Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar Running: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT tih_rna_sample_00115_23H5VFLT4_s35.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00115_23H5VFLT4_s35.md.bam --METRICS_FILE tih_rna_sample_00115_23H5VFLT4_s35.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT 08:06:36.432 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so [Mon Jun 08 08:06:36 GMT 2026] MarkDuplicates --INPUT tih_rna_sample_00115_23H5VFLT4_s35.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00115_23H5VFLT4_s35.md.bam --METRICS_FILE tih_rna_sample_00115_23H5VFLT4_s35.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Mon Jun 08 08:06:36 GMT 2026] Executing as ?@nf-22ecb317181e880743ddc815dfa4956f-76de0-lhqtg on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0 INFO 2026-06-08 08:06:36 MarkDuplicates Start of doWork freeMemory: 105827720; totalMemory: 134217728; maxMemory: 63585648640 INFO 2026-06-08 08:06:36 MarkDuplicates Reading input file and constructing read end information. INFO 2026-06-08 08:06:36 MarkDuplicates Will retain up to 230382784 data points before spilling to disk. INFO 2026-06-08 08:06:41 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:1,054,841 INFO 2026-06-08 08:06:41 MarkDuplicates Tracking 1423 as yet unmatched pairs. 655 records in RAM. INFO 2026-06-08 08:06:44 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 2s. Last read position: chr1:1,564,819 INFO 2026-06-08 08:06:44 MarkDuplicates Tracking 1895 as yet unmatched pairs. 144 records in RAM. INFO 2026-06-08 08:06:48 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 4s. Last read position: chr1:6,462,061 INFO 2026-06-08 08:06:48 MarkDuplicates Tracking 2677 as yet unmatched pairs. 65 records in RAM. INFO 2026-06-08 08:06:53 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 4s. Last read position: chr1:10,105,659 INFO 2026-06-08 08:06:53 MarkDuplicates Tracking 3415 as yet unmatched pairs. 89 records in RAM. INFO 2026-06-08 08:06:56 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 3s. Last read position: chr1:12,276,358 INFO 2026-06-08 08:06:56 MarkDuplicates Tracking 4128 as yet unmatched pairs. 84 records in RAM. INFO 2026-06-08 08:06:59 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 3s. Last read position: chr1:16,514,145 INFO 2026-06-08 08:06:59 MarkDuplicates Tracking 4630 as yet unmatched pairs. 4 records in RAM. INFO 2026-06-08 08:07:02 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 3s. Last read position: chr1:19,201,777 INFO 2026-06-08 08:07:02 MarkDuplicates Tracking 5653 as yet unmatched pairs. 361 records in RAM. INFO 2026-06-08 08:07:05 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:21,834,710 INFO 2026-06-08 08:07:05 MarkDuplicates Tracking 6267 as yet unmatched pairs. 331 records in RAM. INFO 2026-06-08 08:07:09 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 3s. Last read position: chr1:22,639,399 INFO 2026-06-08 08:07:09 MarkDuplicates Tracking 7017 as yet unmatched pairs. 406 records in RAM. INFO 2026-06-08 08:07:11 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:25,809,140 INFO 2026-06-08 08:07:11 MarkDuplicates Tracking 7336 as yet unmatched pairs. 64 records in RAM. INFO 2026-06-08 08:07:14 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 3s. Last read position: chr1:27,551,584 INFO 2026-06-08 08:07:14 MarkDuplicates Tracking 8099 as yet unmatched pairs. 97 records in RAM. INFO 2026-06-08 08:07:17 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:31,434,118 INFO 2026-06-08 08:07:17 MarkDuplicates Tracking 8963 as yet unmatched pairs. 285 records in RAM. INFO 2026-06-08 08:07:20 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 2s. Last read position: chr1:32,695,696 INFO 2026-06-08 08:07:20 MarkDuplicates Tracking 9436 as yet unmatched pairs. 45 records in RAM. INFO 2026-06-08 08:07:22 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 2s. Last read position: chr1:35,841,258 INFO 2026-06-08 08:07:22 MarkDuplicates Tracking 10191 as yet unmatched pairs. 98 records in RAM. INFO 2026-06-08 08:07:24 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:39,333,083 INFO 2026-06-08 08:07:24 MarkDuplicates Tracking 10959 as yet unmatched pairs. 139 records in RAM. INFO 2026-06-08 08:07:28 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 3s. Last read position: chr1:41,172,654 INFO 2026-06-08 08:07:28 MarkDuplicates Tracking 11408 as yet unmatched pairs. 11 records in RAM. INFO 2026-06-08 08:07:30 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 2s. Last read position: chr1:43,674,829 INFO 2026-06-08 08:07:30 MarkDuplicates Tracking 12205 as yet unmatched pairs. 42 records in RAM. INFO 2026-06-08 08:07:32 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:46,310,268 INFO 2026-06-08 08:07:32 MarkDuplicates Tracking 12819 as yet unmatched pairs. 23 records in RAM. INFO 2026-06-08 08:07:34 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 2s. Last read position: chr1:54,251,824 INFO 2026-06-08 08:07:34 MarkDuplicates Tracking 13534 as yet unmatched pairs. 66 records in RAM. INFO 2026-06-08 08:07:36 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:65,854,766 INFO 2026-06-08 08:07:36 MarkDuplicates Tracking 14226 as yet unmatched pairs. 16 records in RAM. INFO 2026-06-08 08:07:38 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 2s. Last read position: chr1:84,485,238 INFO 2026-06-08 08:07:38 MarkDuplicates Tracking 14705 as yet unmatched pairs. 17 records in RAM. INFO 2026-06-08 08:07:40 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:93,589,176 INFO 2026-06-08 08:07:40 MarkDuplicates Tracking 15383 as yet unmatched pairs. 122 records in RAM. INFO 2026-06-08 08:07:42 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:102,962,236 INFO 2026-06-08 08:07:42 MarkDuplicates Tracking 16409 as yet unmatched pairs. 483 records in RAM. INFO 2026-06-08 08:07:44 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 2s. Last read position: chr1:109,270,058 INFO 2026-06-08 08:07:44 MarkDuplicates Tracking 16608 as yet unmatched pairs. 48 records in RAM. INFO 2026-06-08 08:07:47 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 2s. Last read position: chr1:112,702,669 INFO 2026-06-08 08:07:47 MarkDuplicates Tracking 17437 as yet unmatched pairs. 239 records in RAM. INFO 2026-06-08 08:07:49 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 2s. Last read position: chr1:116,910,202 INFO 2026-06-08 08:07:49 MarkDuplicates Tracking 18157 as yet unmatched pairs. 242 records in RAM. INFO 2026-06-08 08:07:52 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 2s. Last read position: chr1:119,929,127 INFO 2026-06-08 08:07:52 MarkDuplicates Tracking 18800 as yet unmatched pairs. 273 records in RAM. INFO 2026-06-08 08:07:54 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:120,793,236 INFO 2026-06-08 08:07:54 MarkDuplicates Tracking 19095 as yet unmatched pairs. 124 records in RAM. INFO 2026-06-08 08:07:55 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:145,850,484 INFO 2026-06-08 08:07:55 MarkDuplicates Tracking 19342 as yet unmatched pairs. 102 records in RAM. INFO 2026-06-08 08:07:57 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:147,166,581 INFO 2026-06-08 08:07:57 MarkDuplicates Tracking 19543 as yet unmatched pairs. 36 records in RAM. INFO 2026-06-08 08:07:59 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 2s. Last read position: chr1:148,640,077 INFO 2026-06-08 08:07:59 MarkDuplicates Tracking 19990 as yet unmatched pairs. 227 records in RAM. INFO 2026-06-08 08:08:01 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:149,885,614 INFO 2026-06-08 08:08:01 MarkDuplicates Tracking 20111 as yet unmatched pairs. 20 records in RAM. INFO 2026-06-08 08:08:02 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:150,842,433 INFO 2026-06-08 08:08:02 MarkDuplicates Tracking 20758 as yet unmatched pairs. 59 records in RAM. INFO 2026-06-08 08:08:04 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:152,214,970 INFO 2026-06-08 08:08:04 MarkDuplicates Tracking 21322 as yet unmatched pairs. 122 records in RAM. INFO 2026-06-08 08:08:06 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:154,170,397 INFO 2026-06-08 08:08:06 MarkDuplicates Tracking 22728 as yet unmatched pairs. 1045 records in RAM. INFO 2026-06-08 08:08:09 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 2s. Last read position: chr1:154,967,980 INFO 2026-06-08 08:08:09 MarkDuplicates Tracking 22559 as yet unmatched pairs. 172 records in RAM. INFO 2026-06-08 08:08:11 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 2s. Last read position: chr1:155,213,334 INFO 2026-06-08 08:08:11 MarkDuplicates Tracking 23008 as yet unmatched pairs. 4 records in RAM. INFO 2026-06-08 08:08:14 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 2s. Last read position: chr1:155,915,843 INFO 2026-06-08 08:08:14 MarkDuplicates Tracking 23654 as yet unmatched pairs. 52 records in RAM. INFO 2026-06-08 08:08:16 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:156,138,647 INFO 2026-06-08 08:08:16 MarkDuplicates Tracking 25182 as yet unmatched pairs. 779 records in RAM. INFO 2026-06-08 08:08:18 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:156,978,206 INFO 2026-06-08 08:08:18 MarkDuplicates Tracking 25206 as yet unmatched pairs. 32 records in RAM. INFO 2026-06-08 08:08:20 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:161,048,419 INFO 2026-06-08 08:08:20 MarkDuplicates Tracking 25876 as yet unmatched pairs. 25 records in RAM. INFO 2026-06-08 08:08:21 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:163,168,262 INFO 2026-06-08 08:08:21 MarkDuplicates Tracking 26390 as yet unmatched pairs. 2 records in RAM. INFO 2026-06-08 08:08:25 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 3s. Last read position: chr1:170,730,333 INFO 2026-06-08 08:08:25 MarkDuplicates Tracking 27397 as yet unmatched pairs. 336 records in RAM. INFO 2026-06-08 08:08:27 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 2s. Last read position: chr1:175,162,203 INFO 2026-06-08 08:08:27 MarkDuplicates Tracking 27594 as yet unmatched pairs. 5 records in RAM. INFO 2026-06-08 08:08:29 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 2s. Last read position: chr1:183,127,356 INFO 2026-06-08 08:08:29 MarkDuplicates Tracking 28393 as yet unmatched pairs. 97 records in RAM. INFO 2026-06-08 08:08:32 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 2s. Last read position: chr1:186,343,394 INFO 2026-06-08 08:08:32 MarkDuplicates Tracking 28994 as yet unmatched pairs. 127 records in RAM. INFO 2026-06-08 08:08:34 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 2s. Last read position: chr1:201,622,944 INFO 2026-06-08 08:08:34 MarkDuplicates Tracking 29510 as yet unmatched pairs. 93 records in RAM. INFO 2026-06-08 08:08:36 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr1:203,486,727 INFO 2026-06-08 08:08:36 MarkDuplicates Tracking 30165 as yet unmatched pairs. 147 records in RAM. INFO 2026-06-08 08:08:39 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 2s. Last read position: chr1:206,454,973 INFO 2026-06-08 08:08:39 MarkDuplicates Tracking 30653 as yet unmatched pairs. 15 records in RAM. INFO 2026-06-08 08:08:41 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 2s. Last read position: chr1:211,978,492 INFO 2026-06-08 08:08:41 MarkDuplicates Tracking 31319 as yet unmatched pairs. 17 records in RAM. INFO 2026-06-08 08:08:43 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr1:222,644,411 INFO 2026-06-08 08:08:43 MarkDuplicates Tracking 31994 as yet unmatched pairs. 61 records in RAM. INFO 2026-06-08 08:08:45 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr1:225,567,372 INFO 2026-06-08 08:08:45 MarkDuplicates Tracking 32911 as yet unmatched pairs. 381 records in RAM. INFO 2026-06-08 08:08:47 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 2s. Last read position: chr1:228,292,543 INFO 2026-06-08 08:08:47 MarkDuplicates Tracking 33274 as yet unmatched pairs. 30 records in RAM. INFO 2026-06-08 08:08:49 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr1:233,218,038 INFO 2026-06-08 08:08:49 MarkDuplicates Tracking 34324 as yet unmatched pairs. 197 records in RAM. INFO 2026-06-08 08:08:51 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr1:243,225,235 INFO 2026-06-08 08:08:51 MarkDuplicates Tracking 34827 as yet unmatched pairs. 17 records in RAM. INFO 2026-06-08 08:08:53 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 2s. Last read position: chr1:247,309,711 INFO 2026-06-08 08:08:53 MarkDuplicates Tracking 35439 as yet unmatched pairs. 12 records in RAM. INFO 2026-06-08 08:08:55 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 2s. Last read position: chr2:9,875,978 INFO 2026-06-08 08:08:55 MarkDuplicates Tracking 36102 as yet unmatched pairs. 35811 records in RAM. INFO 2026-06-08 08:08:57 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 2s. Last read position: chr2:20,204,028 INFO 2026-06-08 08:08:57 MarkDuplicates Tracking 37949 as yet unmatched pairs. 37645 records in RAM. INFO 2026-06-08 08:09:00 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 2s. Last read position: chr2:27,038,481 INFO 2026-06-08 08:09:00 MarkDuplicates Tracking 37433 as yet unmatched pairs. 37122 records in RAM. INFO 2026-06-08 08:09:02 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:28,800,157 INFO 2026-06-08 08:09:02 MarkDuplicates Tracking 38221 as yet unmatched pairs. 37908 records in RAM. INFO 2026-06-08 08:09:04 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264 INFO 2026-06-08 08:09:04 MarkDuplicates Tracking 265241 as yet unmatched pairs. 26934 records in RAM. INFO 2026-06-08 08:09:06 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:37,200,819 INFO 2026-06-08 08:09:06 MarkDuplicates Tracking 323565 as yet unmatched pairs. 24035 records in RAM. INFO 2026-06-08 08:09:08 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:43,700,195 INFO 2026-06-08 08:09:08 MarkDuplicates Tracking 322949 as yet unmatched pairs. 23417 records in RAM. INFO 2026-06-08 08:09:10 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:55,049,921 INFO 2026-06-08 08:09:10 MarkDuplicates Tracking 322690 as yet unmatched pairs. 23151 records in RAM. INFO 2026-06-08 08:09:12 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:64,636,023 INFO 2026-06-08 08:09:12 MarkDuplicates Tracking 321812 as yet unmatched pairs. 22271 records in RAM. INFO 2026-06-08 08:09:14 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:71,133,222 INFO 2026-06-08 08:09:14 MarkDuplicates Tracking 321230 as yet unmatched pairs. 21688 records in RAM. INFO 2026-06-08 08:09:16 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:74,961,941 INFO 2026-06-08 08:09:16 MarkDuplicates Tracking 320547 as yet unmatched pairs. 20999 records in RAM. INFO 2026-06-08 08:09:17 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:87,785,074 INFO 2026-06-08 08:09:17 MarkDuplicates Tracking 319961 as yet unmatched pairs. 20410 records in RAM. INFO 2026-06-08 08:09:20 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr2:97,589,585 INFO 2026-06-08 08:09:20 MarkDuplicates Tracking 319618 as yet unmatched pairs. 20063 records in RAM. INFO 2026-06-08 08:09:21 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:108,719,569 INFO 2026-06-08 08:09:21 MarkDuplicates Tracking 319124 as yet unmatched pairs. 19560 records in RAM. INFO 2026-06-08 08:09:23 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:110,563,255 INFO 2026-06-08 08:09:23 MarkDuplicates Tracking 318804 as yet unmatched pairs. 19235 records in RAM. INFO 2026-06-08 08:09:25 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:119,368,186 INFO 2026-06-08 08:09:25 MarkDuplicates Tracking 318374 as yet unmatched pairs. 18797 records in RAM. INFO 2026-06-08 08:09:27 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:135,510,583 INFO 2026-06-08 08:09:27 MarkDuplicates Tracking 317804 as yet unmatched pairs. 18216 records in RAM. INFO 2026-06-08 08:09:29 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr2:159,383,608 INFO 2026-06-08 08:09:29 MarkDuplicates Tracking 317316 as yet unmatched pairs. 17722 records in RAM. INFO 2026-06-08 08:09:31 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 2s. Last read position: chr2:171,837,164 INFO 2026-06-08 08:09:31 MarkDuplicates Tracking 316731 as yet unmatched pairs. 17130 records in RAM. INFO 2026-06-08 08:09:34 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 2s. Last read position: chr2:182,728,600 INFO 2026-06-08 08:09:34 MarkDuplicates Tracking 316216 as yet unmatched pairs. 16610 records in RAM. INFO 2026-06-08 08:09:36 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 2s. Last read position: chr2:188,995,093 INFO 2026-06-08 08:09:36 MarkDuplicates Tracking 316180 as yet unmatched pairs. 16573 records in RAM. INFO 2026-06-08 08:09:39 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 2s. Last read position: chr2:189,010,181 INFO 2026-06-08 08:09:39 MarkDuplicates Tracking 315139 as yet unmatched pairs. 15528 records in RAM. INFO 2026-06-08 08:09:41 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:189,133,722 INFO 2026-06-08 08:09:41 MarkDuplicates Tracking 314321 as yet unmatched pairs. 14710 records in RAM. INFO 2026-06-08 08:09:43 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 2s. Last read position: chr2:200,477,875 INFO 2026-06-08 08:09:43 MarkDuplicates Tracking 313471 as yet unmatched pairs. 13857 records in RAM. INFO 2026-06-08 08:09:45 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 2s. Last read position: chr2:207,560,128 INFO 2026-06-08 08:09:45 MarkDuplicates Tracking 312966 as yet unmatched pairs. 13351 records in RAM. INFO 2026-06-08 08:09:47 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:215,361,972 INFO 2026-06-08 08:09:47 MarkDuplicates Tracking 320975 as yet unmatched pairs. 21355 records in RAM. INFO 2026-06-08 08:09:49 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:215,367,981 INFO 2026-06-08 08:09:49 MarkDuplicates Tracking 316019 as yet unmatched pairs. 16399 records in RAM. INFO 2026-06-08 08:09:51 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 2s. Last read position: chr2:215,372,077 INFO 2026-06-08 08:09:51 MarkDuplicates Tracking 316242 as yet unmatched pairs. 16622 records in RAM. INFO 2026-06-08 08:09:53 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,352 INFO 2026-06-08 08:09:53 MarkDuplicates Tracking 316372 as yet unmatched pairs. 16752 records in RAM. INFO 2026-06-08 08:09:55 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 2s. Last read position: chr2:215,375,382 INFO 2026-06-08 08:09:55 MarkDuplicates Tracking 321181 as yet unmatched pairs. 21555 records in RAM. INFO 2026-06-08 08:09:57 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 2s. Last read position: chr2:215,378,177 INFO 2026-06-08 08:09:57 MarkDuplicates Tracking 314121 as yet unmatched pairs. 14495 records in RAM. INFO 2026-06-08 08:10:00 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 2s. Last read position: chr2:215,382,212 INFO 2026-06-08 08:10:00 MarkDuplicates Tracking 314147 as yet unmatched pairs. 14520 records in RAM. INFO 2026-06-08 08:10:02 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 2s. Last read position: chr2:215,384,931 INFO 2026-06-08 08:10:02 MarkDuplicates Tracking 311843 as yet unmatched pairs. 