
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,222
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1025
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,378
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1062
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,619
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1646
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,194
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1020
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,120
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1165
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,213
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1103
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,179
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1176
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,505
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1023
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,614
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1320
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,664
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1077
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,544
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1115
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,115
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1356
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,433
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1131
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,673
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1335
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,155
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1098
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,601
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1299
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,673
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1447
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,412
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 2193
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,552
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,221
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 5107
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,186
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,069
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,827
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,387
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 5,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,975
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 2343
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,281
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,471
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1451
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,168
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1360
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,320
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1179
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,721
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1143
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,020
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1230
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,802
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1615
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,230
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1296
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,138
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1395
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,800
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1440
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,032
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1252
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,507
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1225
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,753
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1228
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,696
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1137
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,640
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1481
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,815
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1062
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,273
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1161
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,917
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1286
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,357
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1607
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,737
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1440
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,241
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1048
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,092
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1337
INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,955
INFO 2026-06-08 08:29:24 OpticalDuplicateFinder Large duplicate set. size = 1366
INFO 2026-06-08 08:29:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,628
INFO 2026-06-08 08:29:24 OpticalDuplicateFinder Large duplicate set. size = 1530
INFO 2026-06-08 08:29:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,100
INFO 2026-06-08 08:29:24 OpticalDuplicateFinder Large duplicate set. size = 1120
INFO 2026-06-08 08:29:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,840
INFO 2026-06-08 08:29:24 OpticalDuplicateFinder Large duplicate set. size = 1017
INFO 2026-06-08 08:29:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,973
INFO 2026-06-08 08:29:24 OpticalDuplicateFinder Large duplicate set. size = 1120
INFO 2026-06-08 08:29:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,485
INFO 2026-06-08 08:29:24 OpticalDuplicateFinder Large duplicate set. size = 1428
INFO 2026-06-08 08:29:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,761
INFO 2026-06-08 08:29:24 OpticalDuplicateFinder Large duplicate set. size = 1298
INFO 2026-06-08 08:29:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,407
INFO 2026-06-08 08:29:24 OpticalDuplicateFinder Large duplicate set. size = 1172
INFO 2026-06-08 08:29:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,110
INFO 2026-06-08 08:29:24 OpticalDuplicateFinder Large duplicate set. size = 1209
INFO 2026-06-08 08:29:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,220
INFO 2026-06-08 08:29:24 OpticalDuplicateFinder Large duplicate set. size = 1313
INFO 2026-06-08 08:29:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,389
INFO 2026-06-08 08:29:24 OpticalDuplicateFinder Large duplicate set. size = 1025
INFO 2026-06-08 08:29:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,925
INFO 2026-06-08 08:29:33 OpticalDuplicateFinder Large duplicate set. size = 1254
INFO 2026-06-08 08:29:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,006
INFO 2026-06-08 08:29:33 OpticalDuplicateFinder Large duplicate set. size = 1619
INFO 2026-06-08 08:29:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,689
INFO 2026-06-08 08:29:33 OpticalDuplicateFinder Large duplicate set. size = 1060
INFO 2026-06-08 08:29:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,621
INFO 2026-06-08 08:29:33 OpticalDuplicateFinder Large duplicate set. size = 1202
INFO 2026-06-08 08:29:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,157
INFO 2026-06-08 08:29:33 OpticalDuplicateFinder Large duplicate set. size = 1063
INFO 2026-06-08 08:29:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,624
INFO 2026-06-08 08:29:33 OpticalDuplicateFinder Large duplicate set. size = 1315
INFO 2026-06-08 08:29:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,484
INFO 2026-06-08 08:29:33 OpticalDuplicateFinder Large duplicate set. size = 1262
INFO 2026-06-08 08:29:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,927
INFO 2026-06-08 08:29:33 OpticalDuplicateFinder Large duplicate set. size = 1340
INFO 2026-06-08 08:29:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,568
INFO 2026-06-08 08:29:33 OpticalDuplicateFinder Large duplicate set. size = 1024
INFO 2026-06-08 08:29:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,707
INFO 2026-06-08 08:29:33 OpticalDuplicateFinder Large duplicate set. size = 1272
INFO 2026-06-08 08:29:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,254
INFO 2026-06-08 08:29:39 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:29:39 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:30:37 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:30:41 MarkDuplicates After generateDuplicateIndexes freeMemory: 203833864; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:30:41 MarkDuplicates Marking 348643788 records as duplicates.
INFO 2026-06-08 08:30:41 MarkDuplicates Found 15834956 optical duplicate clusters.
INFO 2026-06-08 08:30:41 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:30:57 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:15s. Time for last 10,000,000: 15s. Last read position: chr1:25,809,140
INFO 2026-06-08 08:31:13 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:31s. Time for last 10,000,000: 15s. Last read position: chr1:65,854,766
INFO 2026-06-08 08:31:28 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:46s. Time for last 10,000,000: 15s. Last read position: chr1:147,166,581
INFO 2026-06-08 08:31:43 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:02s. Time for last 10,000,000: 15s. Last read position: chr1:156,978,206
INFO 2026-06-08 08:31:59 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:18s. Time for last 10,000,000: 15s. Last read position: chr1:211,978,492
INFO 2026-06-08 08:32:15 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:33s. Time for last 10,000,000: 15s. Last read position: chr2:28,800,157
INFO 2026-06-08 08:32:31 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:49s. Time for last 10,000,000: 15s. Last read position: chr2:108,719,569
INFO 2026-06-08 08:32:46 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:04s. Time for last 10,000,000: 15s. Last read position: chr2:200,477,875
INFO 2026-06-08 08:33:01 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:19s. Time for last 10,000,000: 15s. Last read position: chr2:215,391,709
INFO 2026-06-08 08:33:16 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:35s. Time for last 10,000,000: 15s. Last read position: chr2:226,798,238
INFO 2026-06-08 08:33:32 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:51s. Time for last 10,000,000: 16s. Last read position: chr3:46,439,303
INFO 2026-06-08 08:33:48 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:07s. Time for last 10,000,000: 15s. Last read position: chr3:120,328,747
INFO 2026-06-08 08:34:05 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:23s. Time for last 10,000,000: 16s. Last read position: chr3:188,609,390
INFO 2026-06-08 08:34:21 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:39s. Time for last 10,000,000: 16s. Last read position: chr4:103,149,204
INFO 2026-06-08 08:34:38 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:56s. Time for last 10,000,000: 16s. Last read position: chr5:56,815,792
INFO 2026-06-08 08:34:53 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:12s. Time for last 10,000,000: 15s. Last read position: chr5:150,117,740
INFO 2026-06-08 08:35:09 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:27s. Time for last 10,000,000: 15s. Last read position: chr6:22,042,966
INFO 2026-06-08 08:35:24 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:43s. Time for last 10,000,000: 15s. Last read position: chr6:43,206,355
INFO 2026-06-08 08:35:40 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:58s. Time for last 10,000,000: 15s. Last read position: chr6:149,683,840
INFO 2026-06-08 08:35:56 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:14s. Time for last 10,000,000: 15s. Last read position: chr7:44,104,707
INFO 2026-06-08 08:36:11 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:30s. Time for last 10,000,000: 15s. Last read position: chr7:94,545,678
INFO 2026-06-08 08:36:27 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:45s. Time for last 10,000,000: 15s. Last read position: chr7:149,011,885
INFO 2026-06-08 08:36:43 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:02s. Time for last 10,000,000: 16s. Last read position: chr8:73,422,657
INFO 2026-06-08 08:37:00 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:18s. Time for last 10,000,000: 16s. Last read position: chr8:143,864,720
INFO 2026-06-08 08:37:17 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:35s. Time for last 10,000,000: 16s. Last read position: chr9:71,729,888
INFO 2026-06-08 08:37:33 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:51s. Time for last 10,000,000: 16s. Last read position: chr9:134,814,851
INFO 2026-06-08 08:37:49 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:08s. Time for last 10,000,000: 16s. Last read position: chr10:68,044,494
INFO 2026-06-08 08:38:05 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:23s. Time for last 10,000,000: 15s. Last read position: chr11:314,276
INFO 2026-06-08 08:38:21 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:40s. Time for last 10,000,000: 16s. Last read position: chr11:47,767,078
INFO 2026-06-08 08:38:38 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:56s. Time for last 10,000,000: 16s. Last read position: chr11:70,407,360