12216 records in RAM. INFO 2026-06-08 08:10:04 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 2s. Last read position: chr2:215,391,709 INFO 2026-06-08 08:10:04 MarkDuplicates Tracking 309701 as yet unmatched pairs. 10074 records in RAM. INFO 2026-06-08 08:10:06 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 2s. Last read position: chr2:215,397,737 INFO 2026-06-08 08:10:06 MarkDuplicates Tracking 311297 as yet unmatched pairs. 11670 records in RAM. INFO 2026-06-08 08:10:09 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 2s. Last read position: chr2:215,406,276 INFO 2026-06-08 08:10:09 MarkDuplicates Tracking 311235 as yet unmatched pairs. 11607 records in RAM. INFO 2026-06-08 08:10:11 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,129 INFO 2026-06-08 08:10:11 MarkDuplicates Tracking 313973 as yet unmatched pairs. 14345 records in RAM. INFO 2026-06-08 08:10:13 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 2s. Last read position: chr2:215,409,989 INFO 2026-06-08 08:10:13 MarkDuplicates Tracking 309336 as yet unmatched pairs. 9708 records in RAM. INFO 2026-06-08 08:10:15 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr2:215,420,779 INFO 2026-06-08 08:10:15 MarkDuplicates Tracking 307446 as yet unmatched pairs. 7817 records in RAM. INFO 2026-06-08 08:10:17 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 2s. Last read position: chr2:215,425,152 INFO 2026-06-08 08:10:17 MarkDuplicates Tracking 308151 as yet unmatched pairs. 8514 records in RAM. INFO 2026-06-08 08:10:19 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 2s. Last read position: chr2:215,431,927 INFO 2026-06-08 08:10:19 MarkDuplicates Tracking 307433 as yet unmatched pairs. 7786 records in RAM. INFO 2026-06-08 08:10:22 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 2s. Last read position: chr2:216,678,208 INFO 2026-06-08 08:10:22 MarkDuplicates Tracking 303859 as yet unmatched pairs. 4206 records in RAM. INFO 2026-06-08 08:10:24 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 2s. Last read position: chr2:219,230,342 INFO 2026-06-08 08:10:24 MarkDuplicates Tracking 303057 as yet unmatched pairs. 3404 records in RAM. INFO 2026-06-08 08:10:26 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr2:226,798,238 INFO 2026-06-08 08:10:26 MarkDuplicates Tracking 302171 as yet unmatched pairs. 2444 records in RAM. INFO 2026-06-08 08:10:28 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr2:235,915,590 INFO 2026-06-08 08:10:28 MarkDuplicates Tracking 301571 as yet unmatched pairs. 1836 records in RAM. INFO 2026-06-08 08:10:30 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 2s. Last read position: chr2:237,371,732 INFO 2026-06-08 08:10:30 MarkDuplicates Tracking 301474 as yet unmatched pairs. 1738 records in RAM. INFO 2026-06-08 08:10:32 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr2:240,466,133 INFO 2026-06-08 08:10:32 MarkDuplicates Tracking 300410 as yet unmatched pairs. 671 records in RAM. INFO 2026-06-08 08:10:35 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 2s. Last read position: chr3:4,983,418 INFO 2026-06-08 08:10:35 MarkDuplicates Tracking 299913 as yet unmatched pairs. 17916 records in RAM. INFO 2026-06-08 08:10:37 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 2s. Last read position: chr3:10,301,071 INFO 2026-06-08 08:10:37 MarkDuplicates Tracking 299043 as yet unmatched pairs. 17040 records in RAM. INFO 2026-06-08 08:10:39 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 2s. Last read position: chr3:14,402,742 INFO 2026-06-08 08:10:39 MarkDuplicates Tracking 298437 as yet unmatched pairs. 16430 records in RAM. INFO 2026-06-08 08:10:42 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 2s. Last read position: chr3:24,457,322 INFO 2026-06-08 08:10:42 MarkDuplicates Tracking 297833 as yet unmatched pairs. 15820 records in RAM. INFO 2026-06-08 08:10:44 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 2s. Last read position: chr3:36,855,558 INFO 2026-06-08 08:10:44 MarkDuplicates Tracking 297214 as yet unmatched pairs. 15187 records in RAM. INFO 2026-06-08 08:10:46 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 2s. Last read position: chr3:41,236,633 INFO 2026-06-08 08:10:46 MarkDuplicates Tracking 296853 as yet unmatched pairs. 14820 records in RAM. INFO 2026-06-08 08:10:49 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 2s. Last read position: chr3:46,439,303 INFO 2026-06-08 08:10:49 MarkDuplicates Tracking 296504 as yet unmatched pairs. 14464 records in RAM. INFO 2026-06-08 08:10:51 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:47,661,710 INFO 2026-06-08 08:10:51 MarkDuplicates Tracking 295398 as yet unmatched pairs. 13357 records in RAM. INFO 2026-06-08 08:10:53 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 2s. Last read position: chr3:48,659,091 INFO 2026-06-08 08:10:53 MarkDuplicates Tracking 294768 as yet unmatched pairs. 12725 records in RAM. INFO 2026-06-08 08:10:56 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 2s. Last read position: chr3:49,132,517 INFO 2026-06-08 08:10:56 MarkDuplicates Tracking 294253 as yet unmatched pairs. 12208 records in RAM. INFO 2026-06-08 08:10:58 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:50,176,812 INFO 2026-06-08 08:10:58 MarkDuplicates Tracking 293316 as yet unmatched pairs. 11269 records in RAM. INFO 2026-06-08 08:11:00 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 2s. Last read position: chr3:52,435,828 INFO 2026-06-08 08:11:00 MarkDuplicates Tracking 292626 as yet unmatched pairs. 10578 records in RAM. INFO 2026-06-08 08:11:03 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 2s. Last read position: chr3:58,077,178 INFO 2026-06-08 08:11:03 MarkDuplicates Tracking 292042 as yet unmatched pairs. 9990 records in RAM. INFO 2026-06-08 08:11:05 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 2s. Last read position: chr3:69,879,181 INFO 2026-06-08 08:11:05 MarkDuplicates Tracking 291704 as yet unmatched pairs. 9636 records in RAM. INFO 2026-06-08 08:11:07 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr3:99,794,541 INFO 2026-06-08 08:11:07 MarkDuplicates Tracking 290789 as yet unmatched pairs. 8714 records in RAM. INFO 2026-06-08 08:11:09 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr3:111,145,015 INFO 2026-06-08 08:11:09 MarkDuplicates Tracking 290014 as yet unmatched pairs. 7938 records in RAM. INFO 2026-06-08 08:11:11 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 2s. Last read position: chr3:120,328,747 INFO 2026-06-08 08:11:11 MarkDuplicates Tracking 289425 as yet unmatched pairs. 7342 records in RAM. INFO 2026-06-08 08:11:13 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr3:123,638,088 INFO 2026-06-08 08:11:13 MarkDuplicates Tracking 288903 as yet unmatched pairs. 6816 records in RAM. INFO 2026-06-08 08:11:15 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr3:127,017,425 INFO 2026-06-08 08:11:15 MarkDuplicates Tracking 288297 as yet unmatched pairs. 6207 records in RAM. INFO 2026-06-08 08:11:17 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr3:129,559,678 INFO 2026-06-08 08:11:17 MarkDuplicates Tracking 287646 as yet unmatched pairs. 5554 records in RAM. INFO 2026-06-08 08:11:19 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 2s. Last read position: chr3:136,017,728 INFO 2026-06-08 08:11:19 MarkDuplicates Tracking 287063 as yet unmatched pairs. 4968 records in RAM. INFO 2026-06-08 08:11:20 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr3:143,056,310 INFO 2026-06-08 08:11:20 MarkDuplicates Tracking 286372 as yet unmatched pairs. 4272 records in RAM. INFO 2026-06-08 08:11:22 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr3:151,300,078 INFO 2026-06-08 08:11:22 MarkDuplicates Tracking 285638 as yet unmatched pairs. 3532 records in RAM. INFO 2026-06-08 08:11:24 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 2s. Last read position: chr3:167,688,650 INFO 2026-06-08 08:11:24 MarkDuplicates Tracking 285109 as yet unmatched pairs. 2992 records in RAM. INFO 2026-06-08 08:11:26 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr3:179,210,442 INFO 2026-06-08 08:11:26 MarkDuplicates Tracking 284625 as yet unmatched pairs. 2502 records in RAM. INFO 2026-06-08 08:11:28 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 2s. Last read position: chr3:184,326,904 INFO 2026-06-08 08:11:28 MarkDuplicates Tracking 283910 as yet unmatched pairs. 1782 records in RAM. INFO 2026-06-08 08:11:30 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr3:188,609,390 INFO 2026-06-08 08:11:30 MarkDuplicates Tracking 284445 as yet unmatched pairs. 2312 records in RAM. INFO 2026-06-08 08:11:32 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr3:195,725,433 INFO 2026-06-08 08:11:32 MarkDuplicates Tracking 282696 as yet unmatched pairs. 561 records in RAM. INFO 2026-06-08 08:11:34 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 2s. Last read position: chr4:751,131 INFO 2026-06-08 08:11:34 MarkDuplicates Tracking 282075 as yet unmatched pairs. 8279 records in RAM. INFO 2026-06-08 08:11:37 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 2s. Last read position: chr4:2,746,425 INFO 2026-06-08 08:11:37 MarkDuplicates Tracking 281263 as yet unmatched pairs. 7466 records in RAM. INFO 2026-06-08 08:11:39 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 2s. Last read position: chr4:8,270,248 INFO 2026-06-08 08:11:39 MarkDuplicates Tracking 280576 as yet unmatched pairs. 6774 records in RAM. INFO 2026-06-08 08:11:41 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 2s. Last read position: chr4:25,662,740 INFO 2026-06-08 08:11:41 MarkDuplicates Tracking 280075 as yet unmatched pairs. 6263 records in RAM. INFO 2026-06-08 08:11:44 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 2s. Last read position: chr4:41,013,695 INFO 2026-06-08 08:11:44 MarkDuplicates Tracking 279310 as yet unmatched pairs. 5488 records in RAM. INFO 2026-06-08 08:11:45 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr4:56,973,238 INFO 2026-06-08 08:11:45 MarkDuplicates Tracking 278772 as yet unmatched pairs. 4942 records in RAM. INFO 2026-06-08 08:11:48 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 2s. Last read position: chr4:77,011,841 INFO 2026-06-08 08:11:48 MarkDuplicates Tracking 278367 as yet unmatched pairs. 4533 records in RAM. INFO 2026-06-08 08:11:50 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr4:87,473,773 INFO 2026-06-08 08:11:50 MarkDuplicates Tracking 277734 as yet unmatched pairs. 3899 records in RAM. INFO 2026-06-08 08:11:51 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr4:103,149,204 INFO 2026-06-08 08:11:51 MarkDuplicates Tracking 277067 as yet unmatched pairs. 3231 records in RAM. INFO 2026-06-08 08:11:53 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr4:121,677,879 INFO 2026-06-08 08:11:53 MarkDuplicates Tracking 276593 as yet unmatched pairs. 2740 records in RAM. INFO 2026-06-08 08:11:55 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr4:143,513,860 INFO 2026-06-08 08:11:55 MarkDuplicates Tracking 276017 as yet unmatched pairs. 2143 records in RAM. INFO 2026-06-08 08:11:57 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 2s. Last read position: chr4:153,788,580 INFO 2026-06-08 08:11:57 MarkDuplicates Tracking 275671 as yet unmatched pairs. 1785 records in RAM. INFO 2026-06-08 08:12:00 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 2s. Last read position: chr4:168,878,041 INFO 2026-06-08 08:12:00 MarkDuplicates Tracking 275310 as yet unmatched pairs. 1421 records in RAM. INFO 2026-06-08 08:12:01 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr4:186,603,424 INFO 2026-06-08 08:12:01 MarkDuplicates Tracking 274159 as yet unmatched pairs. 267 records in RAM. INFO 2026-06-08 08:12:03 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 2s. Last read position: chr5:6,746,283 INFO 2026-06-08 08:12:03 MarkDuplicates Tracking 273395 as yet unmatched pairs. 13317 records in RAM. INFO 2026-06-08 08:12:05 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr5:14,388,615 INFO 2026-06-08 08:12:05 MarkDuplicates Tracking 273294 as yet unmatched pairs. 13209 records in RAM. INFO 2026-06-08 08:12:07 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr5:16,701,205 INFO 2026-06-08 08:12:07 MarkDuplicates Tracking 271898 as yet unmatched pairs. 11808 records in RAM. INFO 2026-06-08 08:12:09 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr5:37,206,307 INFO 2026-06-08 08:12:09 MarkDuplicates Tracking 271323 as yet unmatched pairs. 11229 records in RAM. INFO 2026-06-08 08:12:11 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr5:56,815,792 INFO 2026-06-08 08:12:11 MarkDuplicates Tracking 270762 as yet unmatched pairs. 10665 records in RAM. INFO 2026-06-08 08:12:13 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr5:70,449,652 INFO 2026-06-08 08:12:13 MarkDuplicates Tracking 270259 as yet unmatched pairs. 10160 records in RAM. INFO 2026-06-08 08:12:15 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr5:78,216,092 INFO 2026-06-08 08:12:15 MarkDuplicates Tracking 269806 as yet unmatched pairs. 9703 records in RAM. INFO 2026-06-08 08:12:17 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr5:83,540,398 INFO 2026-06-08 08:12:17 MarkDuplicates Tracking 269529 as yet unmatched pairs. 9423 records in RAM. INFO 2026-06-08 08:12:18 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr5:102,694,005 INFO 2026-06-08 08:12:18 MarkDuplicates Tracking 268662 as yet unmatched pairs. 8552 records in RAM. INFO 2026-06-08 08:12:21 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 2s. Last read position: chr5:122,077,721 INFO 2026-06-08 08:12:21 MarkDuplicates Tracking 268190 as yet unmatched pairs. 8077 records in RAM. INFO 2026-06-08 08:12:23 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 2s. Last read position: chr5:134,620,947 INFO 2026-06-08 08:12:23 MarkDuplicates Tracking 267485 as yet unmatched pairs. 7368 records in RAM. INFO 2026-06-08 08:12:25 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr5:139,574,569 INFO 2026-06-08 08:12:25 MarkDuplicates Tracking 266942 as yet unmatched pairs. 6823 records in RAM. INFO 2026-06-08 08:12:27 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 2s. Last read position: chr5:141,214,714 INFO 2026-06-08 08:12:27 MarkDuplicates Tracking 266349 as yet unmatched pairs. 6097 records in RAM. INFO 2026-06-08 08:12:29 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr5:141,956,328 INFO 2026-06-08 08:12:29 MarkDuplicates Tracking 265547 as yet unmatched pairs. 5294 records in RAM. INFO 2026-06-08 08:12:31 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 2s. Last read position: chr5:150,117,740 INFO 2026-06-08 08:12:31 MarkDuplicates Tracking 265451 as yet unmatched pairs. 5196 records in RAM. INFO 2026-06-08 08:12:33 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,217 INFO 2026-06-08 08:12:33 MarkDuplicates Tracking 268412 as yet unmatched pairs. 8157 records in RAM. INFO 2026-06-08 08:12:35 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr5:150,648,082 INFO 2026-06-08 08:12:35 MarkDuplicates Tracking 263747 as yet unmatched pairs. 3491 records in RAM. INFO 2026-06-08 08:12:37 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr5:151,786,656 INFO 2026-06-08 08:12:37 MarkDuplicates Tracking 263196 as yet unmatched pairs. 2938 records in RAM. INFO 2026-06-08 08:12:39 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr5:170,794,236 INFO 2026-06-08 08:12:39 MarkDuplicates Tracking 262458 as yet unmatched pairs. 2185 records in RAM. INFO 2026-06-08 08:12:41 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr5:177,332,072 INFO 2026-06-08 08:12:41 MarkDuplicates Tracking 262076 as yet unmatched pairs. 1798 records in RAM. INFO 2026-06-08 08:12:42 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr5:179,706,262 INFO 2026-06-08 08:12:42 MarkDuplicates Tracking 261214 as yet unmatched pairs. 933 records in RAM. INFO 2026-06-08 08:12:44 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr5:181,239,066 INFO 2026-06-08 08:12:44 MarkDuplicates Tracking 260450 as yet unmatched pairs. 168 records in RAM. INFO 2026-06-08 08:12:46 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 2s. Last read position: chr6:7,230,498 INFO 2026-06-08 08:12:46 MarkDuplicates Tracking 259838 as yet unmatched pairs. 16139 records in RAM. INFO 2026-06-08 08:12:48 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 2s. Last read position: chr6:12,294,004 INFO 2026-06-08 08:12:48 MarkDuplicates Tracking 259055 as yet unmatched pairs. 15354 records in RAM. INFO 2026-06-08 08:12:50 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:22,042,966 INFO 2026-06-08 08:12:50 MarkDuplicates Tracking 258360 as yet unmatched pairs. 14650 records in RAM. INFO 2026-06-08 08:12:52 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 2s. Last read position: chr6:29,604,540 INFO 2026-06-08 08:12:52 MarkDuplicates Tracking 257941 as yet unmatched pairs. 14226 records in RAM. INFO 2026-06-08 08:12:54 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr6:30,584,463 INFO 2026-06-08 08:12:54 MarkDuplicates Tracking 257352 as yet unmatched pairs. 13636 records in RAM. INFO 2026-06-08 08:12:56 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 2s. Last read position: chr6:31,271,830 INFO 2026-06-08 08:12:56 MarkDuplicates Tracking 257294 as yet unmatched pairs. 13575 records in RAM. INFO 2026-06-08 08:12:59 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 2s. Last read position: chr6:31,649,561 INFO 2026-06-08 08:12:59 MarkDuplicates Tracking 256164 as yet unmatched pairs. 12445 records in RAM. INFO 2026-06-08 08:13:01 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr6:31,968,480 INFO 2026-06-08 08:13:01 MarkDuplicates Tracking 255570 as yet unmatched pairs. 11837 records in RAM. INFO 2026-06-08 08:13:03 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr6:32,579,076 INFO 2026-06-08 08:13:03 MarkDuplicates Tracking 255053 as yet unmatched pairs. 11319 records in RAM. INFO 2026-06-08 08:13:05 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:33,301,178 INFO 2026-06-08 08:13:05 MarkDuplicates Tracking 254363 as yet unmatched pairs. 10629 records in RAM. INFO 2026-06-08 08:13:07 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 2s. Last read position: chr6:34,836,293 INFO 2026-06-08 08:13:07 MarkDuplicates Tracking 253568 as yet unmatched pairs. 9815 records in RAM. INFO 2026-06-08 08:13:09 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 2s. Last read position: chr6:41,588,683 INFO 2026-06-08 08:13:09 MarkDuplicates Tracking 253113 as yet unmatched pairs. 9354 records in RAM. INFO 2026-06-08 08:13:11 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 2s. Last read position: chr6:43,206,355 INFO 2026-06-08 08:13:11 MarkDuplicates Tracking 252347 as yet unmatched pairs. 8587 records in RAM. INFO 2026-06-08 08:13:13 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr6:46,410,410 INFO 2026-06-08 08:13:13 MarkDuplicates Tracking 251483 as yet unmatched pairs. 7719 records in RAM. INFO 2026-06-08 08:13:15 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr6:56,552,643 INFO 2026-06-08 08:13:15 MarkDuplicates Tracking 251055 as yet unmatched pairs. 7283 records in RAM. INFO 2026-06-08 08:13:17 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 2s. Last read position: chr6:75,087,589 INFO 2026-06-08 08:13:17 MarkDuplicates Tracking 251625 as yet unmatched pairs. 7849 records in RAM. INFO 2026-06-08 08:13:19 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr6:75,156,341 INFO 2026-06-08 08:13:19 MarkDuplicates Tracking 250746 as yet unmatched pairs. 6970 records in RAM. INFO 2026-06-08 08:13:21 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 2s. Last read position: chr6:83,135,710 INFO 2026-06-08 08:13:21 MarkDuplicates Tracking 249278 as yet unmatched pairs. 5500 records in RAM. INFO 2026-06-08 08:13:23 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr6:105,722,348 INFO 2026-06-08 08:13:23 MarkDuplicates Tracking 248606 as yet unmatched pairs. 4818 records in RAM. INFO 2026-06-08 08:13:25 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr6:113,860,242 INFO 2026-06-08 08:13:25 MarkDuplicates Tracking 247981 as yet unmatched pairs. 4184 records in RAM. INFO 2026-06-08 08:13:27 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 2s. Last read position: chr6:128,078,867 INFO 2026-06-08 08:13:27 MarkDuplicates Tracking 247408 as yet unmatched pairs. 3598 records in RAM. INFO 2026-06-08 08:13:29 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 2s. Last read position: chr6:138,432,958 INFO 2026-06-08 08:13:29 MarkDuplicates Tracking 246737 as yet unmatched pairs. 2918 records in RAM. INFO 2026-06-08 08:13:31 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 2s. Last read position: chr6:149,683,840 INFO 2026-06-08 08:13:31 MarkDuplicates Tracking 246288 as yet unmatched pairs. 2468 records in RAM. INFO 2026-06-08 08:13:34 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 2s. Last read position: chr6:157,932,195 INFO 2026-06-08 08:13:34 MarkDuplicates Tracking 245536 as yet unmatched pairs. 1709 records in RAM. INFO 2026-06-08 08:13:36 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 2s. Last read position: chr6:159,969,279 INFO 2026-06-08 08:13:36 MarkDuplicates Tracking 244972 as yet unmatched pairs. 1145 records in RAM. INFO 2026-06-08 08:13:38 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 2s. Last read position: chr6:169,228,234 INFO 2026-06-08 08:13:38 MarkDuplicates Tracking 244535 as yet unmatched pairs. 698 records in RAM. INFO 2026-06-08 08:13:41 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 2s. Last read position: chr7:1,473,854 INFO 2026-06-08 08:13:41 MarkDuplicates Tracking 243679 as yet unmatched pairs. 16840 records in RAM. INFO 2026-06-08 08:13:43 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 2s. Last read position: chr7:5,370,713 INFO 2026-06-08 08:13:43 MarkDuplicates Tracking 243041 as yet unmatched pairs. 16198 records in RAM. INFO 2026-06-08 08:13:45 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 2s. Last read position: chr7:5,528,659 INFO 2026-06-08 08:13:45 MarkDuplicates Tracking 242267 as yet unmatched pairs. 15424 records in RAM. INFO 2026-06-08 08:13:47 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr7:10,974,291 INFO 2026-06-08 08:13:47 MarkDuplicates Tracking 241393 as yet unmatched pairs. 14550 records in RAM. INFO 2026-06-08 08:13:49 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 2s. Last read position: chr7:26,864,424 INFO 2026-06-08 08:13:49 MarkDuplicates Tracking 240715 as yet unmatched pairs. 13871 records in RAM. INFO 2026-06-08 08:13:51 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr7:37,914,373 INFO 2026-06-08 08:13:51 MarkDuplicates Tracking 240073 as yet unmatched pairs. 13223 records in RAM. INFO 2026-06-08 08:13:53 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:44,104,707 INFO 2026-06-08 08:13:53 MarkDuplicates Tracking 239718 as yet unmatched pairs. 12864 records in RAM. INFO 2026-06-08 08:13:55 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 2s. Last read position: chr7:44,114,151 INFO 2026-06-08 08:13:55 MarkDuplicates Tracking 239312 as yet unmatched pairs. 12458 records in RAM. INFO 2026-06-08 08:13:57 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 2s. Last read position: chr7:55,019,128 INFO 2026-06-08 08:13:57 MarkDuplicates Tracking 238182 as yet unmatched pairs. 11321 records in RAM. INFO 2026-06-08 08:13:59 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr7:67,299,328 INFO 2026-06-08 08:13:59 MarkDuplicates Tracking 237562 as yet unmatched pairs. 10690 records in RAM. INFO 2026-06-08 08:14:01 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr7:73,683,213 INFO 2026-06-08 08:14:01 MarkDuplicates Tracking 237248 as yet unmatched pairs. 10373 records in RAM. INFO 2026-06-08 08:14:03 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 2s. Last read position: chr7:75,196,641 INFO 2026-06-08 08:14:03 MarkDuplicates Tracking 236875 as yet unmatched pairs. 9998 records in RAM. INFO 2026-06-08 08:14:05 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr7:76,455,677 INFO 2026-06-08 08:14:05 MarkDuplicates Tracking 236114 as yet unmatched pairs. 9236 records in RAM. INFO 2026-06-08 08:14:06 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr7:91,045,926 INFO 2026-06-08 08:14:06 MarkDuplicates Tracking 235747 as yet unmatched pairs. 8863 records in RAM. INFO 2026-06-08 08:14:09 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 2s. Last read position: chr7:94,400,247 INFO 2026-06-08 08:14:09 MarkDuplicates Tracking 235781 as yet unmatched pairs. 8895 records in RAM. INFO 2026-06-08 08:14:11 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 2s. Last read position: chr7:94,417,767 INFO 2026-06-08 08:14:11 MarkDuplicates Tracking 234785 as yet unmatched pairs. 7899 records in RAM. INFO 2026-06-08 08:14:13 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 2s. Last read position: chr7:94,545,678 INFO 2026-06-08 08:14:13 MarkDuplicates Tracking 233755 as yet unmatched pairs. 6869 records in RAM. INFO 2026-06-08 08:14:15 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr7:100,096,072 INFO 2026-06-08 08:14:15 MarkDuplicates Tracking 233128 as yet unmatched pairs. 6234 records in RAM. INFO 2026-06-08 08:14:17 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr7:100,888,296 INFO 2026-06-08 08:14:17 MarkDuplicates Tracking 232490 as yet unmatched pairs. 5595 records in RAM. INFO 2026-06-08 08:14:19 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr7:102,541,251 INFO 2026-06-08 08:14:19 MarkDuplicates Tracking 232206 as yet unmatched pairs. 5308 records in RAM. INFO 2026-06-08 08:14:20 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr7:102,656,442 INFO 2026-06-08 08:14:20 MarkDuplicates Tracking 231940 as yet unmatched pairs. 5042 records in RAM. INFO 2026-06-08 08:14:22 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr7:108,564,755 INFO 2026-06-08 08:14:22 MarkDuplicates Tracking 231206 as yet unmatched pairs. 4304 records in RAM. INFO 2026-06-08 08:14:24 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 2s. Last read position: chr7:127,704,868 INFO 2026-06-08 08:14:24 MarkDuplicates Tracking 231045 as yet unmatched pairs. 4136 records in RAM. INFO 2026-06-08 08:14:26 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 1s. Last read position: chr7:131,510,949 INFO 2026-06-08 08:14:26 MarkDuplicates Tracking 230072 as yet unmatched pairs. 3161 records in RAM. INFO 2026-06-08 08:14:27 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr7:138,554,849 INFO 2026-06-08 08:14:27 MarkDuplicates Tracking 229671 as yet unmatched pairs. 2756 records in RAM. INFO 2026-06-08 08:14:29 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr7:143,382,834 INFO 2026-06-08 08:14:29 MarkDuplicates Tracking 229467 as yet unmatched pairs. 2552 records in RAM. INFO 2026-06-08 08:14:31 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr7:149,011,885 INFO 2026-06-08 08:14:31 MarkDuplicates Tracking 228588 as yet unmatched pairs. 1673 records in RAM. INFO 2026-06-08 08:14:33 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 1s. Last read position: chr7:151,240,409 INFO 2026-06-08 08:14:33 MarkDuplicates Tracking 227642 as yet unmatched pairs. 724 records in RAM. INFO 2026-06-08 08:14:35 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 1s. Last read position: chr7:158,941,961 INFO 2026-06-08 08:14:35 MarkDuplicates Tracking 226945 as yet unmatched pairs. 23 records in RAM. INFO 2026-06-08 08:14:37 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 2s. Last read position: chr8:12,537,190 INFO 2026-06-08 08:14:37 MarkDuplicates Tracking 226390 as yet unmatched pairs. 13161 records in RAM. INFO 2026-06-08 08:14:39 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 2s. Last read position: chr8:22,291,523 INFO 2026-06-08 08:14:39 MarkDuplicates Tracking 225821 as yet unmatched pairs. 12586 records in RAM. INFO 2026-06-08 08:14:41 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 2s. Last read position: chr8:26,291,783 INFO 2026-06-08 08:14:41 MarkDuplicates Tracking 225222 as yet unmatched pairs. 11982 records in RAM. INFO 2026-06-08 08:14:44 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 2s. Last read position: chr8:32,727,947 INFO 2026-06-08 08:14:44 MarkDuplicates Tracking 224629 as yet unmatched pairs. 11386 records in RAM. INFO 2026-06-08 08:14:46 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 2s. Last read position: chr8:38,457,376 INFO 2026-06-08 08:14:46 MarkDuplicates Tracking 224539 as yet unmatched pairs. 11293 records in RAM. INFO 2026-06-08 08:14:48 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 2s. Last read position: chr8:47,732,136 INFO 2026-06-08 08:14:48 MarkDuplicates Tracking 223219 as yet unmatched pairs. 9969 records in RAM. INFO 2026-06-08 08:14:50 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 2s. Last read position: chr8:64,591,993 INFO 2026-06-08 08:14:50 MarkDuplicates Tracking 222495 as yet unmatched pairs. 9242 records in RAM. INFO 2026-06-08 08:14:52 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 2s. Last read position: chr8:73,422,657 INFO 2026-06-08 08:14:52 MarkDuplicates Tracking 221955 as yet unmatched pairs. 8701 records in RAM. INFO 2026-06-08 08:14:54 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr8:94,643,326 INFO 2026-06-08 08:14:54 MarkDuplicates Tracking 221618 as yet unmatched pairs. 8358 records in RAM. INFO 2026-06-08 08:14:56 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 2s. Last read position: chr8:101,633,626 INFO 2026-06-08 08:14:56 MarkDuplicates Tracking 220710 as yet unmatched pairs. 7447 records in RAM. INFO 2026-06-08 08:14:58 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 2s. Last read position: chr8:115,587,502 INFO 2026-06-08 08:14:58 MarkDuplicates Tracking 220345 as yet unmatched pairs. 7078 records in RAM. INFO 2026-06-08 08:15:00 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 2s. Last read position: chr8:123,645,781 INFO 2026-06-08 08:15:00 MarkDuplicates Tracking 219579 as yet unmatched pairs. 6300 records in RAM. INFO 2026-06-08 08:15:03 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 2s. Last read position: chr8:133,264,569 INFO 2026-06-08 08:15:03 MarkDuplicates Tracking 219291 as yet unmatched pairs. 6005 records in RAM. INFO 2026-06-08 08:15:05 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 2s. Last read position: chr8:143,559,532 INFO 2026-06-08 08:15:05 MarkDuplicates Tracking 218225 as yet unmatched pairs. 4927 records in RAM. INFO 2026-06-08 08:15:08 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 2s. Last read position: chr8:143,858,419 INFO 2026-06-08 08:15:08 MarkDuplicates Tracking 217482 as yet unmatched pairs. 4183 records in RAM. INFO 2026-06-08 08:15:09 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,618 INFO 2026-06-08 08:15:09 MarkDuplicates Tracking 218282 as yet unmatched pairs. 4982 records in RAM. INFO 2026-06-08 08:15:11 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,606 INFO 2026-06-08 08:15:11 MarkDuplicates Tracking 218004 as yet unmatched pairs. 4704 records in RAM. INFO 2026-06-08 08:15:12 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,720 INFO 2026-06-08 08:15:12 MarkDuplicates Tracking 217927 as yet unmatched pairs. 4615 records in RAM. INFO 2026-06-08 08:15:14 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr8:143,868,066 INFO 2026-06-08 08:15:14 MarkDuplicates Tracking 216545 as yet unmatched pairs. 3232 records in RAM. INFO 2026-06-08 08:15:15 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr8:143,922,506 INFO 2026-06-08 08:15:15 MarkDuplicates Tracking 215514 as yet unmatched pairs. 2201 records in RAM. INFO 2026-06-08 08:15:17 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr8:144,082,672 INFO 2026-06-08 08:15:17 MarkDuplicates Tracking 214673 as yet unmatched pairs. 1355 records in RAM. INFO 2026-06-08 08:15:19 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr8:144,506,833 INFO 2026-06-08 08:15:19 MarkDuplicates Tracking 213690 as yet unmatched pairs. 367 records in RAM. INFO 2026-06-08 08:15:22 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 2s. Last read position: chr9:4,286,076 INFO 2026-06-08 08:15:22 MarkDuplicates Tracking 213022 as yet unmatched pairs. 11983 records in RAM. INFO 2026-06-08 08:15:23 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr9:14,088,266 INFO 2026-06-08 08:15:23 MarkDuplicates Tracking 213541 as yet unmatched pairs. 12500 records in RAM. INFO 2026-06-08 08:15:25 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 2s. Last read position: chr9:20,912,874 INFO 2026-06-08 08:15:25 MarkDuplicates Tracking 211889 as yet unmatched pairs. 10842 records in RAM. INFO 2026-06-08 08:15:28 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 2s. Last read position: chr9:34,255,987 INFO 2026-06-08 08:15:28 MarkDuplicates Tracking 211139 as yet unmatched pairs. 10090 records in RAM. INFO 2026-06-08 08:15:30 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 2s. Last read position: chr9:35,748,545 INFO 2026-06-08 08:15:30 MarkDuplicates Tracking 210459 as yet unmatched pairs. 9409 records in RAM. INFO 2026-06-08 08:15:32 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 2s. Last read position: chr9:71,729,888 INFO 2026-06-08 08:15:32 MarkDuplicates Tracking 210107 as yet unmatched pairs. 8971 records in RAM. INFO 2026-06-08 08:15:34 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 2s. Last read position: chr9:87,729,618 INFO 2026-06-08 08:15:34 MarkDuplicates Tracking 209451 as yet unmatched pairs. 8309 records in RAM. INFO 2026-06-08 08:15:36 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 2s. Last read position: chr9:96,004,636 INFO 2026-06-08 08:15:36 MarkDuplicates Tracking 208783 as yet unmatched pairs. 7638 records in RAM. INFO 2026-06-08 08:15:39 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 2s. Last read position: chr9:106,928,198 INFO 2026-06-08 08:15:39 MarkDuplicates Tracking 208127 as yet unmatched pairs. 6976 records in RAM. INFO 2026-06-08 08:15:41 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 2s. Last read position: chr9:114,269,254 INFO 2026-06-08 08:15:41 MarkDuplicates Tracking 207400 as yet unmatched pairs. 6246 records in RAM. INFO 2026-06-08 08:15:43 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 2s. Last read position: chr9:121,310,710 INFO 2026-06-08 08:15:43 MarkDuplicates Tracking 206803 as yet unmatched pairs. 5647 records in RAM. INFO 2026-06-08 08:16:53 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 70s. Last read position: chr9:127,505,879 INFO 2026-06-08 08:16:53 MarkDuplicates Tracking 206111 as yet unmatched pairs. 4950 records in RAM. INFO 2026-06-08 08:16:55 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 2s. Last read position: chr9:128,608,033 INFO 2026-06-08 08:16:55 MarkDuplicates Tracking 205399 as yet unmatched pairs. 4238 records in RAM. INFO 2026-06-08 08:16:57 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 2s. Last read position: chr9:130,884,978 INFO 2026-06-08 08:16:57 MarkDuplicates Tracking 204822 as yet unmatched pairs. 3659 records in RAM. INFO 2026-06-08 08:17:00 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 2s. Last read position: chr9:133,414,749 INFO 2026-06-08 08:17:00 MarkDuplicates Tracking 204007 as yet unmatched pairs. 2838 records in RAM. INFO 2026-06-08 08:17:02 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 2s. Last read position: chr9:134,814,851 INFO 2026-06-08 08:17:02 MarkDuplicates Tracking 203509 as yet unmatched pairs. 2339 records in RAM. INFO 2026-06-08 08:17:04 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr9:136,515,377 INFO 2026-06-08 08:17:04 MarkDuplicates Tracking 202356 as yet unmatched pairs. 1185 records in RAM. INFO 2026-06-08 08:17:06 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 2s. Last read position: chr9:137,543,466 INFO 2026-06-08 08:17:06 MarkDuplicates Tracking 201400 as yet unmatched pairs. 225 records in RAM. INFO 2026-06-08 08:17:08 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 2s. Last read position: chr10:5,749,189 INFO 2026-06-08 08:17:08 MarkDuplicates Tracking 200671 as yet unmatched pairs. 9659 records in RAM. INFO 2026-06-08 08:17:10 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 2s. Last read position: chr10:16,754,871 INFO 2026-06-08 08:17:10 MarkDuplicates Tracking 200087 as yet unmatched pairs. 9069 records in RAM. INFO 2026-06-08 08:17:12 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 2s. Last read position: chr10:24,523,651 INFO 2026-06-08 08:17:12 MarkDuplicates Tracking 199318 as yet unmatched pairs. 8299 records in RAM. INFO 2026-06-08 08:17:15 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 2s. Last read position: chr10:29,523,569 INFO 2026-06-08 08:17:15 MarkDuplicates Tracking 199052 as yet unmatched pairs. 8032 records in RAM. INFO 2026-06-08 08:17:17 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr10:32,910,223 INFO 2026-06-08 08:17:17 MarkDuplicates Tracking 198262 as yet unmatched pairs. 7239 records in RAM. INFO 2026-06-08 08:17:18 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr10:45,699,470 INFO 2026-06-08 08:17:18 MarkDuplicates Tracking 197534 as yet unmatched pairs. 6503 records in RAM. INFO 2026-06-08 08:17:20 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr10:51,153,298 INFO 2026-06-08 08:17:20 MarkDuplicates Tracking 197093 as yet unmatched pairs. 6059 records in RAM. INFO 2026-06-08 08:17:22 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr10:68,044,494 INFO 2026-06-08 08:17:22 MarkDuplicates Tracking 196562 as yet unmatched pairs. 5525 records in RAM. INFO 2026-06-08 08:17:24 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 2s. Last read position: chr10:73,499,124 INFO 2026-06-08 08:17:24 MarkDuplicates Tracking 195984 as yet unmatched pairs. 4946 records in RAM. INFO 2026-06-08 08:17:26 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr10:78,035,583 INFO 2026-06-08 08:17:26 MarkDuplicates Tracking 195339 as yet unmatched pairs. 4298 records in RAM. INFO 2026-06-08 08:17:28 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr10:88,935,240 INFO 2026-06-08 08:17:28 MarkDuplicates Tracking 195031 as yet unmatched pairs. 3974 records in RAM. INFO 2026-06-08 08:17:30 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 2s. Last read position: chr10:95,432,509 INFO 2026-06-08 08:17:30 MarkDuplicates Tracking 194272 as yet unmatched pairs. 3214 records in RAM. INFO 2026-06-08 08:17:31 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr10:100,987,097 INFO 2026-06-08 08:17:31 MarkDuplicates Tracking 193551 as yet unmatched pairs. 2488 records in RAM. INFO 2026-06-08 08:17:33 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr10:103,602,085 INFO 2026-06-08 08:17:33 MarkDuplicates Tracking 193052 as yet unmatched pairs. 1987 records in RAM. INFO 2026-06-08 08:17:35 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 2s. Last read position: chr10:119,038,284 INFO 2026-06-08 08:17:35 MarkDuplicates Tracking 192234 as yet unmatched pairs. 1152 records in RAM. INFO 2026-06-08 08:17:37 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 2s. Last read position: chr10:125,823,575 INFO 2026-06-08 08:17:37 MarkDuplicates Tracking 191553 as yet unmatched pairs. 471 records in RAM. INFO 2026-06-08 08:17:39 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:289,852 INFO 2026-06-08 08:17:39 MarkDuplicates Tracking 192083 as yet unmatched pairs. 21000 records in RAM. INFO 2026-06-08 08:17:41 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 2s. Last read position: chr11:314,276 INFO 2026-06-08 08:17:41 MarkDuplicates Tracking 191293 as yet unmatched pairs. 20207 records in RAM. INFO 2026-06-08 08:17:43 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr11:403,142 INFO 2026-06-08 08:17:43 MarkDuplicates Tracking 189411 as yet unmatched pairs. 18323 records in RAM. INFO 2026-06-08 08:17:45 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr11:986,922 INFO 2026-06-08 08:17:45 MarkDuplicates Tracking 188555 as yet unmatched pairs. 17467 records in RAM. INFO 2026-06-08 08:17:47 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:1,250,191 INFO 2026-06-08 08:17:47 MarkDuplicates Tracking 188462 as yet unmatched pairs. 17373 records in RAM. INFO 2026-06-08 08:17:48 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:3,013,779 INFO 2026-06-08 08:17:48 MarkDuplicates Tracking 187481 as yet unmatched pairs. 16388 records in RAM. INFO 2026-06-08 08:17:50 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:6,631,090 INFO 2026-06-08 08:17:50 MarkDuplicates Tracking 186739 as yet unmatched pairs. 15645 records in RAM. INFO 2026-06-08 08:17:52 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr11:10,803,117 INFO 2026-06-08 08:17:52 MarkDuplicates Tracking 186317 as yet unmatched pairs. 15220 records in RAM. INFO 2026-06-08 08:17:54 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:18,402,984 INFO 2026-06-08 08:17:54 MarkDuplicates Tracking 185699 as yet unmatched pairs. 14598 records in RAM. INFO 2026-06-08 08:17:56 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:34,086,387 INFO 2026-06-08 08:17:56 MarkDuplicates Tracking 185141 as yet unmatched pairs. 14037 records in RAM. INFO 2026-06-08 08:17:57 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr11:46,310,056 INFO 2026-06-08 08:17:57 MarkDuplicates Tracking 184683 as yet unmatched pairs. 13574 records in RAM. INFO 2026-06-08 08:17:59 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr11:47,767,078 INFO 2026-06-08 08:17:59 MarkDuplicates Tracking 184050 as yet unmatched pairs. 12937 records in RAM. INFO 2026-06-08 08:18:01 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr11:57,802,099 INFO 2026-06-08 08:18:01 MarkDuplicates Tracking 183260 as yet unmatched pairs. 12147 records in RAM. INFO 2026-06-08 08:18:03 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 2s. Last read position: chr11:61,840,334 INFO 2026-06-08 08:18:03 MarkDuplicates Tracking 182863 as yet unmatched pairs. 11702 records in RAM. INFO 2026-06-08 08:18:05 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr11:62,530,097 INFO 2026-06-08 08:18:05 MarkDuplicates Tracking 182274 as yet unmatched pairs. 11112 records in RAM. INFO 2026-06-08 08:18:07 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr11:63,750,175 INFO 2026-06-08 08:18:07 MarkDuplicates Tracking 181479 as yet unmatched pairs. 10316 records in RAM. INFO 2026-06-08 08:18:09 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 2s. Last read position: chr11:64,935,295 INFO 2026-06-08 08:18:09 MarkDuplicates Tracking 180609 as yet unmatched pairs. 9445 records in RAM. INFO 2026-06-08 08:18:11 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 2s. Last read position: chr11:65,502,248 INFO 2026-06-08 08:18:11 MarkDuplicates Tracking 180217 as yet unmatched pairs. 9047 records in RAM. INFO 2026-06-08 08:18:13 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr11:65,641,049 INFO 2026-06-08 08:18:13 MarkDuplicates Tracking 178969 as yet unmatched pairs. 7798 records in RAM. INFO 2026-06-08 08:18:15 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr11:66,315,801 INFO 2026-06-08 08:18:15 MarkDuplicates Tracking 178211 as yet unmatched pairs. 7037 records in RAM. INFO 2026-06-08 08:18:17 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr11:67,497,177 INFO 2026-06-08 08:18:17 MarkDuplicates Tracking 177342 as yet unmatched pairs. 6163 records in RAM. INFO 2026-06-08 08:18:18 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr11:70,407,360 INFO 2026-06-08 08:18:18 MarkDuplicates Tracking 176623 as yet unmatched pairs. 5441 records in RAM. INFO 2026-06-08 08:18:20 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr11:73,297,159 INFO 2026-06-08 08:18:20 MarkDuplicates Tracking 175832 as yet unmatched pairs. 4650 records in RAM. INFO 2026-06-08 08:18:22 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr11:76,665,881 INFO 2026-06-08 08:18:22 MarkDuplicates Tracking 175089 as yet unmatched pairs. 3907 records in RAM. INFO 2026-06-08 08:18:23 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr11:88,509,188 INFO 2026-06-08 08:18:23 MarkDuplicates Tracking 174400 as yet unmatched pairs. 3212 records in RAM. INFO 2026-06-08 08:18:25 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr11:102,349,862 INFO 2026-06-08 08:18:25 MarkDuplicates Tracking 173953 as yet unmatched pairs. 2759 records in RAM. INFO 2026-06-08 08:18:27 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr11:114,312,113 INFO 2026-06-08 08:18:27 MarkDuplicates Tracking 173371 as yet unmatched pairs. 2175 records in RAM. INFO 2026-06-08 08:18:29 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr11:118,627,852 INFO 2026-06-08 08:18:29 MarkDuplicates Tracking 173301 as yet unmatched pairs. 2104 records in RAM. INFO 2026-06-08 08:18:30 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr11:121,045,694 INFO 2026-06-08 08:18:30 MarkDuplicates Tracking 171981 as yet unmatched pairs. 782 records in RAM. INFO 2026-06-08 08:18:32 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr11:130,196,418 INFO 2026-06-08 08:18:32 MarkDuplicates Tracking 171410 as yet unmatched pairs. 199 records in RAM. INFO 2026-06-08 08:18:34 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 2s. Last read position: chr12:2,830,289 INFO 2026-06-08 08:18:34 MarkDuplicates Tracking 170759 as yet unmatched pairs. 13799 records in RAM. INFO 2026-06-08 08:18:36 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:6,891,822 INFO 2026-06-08 08:18:36 MarkDuplicates Tracking 170053 as yet unmatched pairs. 13087 records in RAM. INFO 2026-06-08 08:18:38 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 2s. Last read position: chr12:8,214,396 INFO 2026-06-08 08:18:38 MarkDuplicates Tracking 169391 as yet unmatched pairs. 12415 records in RAM. INFO 2026-06-08 08:18:40 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 2s. Last read position: chr12:13,214,594 INFO 2026-06-08 08:18:40 MarkDuplicates Tracking 168873 as yet unmatched pairs. 11896 records in RAM. INFO 2026-06-08 08:18:42 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr12:27,370,186 INFO 2026-06-08 08:18:42 MarkDuplicates Tracking 168350 as yet unmatched pairs. 11371 records in RAM. INFO 2026-06-08 08:18:44 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:46,361,099 INFO 2026-06-08 08:18:44 MarkDuplicates Tracking 167816 as yet unmatched pairs. 10835 records in RAM. INFO 2026-06-08 08:18:46 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr12:49,101,270 INFO 2026-06-08 08:18:46 MarkDuplicates Tracking 167032 as yet unmatched pairs. 10051 records in RAM. INFO 2026-06-08 08:18:48 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr12:50,992,848 INFO 2026-06-08 08:18:48 MarkDuplicates Tracking 166437 as yet unmatched pairs. 9456 records in RAM. INFO 2026-06-08 08:18:49 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr12:53,383,315 INFO 2026-06-08 08:18:49 MarkDuplicates Tracking 165830 as yet unmatched pairs. 8848 records in RAM. INFO 2026-06-08 08:18:51 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr12:56,104,724 INFO 2026-06-08 08:18:51 MarkDuplicates Tracking 165208 as yet unmatched pairs. 8216 records in RAM. INFO 2026-06-08 08:18:53 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr12:56,716,187 INFO 2026-06-08 08:18:53 MarkDuplicates Tracking 164556 as yet unmatched pairs. 7564 records in RAM. INFO 2026-06-08 08:18:55 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr12:57,183,812 INFO 2026-06-08 08:18:55 MarkDuplicates Tracking 163826 as yet unmatched pairs. 6833 records in RAM. INFO 2026-06-08 08:18:57 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr12:57,716,487 INFO 2026-06-08 08:18:57 MarkDuplicates Tracking 163279 as yet unmatched pairs. 6286 records in RAM. INFO 2026-06-08 08:18:58 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr12:69,239,668 INFO 2026-06-08 08:18:58 MarkDuplicates Tracking 162502 as yet unmatched pairs. 5501 records in RAM. INFO 2026-06-08 08:19:00 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr12:91,108,852 INFO 2026-06-08 08:19:00 MarkDuplicates Tracking 162805 as yet unmatched pairs. 5794 records in RAM. INFO 2026-06-08 08:19:02 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr12:101,726,247 INFO 2026-06-08 08:19:02 MarkDuplicates Tracking 161436 as yet unmatched pairs. 4425 records in RAM. INFO 2026-06-08 08:19:04 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 2s. Last read position: chr12:108,645,426 INFO 2026-06-08 08:19:04 MarkDuplicates Tracking 160777 as yet unmatched pairs. 3765 records in RAM. INFO 2026-06-08 08:19:06 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr12:112,267,177 INFO 2026-06-08 08:19:06 MarkDuplicates Tracking 160135 as yet unmatched pairs. 3120 records in RAM. INFO 2026-06-08 08:19:08 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr12:117,761,240 INFO 2026-06-08 08:19:08 MarkDuplicates Tracking 159494 as yet unmatched pairs. 2476 records in RAM. INFO 2026-06-08 08:19:10 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr12:121,823,131 INFO 2026-06-08 08:19:10 MarkDuplicates Tracking 158879 as yet unmatched pairs. 1858 records in RAM. INFO 2026-06-08 08:19:12 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 2s. Last read position: chr12:124,343,184 INFO 2026-06-08 08:19:12 MarkDuplicates Tracking 158492 as yet unmatched pairs. 1470 records in RAM. INFO 2026-06-08 08:19:14 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr12:132,570,524 INFO 2026-06-08 08:19:14 MarkDuplicates Tracking 157513 as yet unmatched pairs. 489 records in RAM. INFO 2026-06-08 08:19:15 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr13:20,721,694 INFO 2026-06-08 08:19:15 MarkDuplicates Tracking 156729 as yet unmatched pairs. 3901 records in RAM. INFO 2026-06-08 08:19:17 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr13:32,658,316 INFO 2026-06-08 08:19:17 MarkDuplicates Tracking 156156 as yet unmatched pairs. 3323 records in RAM. INFO 2026-06-08 08:19:19 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr13:41,719,596 INFO 2026-06-08 08:19:19 MarkDuplicates Tracking 155569 as yet unmatched pairs. 2734 records in RAM. INFO 2026-06-08 08:19:20 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr13:51,348,250 INFO 2026-06-08 08:19:20 MarkDuplicates Tracking 154988 as yet unmatched pairs. 2151 records in RAM. INFO 2026-06-08 08:19:22 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr13:95,093,105 INFO 2026-06-08 08:19:22 MarkDuplicates Tracking 154491 as yet unmatched pairs. 1646 records in RAM. INFO 2026-06-08 08:19:24 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr13:109,784,616 INFO 2026-06-08 08:19:24 MarkDuplicates Tracking 153745 as yet unmatched pairs. 899 records in RAM. INFO 2026-06-08 08:19:26 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr13:113,623,195 INFO 2026-06-08 08:19:26 MarkDuplicates Tracking 153078 as yet unmatched pairs. 231 records in RAM. INFO 2026-06-08 08:19:28 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr14:22,575,078 INFO 2026-06-08 08:19:28 MarkDuplicates Tracking 152451 as yet unmatched pairs. 7729 records in RAM. INFO 2026-06-08 08:19:29 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr14:24,155,616 INFO 2026-06-08 08:19:29 MarkDuplicates Tracking 151663 as yet unmatched pairs. 6940 records in RAM. INFO 2026-06-08 08:19:31 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr14:34,546,736 INFO 2026-06-08 08:19:31 MarkDuplicates Tracking 150927 as yet unmatched pairs. 6200 records in RAM. INFO 2026-06-08 08:19:33 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,719 INFO 2026-06-08 08:19:33 MarkDuplicates Tracking 151207 as yet unmatched pairs. 6479 records in RAM. INFO 2026-06-08 08:19:34 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr14:50,440,437 INFO 2026-06-08 08:19:34 MarkDuplicates Tracking 150310 as yet unmatched pairs. 5577 records in RAM. INFO 2026-06-08 08:19:36 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 2s. Last read position: chr14:58,645,809 INFO 2026-06-08 08:19:36 MarkDuplicates Tracking 149651 as yet unmatched pairs. 4918 records in RAM. INFO 2026-06-08 08:19:39 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 2s. Last read position: chr14:67,807,907 INFO 2026-06-08 08:19:39 MarkDuplicates Tracking 149104 as yet unmatched pairs. 4367 records in RAM. INFO 2026-06-08 08:19:41 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr14:71,686,807 INFO 2026-06-08 08:19:41 MarkDuplicates Tracking 148520 as yet unmatched pairs. 3777 records in RAM. INFO 2026-06-08 08:19:42 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr14:75,135,828 INFO 2026-06-08 08:19:42 MarkDuplicates Tracking 147851 as yet unmatched pairs. 3105 records in RAM. INFO 2026-06-08 08:19:44 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr14:91,765,892 INFO 2026-06-08 08:19:44 MarkDuplicates Tracking 147191 as yet unmatched pairs. 2435 records in RAM. INFO 2026-06-08 08:19:46 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr14:100,009,490 INFO 2026-06-08 08:19:46 MarkDuplicates Tracking 146662 as yet unmatched pairs. 1847 records in RAM. INFO 2026-06-08 08:19:48 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr14:103,133,682 INFO 2026-06-08 08:19:48 MarkDuplicates Tracking 146071 as yet unmatched pairs. 1255 records in RAM. INFO 2026-06-08 08:19:49 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr14:104,947,969 INFO 2026-06-08 08:19:49 MarkDuplicates Tracking 145402 as yet unmatched pairs. 586 records in RAM. INFO 2026-06-08 08:19:51 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr15:25,008,541 INFO 2026-06-08 08:19:51 MarkDuplicates Tracking 144651 as yet unmatched pairs. 9791 records in RAM. INFO 2026-06-08 08:19:53 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr15:32,731,864 INFO 2026-06-08 08:19:53 MarkDuplicates Tracking 144302 as yet unmatched pairs. 9435 records in RAM. INFO 2026-06-08 08:19:55 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr15:39,583,680 INFO 2026-06-08 08:19:55 MarkDuplicates Tracking 143873 as yet unmatched pairs. 9003 records in RAM. INFO 2026-06-08 08:19:56 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr15:40,854,469 INFO 2026-06-08 08:19:56 MarkDuplicates Tracking 143014 as yet unmatched pairs. 8144 records in RAM. INFO 2026-06-08 08:19:58 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr15:43,420,524 INFO 2026-06-08 08:19:58 MarkDuplicates Tracking 142323 as yet unmatched pairs. 7448 records in RAM. INFO 2026-06-08 08:20:00 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 2s. Last read position: chr15:45,178,215 INFO 2026-06-08 08:20:00 MarkDuplicates Tracking 141619 as yet unmatched pairs. 6744 records in RAM. INFO 2026-06-08 08:20:02 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr15:50,481,487 INFO 2026-06-08 08:20:02 MarkDuplicates Tracking 141038 as yet unmatched pairs. 6163 records in RAM. INFO 2026-06-08 08:20:04 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 2s. Last read position: chr15:58,771,497 INFO 2026-06-08 08:20:04 MarkDuplicates Tracking 140478 as yet unmatched pairs. 5588 records in RAM. INFO 2026-06-08 08:20:06 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 2s. Last read position: chr15:63,678,315 INFO 2026-06-08 08:20:06 MarkDuplicates Tracking 139916 as yet unmatched pairs. 5026 records in RAM. INFO 2026-06-08 08:20:08 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr15:68,303,813 INFO 2026-06-08 08:20:08 MarkDuplicates Tracking 139332 as yet unmatched pairs. 4434 records in RAM. INFO 2026-06-08 08:20:10 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr15:73,273,948 INFO 2026-06-08 08:20:10 MarkDuplicates Tracking 138593 as yet unmatched pairs. 3695 records in RAM. INFO 2026-06-08 08:20:12 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr15:74,044,260 INFO 2026-06-08 08:20:12 MarkDuplicates Tracking 137892 as yet unmatched pairs. 2990 records in RAM. INFO 2026-06-08 08:20:13 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr15:77,179,279 INFO 2026-06-08 08:20:13 MarkDuplicates Tracking 136985 as yet unmatched pairs. 2079 records in RAM. INFO 2026-06-08 08:20:15 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr15:84,354,328 INFO 2026-06-08 08:20:15 MarkDuplicates Tracking 136393 as yet unmatched pairs. 1485 records in RAM. INFO 2026-06-08 08:20:16 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr15:89,333,649 INFO 2026-06-08 08:20:16 MarkDuplicates Tracking 135816 as yet unmatched pairs. 908 records in RAM. INFO 2026-06-08 08:20:18 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr15:99,645,723 INFO 2026-06-08 08:20:18 MarkDuplicates Tracking 135107 as yet unmatched pairs. 188 records in RAM. INFO 2026-06-08 08:20:20 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr16:634,888 INFO 2026-06-08 08:20:20 MarkDuplicates Tracking 134431 as yet unmatched pairs. 19035 records in RAM. INFO 2026-06-08 08:20:22 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr16:1,668,087 INFO 2026-06-08 08:20:22 MarkDuplicates Tracking 133432 as yet unmatched pairs. 18036 records in RAM. INFO 2026-06-08 08:20:24 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr16:2,109,475 INFO 2026-06-08 08:20:24 MarkDuplicates Tracking 132654 as yet unmatched pairs. 17258 records in RAM. INFO 2026-06-08 08:20:25 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr16:2,762,059 INFO 2026-06-08 08:20:25 MarkDuplicates Tracking 132017 as yet unmatched pairs. 16620 records in RAM. INFO 2026-06-08 08:20:28 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 2s. Last read position: chr16:3,022,825 INFO 2026-06-08 08:20:28 MarkDuplicates Tracking 131678 as yet unmatched pairs. 16281 records in RAM. INFO 2026-06-08 08:20:30 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 2s. Last read position: chr16:4,360,946 INFO 2026-06-08 08:20:30 MarkDuplicates Tracking 130431 as yet unmatched pairs. 15029 records in RAM. INFO 2026-06-08 08:20:32 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr16:11,024,849 INFO 2026-06-08 08:20:32 MarkDuplicates Tracking 129680 as yet unmatched pairs. 14274 records in RAM. INFO 2026-06-08 08:20:33 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr16:14,882,598 INFO 2026-06-08 08:20:33 MarkDuplicates Tracking 129244 as yet unmatched pairs. 13837 records in RAM. INFO 2026-06-08 08:20:35 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr16:15,598,868 INFO 2026-06-08 08:20:35 MarkDuplicates Tracking 128973 as yet unmatched pairs. 13566 records in RAM. INFO 2026-06-08 08:20:36 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr16:16,357,437 INFO 2026-06-08 08:20:36 MarkDuplicates Tracking 128720 as yet unmatched pairs. 13312 records in RAM. INFO 2026-06-08 08:20:38 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr16:18,382,003 INFO 2026-06-08 08:20:38 MarkDuplicates Tracking 128494 as yet unmatched pairs. 13086 records in RAM. INFO 2026-06-08 08:20:39 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr16:19,507,687 INFO 2026-06-08 08:20:39 MarkDuplicates Tracking 127808 as yet unmatched pairs. 12400 records in RAM. INFO 2026-06-08 08:20:40 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr16:21,415,069 INFO 2026-06-08 08:20:40 MarkDuplicates Tracking 127763 as yet unmatched pairs. 12354 records in RAM. INFO 2026-06-08 08:20:42 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr16:21,837,680 INFO 2026-06-08 08:20:42 MarkDuplicates Tracking 127396 as yet unmatched pairs. 11986 records in RAM. INFO 2026-06-08 08:20:43 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:22,527,955 INFO 2026-06-08 08:20:43 MarkDuplicates Tracking 127135 as yet unmatched pairs. 11725 records in RAM. INFO 2026-06-08 08:20:45 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:23,424,932 INFO 2026-06-08 08:20:45 MarkDuplicates Tracking 126878 as yet unmatched pairs. 11468 records in RAM. INFO 2026-06-08 08:20:46 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:28,538,795 INFO 2026-06-08 08:20:46 MarkDuplicates Tracking 126287 as yet unmatched pairs. 10876 records in RAM. INFO 2026-06-08 08:20:48 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:29,384,183 INFO 2026-06-08 08:20:48 MarkDuplicates Tracking 125988 as yet unmatched pairs. 10577 records in RAM. INFO 2026-06-08 08:20:49 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:29,528,441 INFO 2026-06-08 08:20:49 MarkDuplicates Tracking 125654 as yet unmatched pairs. 10243 records in RAM. INFO 2026-06-08 08:20:51 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:30,118,399 INFO 2026-06-08 08:20:51 MarkDuplicates Tracking 124968 as yet unmatched pairs. 9557 records in RAM. INFO 2026-06-08 08:20:52 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:30,429,881 INFO 2026-06-08 08:20:52 MarkDuplicates Tracking 124590 as yet unmatched pairs. 9177 records in RAM. INFO 2026-06-08 08:20:54 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:30,979,686 INFO 2026-06-08 08:20:54 MarkDuplicates Tracking 123959 as yet unmatched pairs. 8542 records in RAM. INFO 2026-06-08 08:20:56 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 2s. Last read position: chr16:34,160,773 INFO 2026-06-08 08:20:56 MarkDuplicates Tracking 123184 as yet unmatched pairs. 7766 records in RAM. INFO 2026-06-08 08:20:58 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr16:53,686,454 INFO 2026-06-08 08:20:58 MarkDuplicates Tracking 122614 as yet unmatched pairs. 7191 records in RAM. INFO 2026-06-08 08:21:00 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr16:57,051,538 INFO 2026-06-08 08:21:00 MarkDuplicates Tracking 121973 as yet unmatched pairs. 6549 records in RAM. INFO 2026-06-08 08:21:02 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:64,982,144 INFO 2026-06-08 08:21:02 MarkDuplicates Tracking 121269 as yet unmatched pairs. 5845 records in RAM. INFO 2026-06-08 08:21:04 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr16:67,538,491 INFO 2026-06-08 08:21:04 MarkDuplicates Tracking 120544 as yet unmatched pairs. 5120 records in RAM. INFO 2026-06-08 08:21:05 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr16:68,695,308 INFO 2026-06-08 08:21:05 MarkDuplicates Tracking 120078 as yet unmatched pairs. 4652 records in RAM. INFO 2026-06-08 08:21:07 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr16:70,474,852 INFO 2026-06-08 08:21:07 MarkDuplicates Tracking 119279 as yet unmatched pairs. 3852 records in RAM. INFO 2026-06-08 08:21:08 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr16:72,959,684 INFO 2026-06-08 08:21:08 MarkDuplicates Tracking 118567 as yet unmatched pairs. 3138 records in RAM. INFO 2026-06-08 08:21:10 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr16:81,543,329 INFO 2026-06-08 08:21:10 MarkDuplicates Tracking 117922 as yet unmatched pairs. 2493 records in RAM. INFO 2026-06-08 08:21:12 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr16:87,702,151 INFO 2026-06-08 08:21:12 MarkDuplicates Tracking 117290 as yet unmatched pairs. 1852 records in RAM. INFO 2026-06-08 08:21:13 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr16:88,732,526 INFO 2026-06-08 08:21:13 MarkDuplicates Tracking 116536 as yet unmatched pairs. 1097 records in RAM. INFO 2026-06-08 08:21:15 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr16:89,907,452 INFO 2026-06-08 08:21:15 MarkDuplicates Tracking 115730 as yet unmatched pairs. 290 records in RAM. INFO 2026-06-08 08:21:17 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr17:1,681,825 INFO 2026-06-08 08:21:17 MarkDuplicates Tracking 114926 as yet unmatched pairs. 36497 records in RAM. INFO 2026-06-08 08:21:18 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr17:4,545,867 INFO 2026-06-08 08:21:18 MarkDuplicates Tracking 114202 as yet unmatched pairs. 35773 records in RAM. INFO 2026-06-08 08:21:20 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr17:7,016,525 INFO 2026-06-08 08:21:20 MarkDuplicates Tracking 113584 as yet unmatched pairs. 35154 records in RAM. INFO 2026-06-08 08:21:22 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr17:7,564,664 INFO 2026-06-08 08:21:22 MarkDuplicates Tracking 112861 as yet unmatched pairs. 34431 records in RAM. INFO 2026-06-08 08:21:24 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 2s. Last read position: chr17:10,313,248 INFO 2026-06-08 08:21:24 MarkDuplicates Tracking 112324 as yet unmatched pairs. 33890 records in RAM. INFO 2026-06-08 08:21:26 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr17:17,715,496 INFO 2026-06-08 08:21:26 MarkDuplicates Tracking 111562 as yet unmatched pairs. 33128 records in RAM. INFO 2026-06-08 08:21:27 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr17:20,205,667 INFO 2026-06-08 08:21:27 MarkDuplicates Tracking 111012 as yet unmatched pairs. 32578 records in RAM. INFO 2026-06-08 08:21:29 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr17:28,924,230 INFO 2026-06-08 08:21:29 MarkDuplicates Tracking 110361 as yet unmatched pairs. 31927 records in RAM. INFO 2026-06-08 08:21:31 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 2s. Last read position: chr17:32,479,344 INFO 2026-06-08 08:21:31 MarkDuplicates Tracking 109810 as yet unmatched pairs. 31374 records in RAM. INFO 2026-06-08 08:21:33 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr17:37,585,326 INFO 2026-06-08 08:21:33 MarkDuplicates Tracking 109358 as yet unmatched pairs. 30922 records in RAM. INFO 2026-06-08 08:21:34 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr17:39,650,682 INFO 2026-06-08 08:21:34 MarkDuplicates Tracking 108869 as yet unmatched pairs. 30431 records in RAM. INFO 2026-06-08 08:21:36 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr17:40,636,400 INFO 2026-06-08 08:21:36 MarkDuplicates Tracking 108079 as yet unmatched pairs. 29639 records in RAM. INFO 2026-06-08 08:21:38 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr17:42,404,387 INFO 2026-06-08 08:21:38 MarkDuplicates Tracking 107343 as yet unmatched pairs. 28901 records in RAM. INFO 2026-06-08 08:21:39 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr17:44,349,499 INFO 2026-06-08 08:21:39 MarkDuplicates Tracking 106941 as yet unmatched pairs. 28497 records in RAM. INFO 2026-06-08 08:21:41 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr17:46,330,912 INFO 2026-06-08 08:21:41 MarkDuplicates Tracking 106075 as yet unmatched pairs. 27629 records in RAM. INFO 2026-06-08 08:21:42 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr17:49,705,874 INFO 2026-06-08 08:21:42 MarkDuplicates Tracking 105477 as yet unmatched pairs. 27031 records in RAM. INFO 2026-06-08 08:21:44 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,778 INFO 2026-06-08 08:21:44 MarkDuplicates Tracking 107142 as yet unmatched pairs. 28696 records in RAM. INFO 2026-06-08 08:21:45 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,660 INFO 2026-06-08 08:21:45 MarkDuplicates Tracking 106176 as yet unmatched pairs. 27730 records in RAM. INFO 2026-06-08 08:21:47 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,014 INFO 2026-06-08 08:21:47 MarkDuplicates Tracking 122244 as yet unmatched pairs. 43798 records in RAM. INFO 2026-06-08 08:21:49 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,495 INFO 2026-06-08 08:21:49 MarkDuplicates Tracking 116278 as yet unmatched pairs. 37832 records in RAM. INFO 2026-06-08 08:21:50 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,095 INFO 2026-06-08 08:21:50 MarkDuplicates Tracking 116960 as yet unmatched pairs. 38514 records in RAM. INFO 2026-06-08 08:21:52 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,590 INFO 2026-06-08 08:21:52 MarkDuplicates Tracking 111326 as yet unmatched pairs. 32879 records in RAM. INFO 2026-06-08 08:21:54 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,964 INFO 2026-06-08 08:21:54 MarkDuplicates Tracking 111268 as yet unmatched pairs. 32821 records in RAM. INFO 2026-06-08 08:21:57 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,450 INFO 2026-06-08 08:21:57 MarkDuplicates Tracking 110025 as yet unmatched pairs. 31578 records in RAM. INFO 2026-06-08 08:21:59 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,713 INFO 2026-06-08 08:21:59 MarkDuplicates Tracking 111817 as yet unmatched pairs. 33369 records in RAM. INFO 2026-06-08 08:22:00 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,038 INFO 2026-06-08 08:22:00 MarkDuplicates Tracking 114909 as yet unmatched pairs. 36461 records in RAM. INFO 2026-06-08 08:22:02 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,542 INFO 2026-06-08 08:22:02 MarkDuplicates Tracking 107975 as yet unmatched pairs. 29527 records in RAM. INFO 2026-06-08 08:22:04 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,414 INFO 2026-06-08 08:22:04 MarkDuplicates Tracking 108161 as yet unmatched pairs. 29713 records in RAM. INFO 2026-06-08 08:22:05 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,995 INFO 2026-06-08 08:22:05 MarkDuplicates Tracking 107983 as yet unmatched pairs. 29535 records in RAM. INFO 2026-06-08 08:22:07 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,801 INFO 2026-06-08 08:22:07 MarkDuplicates Tracking 107015 as yet unmatched pairs. 28567 records in RAM. INFO 2026-06-08 08:22:09 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,961 INFO 2026-06-08 08:22:09 MarkDuplicates Tracking 110155 as yet unmatched pairs. 31707 records in RAM. INFO 2026-06-08 08:22:10 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,173 INFO 2026-06-08 08:22:10 MarkDuplicates Tracking 113594 as yet unmatched pairs. 35146 records in RAM. INFO 2026-06-08 08:22:12 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,617 INFO 2026-06-08 08:22:12 MarkDuplicates Tracking 99632 as yet unmatched pairs. 21184 records in RAM. INFO 2026-06-08 08:22:14 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,231 INFO 2026-06-08 08:22:14 MarkDuplicates Tracking 101479 as yet unmatched pairs. 23030 records in RAM. INFO 2026-06-08 08:22:16 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,589 INFO 2026-06-08 08:22:16 MarkDuplicates Tracking 104091 as yet unmatched pairs. 25642 records in RAM. INFO 2026-06-08 08:22:17 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,154 INFO 2026-06-08 08:22:17 MarkDuplicates Tracking 101652 as yet unmatched pairs. 23203 records in RAM. INFO 2026-06-08 08:22:19 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,346 INFO 2026-06-08 08:22:19 MarkDuplicates Tracking 102470 as yet unmatched pairs. 24021 records in RAM. INFO 2026-06-08 08:22:21 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,018 INFO 2026-06-08 08:22:21 MarkDuplicates Tracking 108348 as yet unmatched pairs. 29899 records in RAM. INFO 2026-06-08 08:22:23 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,750 INFO 2026-06-08 08:22:23 MarkDuplicates Tracking 109398 as yet unmatched pairs. 30949 records in RAM. INFO 2026-06-08 08:22:25 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,439 INFO 2026-06-08 08:22:25 MarkDuplicates Tracking 99728 as yet unmatched pairs. 21279 records in RAM. INFO 2026-06-08 08:22:27 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,269 INFO 2026-06-08 08:22:27 MarkDuplicates Tracking 100659 as yet unmatched pairs. 22209 records in RAM. INFO 2026-06-08 08:22:28 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,753 INFO 2026-06-08 08:22:28 MarkDuplicates Tracking 91391 as yet unmatched pairs. 12941 records in RAM. INFO 2026-06-08 08:22:30 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 1s. Last read position: chr17:50,749,441 INFO 2026-06-08 08:22:30 MarkDuplicates Tracking 85128 as yet unmatched pairs. 6678 records in RAM. INFO 2026-06-08 08:22:32 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 1s. Last read position: chr17:59,679,500 INFO 2026-06-08 08:22:32 MarkDuplicates Tracking 84877 as yet unmatched pairs. 6425 records in RAM. INFO 2026-06-08 08:22:33 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 1s. Last read position: chr17:63,420,612 INFO 2026-06-08 08:22:33 MarkDuplicates Tracking 83898 as yet unmatched pairs. 5445 records in RAM. INFO 2026-06-08 08:22:35 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 1s. Last read position: chr17:67,194,021 INFO 2026-06-08 08:22:35 MarkDuplicates Tracking 83382 as yet unmatched pairs. 4927 records in RAM. INFO 2026-06-08 08:22:36 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 1s. Last read position: chr17:75,181,104 INFO 2026-06-08 08:22:36 MarkDuplicates Tracking 82704 as yet unmatched pairs. 4242 records in RAM. INFO 2026-06-08 08:22:38 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 1s. Last read position: chr17:76,121,592 INFO 2026-06-08 08:22:38 MarkDuplicates Tracking 81875 as yet unmatched pairs. 3413 records in RAM. INFO 2026-06-08 08:22:40 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 1s. Last read position: chr17:78,971,730 INFO 2026-06-08 08:22:40 MarkDuplicates Tracking 81218 as yet unmatched pairs. 2756 records in RAM. INFO 2026-06-08 08:22:41 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 1s. Last read position: chr17:80,346,766 INFO 2026-06-08 08:22:41 MarkDuplicates Tracking 80678 as yet unmatched pairs. 2214 records in RAM. INFO 2026-06-08 08:22:43 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 1s. Last read position: chr17:81,701,048 INFO 2026-06-08 08:22:43 MarkDuplicates Tracking 79664 as yet unmatched pairs. 1199 records in RAM. INFO 2026-06-08 08:22:45 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 2s. Last read position: chr17:82,322,935 INFO 2026-06-08 08:22:45 MarkDuplicates Tracking 78759 as yet unmatched pairs. 294 records in RAM. INFO 2026-06-08 08:22:47 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 2s. Last read position: chr18:8,718,434 INFO 2026-06-08 08:22:47 MarkDuplicates Tracking 78057 as yet unmatched pairs. 2763 records in RAM. INFO 2026-06-08 08:22:49 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:16:10s. Time for last 1,000,000: 1s. Last read position: chr18:22,540,888 INFO 2026-06-08 08:22:49 MarkDuplicates Tracking 77417 as yet unmatched pairs. 2114 records in RAM. INFO 2026-06-08 08:22:51 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 1s. Last read position: chr18:36,785,652 INFO 2026-06-08 08:22:51 MarkDuplicates Tracking 76820 as yet unmatched pairs. 1517 records in RAM. INFO 2026-06-08 08:22:52 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 1s. Last read position: chr18:55,397,410 INFO 2026-06-08 08:22:52 MarkDuplicates Tracking 76335 as yet unmatched pairs. 1029 records in RAM. INFO 2026-06-08 08:22:54 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:16:15s. Time for last 1,000,000: 1s. Last read position: chr18:75,201,475 INFO 2026-06-08 08:22:54 MarkDuplicates Tracking 75775 as yet unmatched pairs. 467 records in RAM. INFO 2026-06-08 08:22:56 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 1s. Last read position: chr19:871,080 INFO 2026-06-08 08:22:56 MarkDuplicates Tracking 74929 as yet unmatched pairs. 26625 records in RAM. INFO 2026-06-08 08:22:57 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 1s. Last read position: chr19:1,269,391 INFO 2026-06-08 08:22:57 MarkDuplicates Tracking 74145 as yet unmatched pairs. 25839 records in RAM. INFO 2026-06-08 08:22:59 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:16:20s. Time for last 1,000,000: 1s. Last read position: chr19:2,111,691 INFO 2026-06-08 08:22:59 MarkDuplicates Tracking 72897 as yet unmatched pairs. 24590 records in RAM. INFO 2026-06-08 08:23:01 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:16:22s. Time for last 1,000,000: 1s. Last read position: chr19:3,532,033 INFO 2026-06-08 08:23:01 MarkDuplicates Tracking 72063 as yet unmatched pairs. 23755 records in RAM. INFO 2026-06-08 08:23:02 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:16:24s. Time for last 1,000,000: 1s. Last read position: chr19:4,817,828 INFO 2026-06-08 08:23:02 MarkDuplicates Tracking 71375 as yet unmatched pairs. 23065 records in RAM. INFO 2026-06-08 08:23:04 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:16:25s. Time for last 1,000,000: 1s. Last read position: chr19:6,444,168 INFO 2026-06-08 08:23:04 MarkDuplicates Tracking 70620 as yet unmatched pairs. 22310 records in RAM. INFO 2026-06-08 08:23:06 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:16:27s. Time for last 1,000,000: 1s. Last read position: chr19:7,611,758 INFO 2026-06-08 08:23:06 MarkDuplicates Tracking 69922 as yet unmatched pairs. 21606 records in RAM. INFO 2026-06-08 08:23:07 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:16:29s. Time for last 1,000,000: 1s. Last read position: chr19:8,946,341 INFO 2026-06-08 08:23:07 MarkDuplicates Tracking 69287 as yet unmatched pairs. 20971 records in RAM. INFO 2026-06-08 08:23:10 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 2s. Last read position: chr19:10,089,985 INFO 2026-06-08 08:23:10 MarkDuplicates Tracking 68725 as yet unmatched pairs. 20409 records in RAM. INFO 2026-06-08 08:23:12 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:16:33s. Time for last 1,000,000: 2s. Last read position: chr19:10,927,809 INFO 2026-06-08 08:23:12 MarkDuplicates Tracking 67962 as yet unmatched pairs. 19646 records in RAM. INFO 2026-06-08 08:23:13 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:16:35s. Time for last 1,000,000: 1s. Last read position: chr19:12,665,787 INFO 2026-06-08 08:23:13 MarkDuplicates Tracking 67500 as yet unmatched pairs. 19184 records in RAM. INFO 2026-06-08 08:23:15 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:16:36s. Time for last 1,000,000: 1s. Last read position: chr19:13,798,145 INFO 2026-06-08 08:23:15 MarkDuplicates Tracking 66380 as yet unmatched pairs. 18063 records in RAM. INFO 2026-06-08 08:23:17 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:16:38s. Time for last 1,000,000: 1s. Last read position: chr19:14,621,693 INFO 2026-06-08 08:23:17 MarkDuplicates Tracking 65699 as yet unmatched pairs. 17382 records in RAM. INFO 2026-06-08 08:23:18 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:16:40s. Time for last 1,000,000: 1s. Last read position: chr19:15,355,156 INFO 2026-06-08 08:23:18 MarkDuplicates Tracking 64894 as yet unmatched pairs. 16575 records in RAM. INFO 2026-06-08 08:23:20 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:16:42s. Time for last 1,000,000: 1s. Last read position: chr19:17,232,386 INFO 2026-06-08 08:23:20 MarkDuplicates Tracking 64205 as yet unmatched pairs. 15884 records in RAM. INFO 2026-06-08 08:23:22 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 1s. Last read position: chr19:18,363,406 INFO 2026-06-08 08:23:22 MarkDuplicates Tracking 63287 as yet unmatched pairs. 14960 records in RAM. INFO 2026-06-08 08:23:24 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 1s. Last read position: chr19:19,297,124 INFO 2026-06-08 08:23:24 MarkDuplicates Tracking 62392 as yet unmatched pairs. 14065 records in RAM. INFO 2026-06-08 08:23:25 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:16:47s. Time for last 1,000,000: 1s. Last read position: chr19:29,681,806 INFO 2026-06-08 08:23:25 MarkDuplicates Tracking 61662 as yet unmatched pairs. 13333 records in RAM. INFO 2026-06-08 08:23:27 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 1s. Last read position: chr19:35,014,204 INFO 2026-06-08 08:23:27 MarkDuplicates Tracking 60947 as yet unmatched pairs. 12618 records in RAM. INFO 2026-06-08 08:23:29 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 1s. Last read position: chr19:35,267,275 INFO 2026-06-08 08:23:29 MarkDuplicates Tracking 61271 as yet unmatched pairs. 12942 records in RAM. INFO 2026-06-08 08:23:30 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 1s. Last read position: chr19:35,720,500 INFO 2026-06-08 08:23:30 MarkDuplicates Tracking 58938 as yet unmatched pairs. 10607 records in RAM. INFO 2026-06-08 08:23:32 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 1s. Last read position: chr19:36,573,140 INFO 2026-06-08 08:23:32 MarkDuplicates Tracking 57958 as yet unmatched pairs. 9627 records in RAM. INFO 2026-06-08 08:23:34 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 1s. Last read position: chr19:39,137,564 INFO 2026-06-08 08:23:34 MarkDuplicates Tracking 57311 as yet unmatched pairs. 8980 records in RAM. INFO 2026-06-08 08:23:36 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:16:58s. Time for last 1,000,000: 2s. Last read position: chr19:39,389,332 INFO 2026-06-08 08:23:36 MarkDuplicates Tracking 56906 as yet unmatched pairs. 8575 records in RAM. INFO 2026-06-08 08:23:38 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 1s. Last read position: chr19:40,233,776 INFO 2026-06-08 08:23:38 MarkDuplicates Tracking 56464 as yet unmatched pairs. 8130 records in RAM. INFO 2026-06-08 08:23:39 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 1s. Last read position: chr19:41,956,833 INFO 2026-06-08 08:23:39 MarkDuplicates Tracking 55572 as yet unmatched pairs. 7238 records in RAM. INFO 2026-06-08 08:23:41 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 1s. Last read position: chr19:43,494,759 INFO 2026-06-08 08:23:41 MarkDuplicates Tracking 54718 as yet unmatched pairs. 6366 records in RAM. INFO 2026-06-08 08:23:43 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:17:04s. Time for last 1,000,000: 1s. Last read position: chr19:45,409,403 INFO 2026-06-08 08:23:43 MarkDuplicates Tracking 53820 as yet unmatched pairs. 5460 records in RAM. INFO 2026-06-08 08:23:44 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 1s. Last read position: chr19:47,226,571 INFO 2026-06-08 08:23:44 MarkDuplicates Tracking 52931 as yet unmatched pairs. 4567 records in RAM. INFO 2026-06-08 08:23:46 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:17:07s. Time for last 1,000,000: 1s. Last read position: chr19:48,982,828 INFO 2026-06-08 08:23:46 MarkDuplicates Tracking 52116 as yet unmatched pairs. 3752 records in RAM. INFO 2026-06-08 08:23:47 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 1s. Last read position: chr19:49,835,537 INFO 2026-06-08 08:23:47 MarkDuplicates Tracking 51344 as yet unmatched pairs. 2980 records in RAM. INFO 2026-06-08 08:23:49 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:17:10s. Time for last 1,000,000: 1s. Last read position: chr19:52,384,788 INFO 2026-06-08 08:23:49 MarkDuplicates Tracking 50488 as yet unmatched pairs. 2122 records in RAM. INFO 2026-06-08 08:23:51 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 1s. Last read position: chr19:54,465,344 INFO 2026-06-08 08:23:51 MarkDuplicates Tracking 49789 as yet unmatched pairs. 1422 records in RAM. INFO 2026-06-08 08:23:52 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr19:57,328,987 INFO 2026-06-08 08:23:52 MarkDuplicates Tracking 48979 as yet unmatched pairs. 612 records in RAM. INFO 2026-06-08 08:23:54 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:17:15s. Time for last 1,000,000: 1s. Last read position: chr20:492,345 INFO 2026-06-08 08:23:54 MarkDuplicates Tracking 48317 as yet unmatched pairs. 8076 records in RAM. INFO 2026-06-08 08:23:56 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 1s. Last read position: chr20:3,706,408 INFO 2026-06-08 08:23:56 MarkDuplicates Tracking 47807 as yet unmatched pairs. 7566 records in RAM. INFO 2026-06-08 08:23:57 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 1s. Last read position: chr20:17,624,634 INFO 2026-06-08 08:23:57 MarkDuplicates Tracking 47127 as yet unmatched pairs. 6883 records in RAM. INFO 2026-06-08 08:23:59 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 1s. Last read position: chr20:25,274,655 INFO 2026-06-08 08:23:59 MarkDuplicates Tracking 46388 as yet unmatched pairs. 6142 records in RAM. INFO 2026-06-08 08:24:01 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr20:34,743,051 INFO 2026-06-08 08:24:01 MarkDuplicates Tracking 45818 as yet unmatched pairs. 5570 records in RAM. INFO 2026-06-08 08:24:03 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr20:36,793,860 INFO 2026-06-08 08:24:03 MarkDuplicates Tracking 45100 as yet unmatched pairs. 4850 records in RAM. INFO 2026-06-08 08:24:04 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 1s. Last read position: chr20:43,692,159 INFO 2026-06-08 08:24:04 MarkDuplicates Tracking 44337 as yet unmatched pairs. 4086 records in RAM. INFO 2026-06-08 08:24:06 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr20:46,371,391 INFO 2026-06-08 08:24:06 MarkDuplicates Tracking 43611 as yet unmatched pairs. 3359 records in RAM. INFO 2026-06-08 08:24:08 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr20:50,891,884 INFO 2026-06-08 08:24:08 MarkDuplicates Tracking 42966 as yet unmatched pairs. 2712 records in RAM. INFO 2026-06-08 08:24:09 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr20:58,898,941 INFO 2026-06-08 08:24:09 MarkDuplicates Tracking 42210 as yet unmatched pairs. 1954 records in RAM. INFO 2026-06-08 08:24:11 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 1s. Last read position: chr20:62,880,796 INFO 2026-06-08 08:24:11 MarkDuplicates Tracking 41249 as yet unmatched pairs. 989 records in RAM. INFO 2026-06-08 08:24:13 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 1s. Last read position: chr20:63,963,095 INFO 2026-06-08 08:24:13 MarkDuplicates Tracking 40379 as yet unmatched pairs. 119 records in RAM. INFO 2026-06-08 08:24:14 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr21:8,213,192 INFO 2026-06-08 08:24:14 MarkDuplicates Tracking 40100 as yet unmatched pairs. 11948 records in RAM. INFO 2026-06-08 08:24:15 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,107 INFO 2026-06-08 08:24:15 MarkDuplicates Tracking 39195 as yet unmatched pairs. 11027 records in RAM. INFO 2026-06-08 08:24:16 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr21:8,217,322 INFO 2026-06-08 08:24:16 MarkDuplicates Tracking 38342 as yet unmatched pairs. 10173 records in RAM. INFO 2026-06-08 08:24:18 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,283 INFO 2026-06-08 08:24:18 MarkDuplicates Tracking 37700 as yet unmatched pairs. 9530 records in RAM. INFO 2026-06-08 08:24:19 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 0s. Last read position: chr21:8,390,110 INFO 2026-06-08 08:24:19 MarkDuplicates Tracking 37540 as yet unmatched pairs. 9368 records in RAM. INFO 2026-06-08 08:24:20 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr21:8,398,937 INFO 2026-06-08 08:24:20 MarkDuplicates Tracking 37158 as yet unmatched pairs. 8984 records in RAM. INFO 2026-06-08 08:24:21 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,305 INFO 2026-06-08 08:24:21 MarkDuplicates Tracking 36617 as yet unmatched pairs. 8439 records in RAM. INFO 2026-06-08 08:24:23 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr21:8,440,781 INFO 2026-06-08 08:24:23 MarkDuplicates Tracking 36076 as yet unmatched pairs. 7895 records in RAM. INFO 2026-06-08 08:24:24 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,329 INFO 2026-06-08 08:24:24 MarkDuplicates Tracking 35031 as yet unmatched pairs. 6849 records in RAM. INFO 2026-06-08 08:24:26 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,559 INFO 2026-06-08 08:24:26 MarkDuplicates Tracking 36866 as yet unmatched pairs. 8684 records in RAM. INFO 2026-06-08 08:24:27 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr21:25,881,652 INFO 2026-06-08 08:24:27 MarkDuplicates Tracking 33758 as yet unmatched pairs. 5576 records in RAM. INFO 2026-06-08 08:24:28 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chr21:33,349,415 INFO 2026-06-08 08:24:28 MarkDuplicates Tracking 33079 as yet unmatched pairs. 4897 records in RAM. INFO 2026-06-08 08:26:36 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 127s. Last read position: chr21:36,071,091 INFO 2026-06-08 08:26:36 MarkDuplicates Tracking 32382 as yet unmatched pairs. 4200 records in RAM. INFO 2026-06-08 08:26:38 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr21:41,451,182 INFO 2026-06-08 08:26:38 MarkDuplicates Tracking 32174 as yet unmatched pairs. 3991 records in RAM. INFO 2026-06-08 08:26:40 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr21:44,851,328 INFO 2026-06-08 08:26:40 MarkDuplicates Tracking 31540 as yet unmatched pairs. 3357 records in RAM. INFO 2026-06-08 08:26:41 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr21:45,986,948 INFO 2026-06-08 08:26:41 MarkDuplicates Tracking 30719 as yet unmatched pairs. 2536 records in RAM. INFO 2026-06-08 08:26:43 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr21:46,003,938 INFO 2026-06-08 08:26:43 MarkDuplicates Tracking 29925 as yet unmatched pairs. 1742 records in RAM. INFO 2026-06-08 08:26:45 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr21:46,132,032 INFO 2026-06-08 08:26:45 MarkDuplicates Tracking 29267 as yet unmatched pairs. 1084 records in RAM. INFO 2026-06-08 08:26:46 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr22:19,038,984 INFO 2026-06-08 08:26:46 MarkDuplicates Tracking 28039 as yet unmatched pairs. 8367 records in RAM. INFO 2026-06-08 08:26:48 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr22:21,957,098 INFO 2026-06-08 08:26:48 MarkDuplicates Tracking 27250 as yet unmatched pairs. 7577 records in RAM. INFO 2026-06-08 08:26:49 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr22:23,784,061 INFO 2026-06-08 08:26:49 MarkDuplicates Tracking 26088 as yet unmatched pairs. 6415 records in RAM. INFO 2026-06-08 08:26:51 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr22:29,272,417 INFO 2026-06-08 08:26:51 MarkDuplicates Tracking 25846 as yet unmatched pairs. 6173 records in RAM. INFO 2026-06-08 08:26:53 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr22:31,262,047 INFO 2026-06-08 08:26:53 MarkDuplicates Tracking 24686 as yet unmatched pairs. 5013 records in RAM. INFO 2026-06-08 08:26:54 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr22:36,289,169 INFO 2026-06-08 08:26:54 MarkDuplicates Tracking 24100 as yet unmatched pairs. 4427 records in RAM. INFO 2026-06-08 08:26:56 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr22:37,816,312 INFO 2026-06-08 08:26:56 MarkDuplicates Tracking 23297 as yet unmatched pairs. 3623 records in RAM. INFO 2026-06-08 08:26:58 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 2s. Last read position: chr22:39,522,351 INFO 2026-06-08 08:26:58 MarkDuplicates Tracking 22666 as yet unmatched pairs. 2992 records in RAM. INFO 2026-06-08 08:27:00 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 2s. Last read position: chr22:42,213,155 INFO 2026-06-08 08:27:00 MarkDuplicates Tracking 21952 as yet unmatched pairs. 2277 records in RAM. INFO 2026-06-08 08:27:02 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr22:46,690,087 INFO 2026-06-08 08:27:02 MarkDuplicates Tracking 21186 as yet unmatched pairs. 1511 records in RAM. INFO 2026-06-08 08:27:04 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr22:50,525,818 INFO 2026-06-08 08:27:04 MarkDuplicates Tracking 21805 as yet unmatched pairs. 2130 records in RAM. INFO 2026-06-08 08:27:06 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 2s. Last read position: chrX:2,700,883 INFO 2026-06-08 08:27:06 MarkDuplicates Tracking 19729 as yet unmatched pairs. 9631 records in RAM. INFO 2026-06-08 08:27:08 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chrX:3,323,485 INFO 2026-06-08 08:27:08 MarkDuplicates Tracking 18825 as yet unmatched pairs. 8727 records in RAM. INFO 2026-06-08 08:27:09 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chrX:17,801,484 INFO 2026-06-08 08:27:09 MarkDuplicates Tracking 18239 as yet unmatched pairs. 8090 records in RAM. INFO 2026-06-08 08:27:11 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chrX:40,591,310 INFO 2026-06-08 08:27:11 MarkDuplicates Tracking 17716 as yet unmatched pairs. 7567 records in RAM. INFO 2026-06-08 08:27:12 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chrX:47,586,679 INFO 2026-06-08 08:27:12 MarkDuplicates Tracking 16961 as yet unmatched pairs. 6809 records in RAM. INFO 2026-06-08 08:27:14 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chrX:51,896,452 INFO 2026-06-08 08:27:14 MarkDuplicates Tracking 16436 as yet unmatched pairs. 6284 records in RAM. INFO 2026-06-08 08:27:15 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chrX:54,440,714 INFO 2026-06-08 08:27:15 MarkDuplicates Tracking 15568 as yet unmatched pairs. 5415 records in RAM. INFO 2026-06-08 08:27:17 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chrX:71,124,342 INFO 2026-06-08 08:27:17 MarkDuplicates Tracking 14952 as yet unmatched pairs. 4796 records in RAM. INFO 2026-06-08 08:27:18 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chrX:77,599,745 INFO 2026-06-08 08:27:18 MarkDuplicates Tracking 14714 as yet unmatched pairs. 4558 records in RAM. INFO 2026-06-08 08:27:20 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chrX:103,676,429 INFO 2026-06-08 08:27:20 MarkDuplicates Tracking 14133 as yet unmatched pairs. 3976 records in RAM. INFO 2026-06-08 08:27:21 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chrX:123,633,954 INFO 2026-06-08 08:27:21 MarkDuplicates Tracking 13360 as yet unmatched pairs. 3203 records in RAM. INFO 2026-06-08 08:27:23 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chrX:149,490,340 INFO 2026-06-08 08:27:23 MarkDuplicates Tracking 12989 as yet unmatched pairs. 2830 records in RAM. INFO 2026-06-08 08:27:25 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chrX:153,950,343 INFO 2026-06-08 08:27:25 MarkDuplicates Tracking 12273 as yet unmatched pairs. 2113 records in RAM. INFO 2026-06-08 08:27:27 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 2s. Last read position: chrX:154,359,543 INFO 2026-06-08 08:27:27 MarkDuplicates Tracking 11816 as yet unmatched pairs. 1656 records in RAM. INFO 2026-06-08 08:27:29 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 2s. Last read position: chrX:154,442,199 INFO 2026-06-08 08:27:29 MarkDuplicates Tracking 10780 as yet unmatched pairs. 619 records in RAM. INFO 2026-06-08 08:27:31 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chrM:6,420 INFO 2026-06-08 08:27:31 MarkDuplicates Tracking 10096 as yet unmatched pairs. 196 records in RAM. INFO 2026-06-08 08:27:32 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: GL000220.1:111,331 INFO 2026-06-08 08:27:32 MarkDuplicates Tracking 9790 as yet unmatched pairs. 4075 records in RAM. INFO 2026-06-08 08:27:33 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,489 INFO 2026-06-08 08:27:33 MarkDuplicates Tracking 10089 as yet unmatched pairs. 4374 records in RAM. INFO 2026-06-08 08:27:34 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 0s. Last read position: GL000220.1:116,725 INFO 2026-06-08 08:27:34 MarkDuplicates Tracking 6122 as yet unmatched pairs. 406 records in RAM. INFO 2026-06-08 08:27:35 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: GL000220.1:156,673 INFO 2026-06-08 08:27:35 MarkDuplicates Tracking 6135 as yet unmatched pairs. 418 records in RAM. INFO 2026-06-08 08:27:36 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 0s. Last read position: GL000220.1:159,480 INFO 2026-06-08 08:27:36 MarkDuplicates Tracking 5927 as yet unmatched pairs. 210 records in RAM. INFO 2026-06-08 08:27:37 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: GL000220.1:160,724 INFO 2026-06-08 08:27:37 MarkDuplicates Tracking 5722 as yet unmatched pairs. 5 records in RAM. INFO 2026-06-08 08:27:38 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: KI270733.1:128,211 INFO 2026-06-08 08:27:38 MarkDuplicates Tracking 5638 as yet unmatched pairs. 5624 records in RAM. INFO 2026-06-08 08:27:39 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: KI270733.1:132,316 INFO 2026-06-08 08:27:39 MarkDuplicates Tracking 4060 as yet unmatched pairs. 4046 records in RAM. INFO 2026-06-08 08:27:40 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,458 INFO 2026-06-08 08:27:40 MarkDuplicates Tracking 1647 as yet unmatched pairs. 1633 records in RAM. INFO 2026-06-08 08:27:42 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: KI270733.1:172,227 INFO 2026-06-08 08:27:42 MarkDuplicates Tracking 853 as yet unmatched pairs. 839 records in RAM. INFO 2026-06-08 08:27:43 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,711 INFO 2026-06-08 08:27:43 MarkDuplicates Tracking 111 as yet unmatched pairs. 97 records in RAM. INFO 2026-06-08 08:27:44 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,451 INFO 2026-06-08 08:27:44 MarkDuplicates Tracking 24 as yet unmatched pairs. 10 records in RAM. INFO 2026-06-08 08:27:44 MarkDuplicates Read 560620729 records. 0 pairs never matched. INFO 2026-06-08 08:27:56 MarkDuplicates After buildSortedReadEndLists freeMemory: 204132816; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 08:27:56 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk. INFO 2026-06-08 08:28:02 MarkDuplicates Traversing read pair information and detecting duplicates. WARNING 2026-06-08 08:28:02 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1579 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,488 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1627 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,863 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 2506 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,584 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,728 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1289 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,715 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1146 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,158 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1059 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,405 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1200 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,882 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1360 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,696 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1568 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,091 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1203 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,340 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1169 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,005 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1351 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,350 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1060 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,954 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1504 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,718 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1330 INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,535 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 1014 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,982 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 1086 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,850 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 1060 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,604 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 1413 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,811 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 1013 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,578 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 1070 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,121 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 2101 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,374 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,010 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 1190 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,000 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 1319 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,422 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 1278 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,660 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 1440 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,941 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 1020 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,639 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder Large duplicate set. size = 1007 INFO 2026-06-08 08:28:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,653 INFO 2026-06-08 08:28:18 OpticalDuplicateFinder Large duplicate set. size = 1106 INFO 2026-06-08 08:28:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,638 INFO 2026-06-08 08:28:19 OpticalDuplicateFinder Large duplicate set. size = 1007 INFO 2026-06-08 08:28:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,665 INFO 2026-06-08 08:28:19 OpticalDuplicateFinder Large duplicate set. size = 1396 INFO 2026-06-08 08:28:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,226 INFO 2026-06-08 08:28:19 OpticalDuplicateFinder Large duplicate set. size = 1131 INFO 2026-06-08 08:28:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,824 INFO 2026-06-08 08:28:20 OpticalDuplicateFinder Large duplicate set. size = 1061 INFO 2026-06-08 08:28:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,519 INFO 2026-06-08 08:28:20 OpticalDuplicateFinder Large duplicate set. size = 1023 INFO 2026-06-08 08:28:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,320 INFO 2026-06-08 08:28:20 OpticalDuplicateFinder Large duplicate set. size = 1420 INFO 2026-06-08 08:28:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,803 INFO 2026-06-08 08:28:20 OpticalDuplicateFinder Large duplicate set. size = 1492 INFO 2026-06-08 08:28:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,896 INFO 2026-06-08 08:28:20 OpticalDuplicateFinder Large duplicate set. size = 1126 INFO 2026-06-08 08:28:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,173 INFO 2026-06-08 08:28:20 OpticalDuplicateFinder Large duplicate set. size = 1551 INFO 2026-06-08 08:28:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,589 INFO 2026-06-08 08:28:20 OpticalDuplicateFinder Large duplicate set. size = 1204 INFO 2026-06-08 08:28:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,511 INFO 2026-06-08 08:28:20 OpticalDuplicateFinder Large duplicate set. size = 1860 INFO 2026-06-08 08:28:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,968 INFO 2026-06-08 08:28:20 OpticalDuplicateFinder Large duplicate set. size = 1097 INFO 2026-06-08 08:28:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,825 INFO 2026-06-08 08:28:20 OpticalDuplicateFinder Large duplicate set. size = 1312 INFO 2026-06-08 08:28:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,991 INFO 2026-06-08 08:28:21 OpticalDuplicateFinder Large duplicate set. size = 1167 INFO 2026-06-08 08:28:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,731 INFO 2026-06-08 08:28:21 OpticalDuplicateFinder Large duplicate set. size = 1204 INFO 2026-06-08 08:28:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,618 INFO 2026-06-08 08:28:21 OpticalDuplicateFinder Large duplicate set. size = 1107 INFO 2026-06-08 08:28:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,031 INFO 2026-06-08 08:28:21 OpticalDuplicateFinder Large duplicate set. size = 1122 INFO 2026-06-08 08:28:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,426 INFO 2026-06-08 08:28:21 OpticalDuplicateFinder Large duplicate set. size = 1317 INFO 2026-06-08 08:28:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,452 INFO 2026-06-08 08:28:21 OpticalDuplicateFinder Large duplicate set. size = 1025 INFO 2026-06-08 08:28:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,315 INFO 2026-06-08 08:28:30 OpticalDuplicateFinder Large duplicate set. size = 1023 INFO 2026-06-08 08:28:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,289 INFO 2026-06-08 08:29:01 OpticalDuplicateFinder Large duplicate set. size = 1309 INFO 2026-06-08 08:29:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,197 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1339 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,505 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 2203 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,548 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,294 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1035 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,097 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1049 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,745 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1875 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,494 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 3393 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,758 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,631 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,188 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1259 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,885 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1161 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,451 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1405 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,034 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1093 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,621 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1135 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,399 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1361 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,130 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1005 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,931 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1294 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,980 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1006 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,208 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1194 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,591 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1040 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,160 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1321 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,480 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1276 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,652 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1028 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,600 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1113 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,468 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1082 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,803 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1012 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,924 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1379 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,696 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1369 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,325 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1507 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,306 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1067 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,699 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1662 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,132 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder Large duplicate set. size = 1144 INFO 2026-06-08 08:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,505 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1601 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,504 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1940 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,753 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1090 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,653 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1113 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,676 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1011 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,522 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1291 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,110 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1052 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,598 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1229 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,419 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1988 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,918 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 2049 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,584 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,493 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 2470 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,528 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,846 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1663 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,804 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1271 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,104 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1072 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,252 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1706 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,676 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1023 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,426 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1453 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,262 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1749 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,726 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1168 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,225 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1388 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,796 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1534 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,870 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1950 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,621 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1231 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,687 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder Large duplicate set. size = 1061 INFO 2026-06-08 08:29:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,110 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1328 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,215 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1454 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,078 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1942 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,990 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1040 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,031 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1003 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,439 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1022 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,935 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1449 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,878 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1026 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,017 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1188 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,329 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1014 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,235 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1030 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,923 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1128 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,999 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1004 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,579 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1037 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,463 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1046 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,145 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1070 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,636 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1289 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,286 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1110 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,650 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1819 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,041 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1130 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,466 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1595 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,982 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1099 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,995 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1108 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,155 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1361 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,373 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1270 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,911 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1164 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,440 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 2491 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,874 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,689 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1488 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,399 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1395 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,309 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1214 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,627 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1031 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,882 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder Large duplicate set. size = 1154 INFO 2026-06-08 08:29:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,551 INFO 2026-06-08 08:29:19 OpticalDuplicateFinder Large duplicate set. size = 1037 INFO 2026-06-08 08:29:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,880 INFO 2026-06-08 08:29:19 OpticalDuplicateFinder Large duplicate set. size = 1155 INFO 2026-06-08 08:29:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,743 INFO 2026-06-08 08:29:19 OpticalDuplicateFinder Large duplicate set. size = 1294 INFO 2026-06-08 08:29:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,848 INFO 2026-06-08 08:29:19 OpticalDuplicateFinder Large duplicate set. size = 1013 INFO 2026-06-08 08:29:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,079 INFO 2026-06-08 08:29:19 OpticalDuplicateFinder Large duplicate set. size = 1083 INFO 2026-06-08 08:29:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,326 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1191 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,489 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 2282 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,923 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,108 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1423 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,261 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 2137 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,122 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,970 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 2107 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,939 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,128 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1220 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,674 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1011 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,504 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1287 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,964 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1034 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,103 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1088 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,610 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1168 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,930 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1211 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,803 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1238 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,205 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1051 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,593 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1023 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,563 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1134 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,575 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1781 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,988 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1606 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,389 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1663 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,748 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1107 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,655 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1285 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,793 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1319 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,549 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1158 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,525 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1033 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,597 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1086 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,418 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1615 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,227 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1080 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,993 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1180 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,955 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1539 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,427 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1104 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,775 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 2556 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,295 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,695 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1957 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,072 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder Large duplicate set. size = 1107 INFO 2026-06-08 08:29:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,411 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1031 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,277 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1098 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,530 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1285 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,468 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1123 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,318 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1179 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,480 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1255 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,347 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1216 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,114 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 2130 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,961 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,646 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1094 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,938 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1490 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,128 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1063 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,642 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1262 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,746 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1056 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,744 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1378 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,877 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1066 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,938 INFO 2026-06-08 08:29:21 OpticalDuplicateFinder Large duplicate set. size = 1796 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,559 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1377 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,216 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1689 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,932 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 2042 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,429 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,288 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1583 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,160 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1987 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,797 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 2305 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,424 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,449 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1295 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,577 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1057 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,097 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1038 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,996 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1536 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,203 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1939 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,852 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1402 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,085 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1094 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,082 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1607 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,719 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 2243 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,506 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,338 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1024 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,972 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 2259 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,049 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,372 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1155 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,714 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1020 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,071 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1541 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,332 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1203 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,415 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 3203 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,431 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,458 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,863 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1103 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,218 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 4451 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,349 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,683 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,850 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,824 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1188 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,704 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1421 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,300 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1356 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,836 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1092 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,289 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1061 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,063 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1094 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,793 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1593 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,901 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 2233 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,952 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,209 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1155 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,498 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1873 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,963 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1115 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,538 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1519 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,700 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 2329 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,962 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,483 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1183 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,036 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1296 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,702 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1131 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,842 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1203 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,367 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1283 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,072 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 2910 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,628 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,374 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1123 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,896 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1103 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,546 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 3526 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,724 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,280 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,486 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1234 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,157 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1366 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,567 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder Large duplicate set. size = 1626 INFO 2026-06-08 08:29:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,785 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1215 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,222 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1025 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,378 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1062 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,619 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1646 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,194 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1020 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,120 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1165 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,213 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1103 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,179 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1176 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,505 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1023 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,614 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1320 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,664 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1077 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,544 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1115 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,115 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1356 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,433 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1131 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,673 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1335 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,155 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1098 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,601 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1299 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,673 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1447 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,412 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 2193 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,552 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,221 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 5107 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,186 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,069 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,827 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,387 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 5,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,975 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 2343 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,281 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,471 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1451 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,168 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1360 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,320 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1179 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,721 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1143 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,020 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1230 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,802 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1615 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,230 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1296 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,138 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1395 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,800 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1440 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,032 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1252 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,507 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1225 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,753 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1228 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,696 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1137 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,640 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1481 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,815 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1062 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,273 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1161 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,917 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1286 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,357 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1607 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,737 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1440 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,241 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1048 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,092 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder Large duplicate set. size = 1337 INFO 2026-06-08 08:29:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,955 INFO 2026-06-08 08:29:24 OpticalDuplicateFinder Large duplicate set. size = 1366 INFO 2026-06-08 08:29:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,628 INFO 2026-06-08 08:29:24 OpticalDuplicateFinder Large duplicate set. size = 1530 INFO 2026-06-08 08:29:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,100 INFO 2026-06-08 08:29:24 OpticalDuplicateFinder Large duplicate set. size = 1120 INFO 2026-06-08 08:29:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,840 INFO 2026-06-08 08:29:24 OpticalDuplicateFinder Large duplicate set. size = 1017 INFO 2026-06-08 08:29:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,973 INFO 2026-06-08 08:29:24 OpticalDuplicateFinder Large duplicate set. size = 1120 INFO 2026-06-08 08:29:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,485 INFO 2026-06-08 08:29:24 OpticalDuplicateFinder Large duplicate set. size = 1428 INFO 2026-06-08 08:29:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,761 INFO 2026-06-08 08:29:24 OpticalDuplicateFinder Large duplicate set. size = 1298 INFO 2026-06-08 08:29:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,407 INFO 2026-06-08 08:29:24 OpticalDuplicateFinder Large duplicate set. size = 1172 INFO 2026-06-08 08:29:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,110 INFO 2026-06-08 08:29:24 OpticalDuplicateFinder Large duplicate set. size = 1209 INFO 2026-06-08 08:29:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,220 INFO 2026-06-08 08:29:24 OpticalDuplicateFinder Large duplicate set. size = 1313 INFO 2026-06-