INFO 2026-06-08 08:38:54 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:12s. Time for last 10,000,000: 16s. Last read position: chr12:6,891,822
INFO 2026-06-08 08:39:10 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:28s. Time for last 10,000,000: 16s. Last read position: chr12:57,183,812
INFO 2026-06-08 08:39:28 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:47s. Time for last 10,000,000: 18s. Last read position: chr12:132,570,524
INFO 2026-06-08 08:39:45 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:04s. Time for last 10,000,000: 17s. Last read position: chr14:34,546,736
INFO 2026-06-08 08:40:02 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:20s. Time for last 10,000,000: 16s. Last read position: chr14:104,947,969
INFO 2026-06-08 08:40:17 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:36s. Time for last 10,000,000: 15s. Last read position: chr15:68,303,813
INFO 2026-06-08 08:40:33 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:51s. Time for last 10,000,000: 15s. Last read position: chr16:2,762,059
INFO 2026-06-08 08:40:49 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:07s. Time for last 10,000,000: 15s. Last read position: chr16:21,837,680
INFO 2026-06-08 08:41:04 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:22s. Time for last 10,000,000: 15s. Last read position: chr16:53,686,454
INFO 2026-06-08 08:41:20 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:38s. Time for last 10,000,000: 15s. Last read position: chr16:89,907,452
INFO 2026-06-08 08:41:36 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:54s. Time for last 10,000,000: 15s. Last read position: chr17:37,585,326
INFO 2026-06-08 08:41:51 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:09s. Time for last 10,000,000: 15s. Last read position: chr17:50,187,495
INFO 2026-06-08 08:42:07 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:25s. Time for last 10,000,000: 15s. Last read position: chr17:50,192,801
INFO 2026-06-08 08:42:22 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:41s. Time for last 10,000,000: 15s. Last read position: chr17:50,198,439
INFO 2026-06-08 08:42:40 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:11:58s. Time for last 10,000,000: 17s. Last read position: chr17:80,346,766
INFO 2026-06-08 08:42:57 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:16s. Time for last 10,000,000: 17s. Last read position: chr19:2,111,691
INFO 2026-06-08 08:43:15 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:33s. Time for last 10,000,000: 17s. Last read position: chr19:14,621,693
INFO 2026-06-08 08:43:32 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:50s. Time for last 10,000,000: 16s. Last read position: chr19:39,137,564
INFO 2026-06-08 08:43:47 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:06s. Time for last 10,000,000: 15s. Last read position: chr19:54,465,344
INFO 2026-06-08 08:44:03 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:22s. Time for last 10,000,000: 15s. Last read position: chr20:50,891,884
INFO 2026-06-08 08:44:17 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:36s. Time for last 10,000,000: 14s. Last read position: chr21:8,400,305
INFO 2026-06-08 08:44:32 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:51s. Time for last 10,000,000: 14s. Last read position: chr21:46,003,938
INFO 2026-06-08 08:44:48 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:06s. Time for last 10,000,000: 15s. Last read position: chr22:42,213,155
INFO 2026-06-08 08:45:06 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:24s. Time for last 10,000,000: 17s. Last read position: chrX:71,124,342
INFO 2026-06-08 08:45:24 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:42s. Time for last 10,000,000: 18s. Last read position: GL000220.1:115,489
INFO 2026-06-08 08:45:40 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:14:58s. Time for last 10,000,000: 15s. Last read position: KI270733.1:178,451
INFO 2026-06-08 08:45:52 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 08:45:52 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 08:45:52 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 08:45:52 MarkDuplicates Before output close freeMemory: 203854864; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:45:52 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 08:45:52 MarkDuplicates After output close freeMemory: 104061040; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 08:45:52 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 39.27 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory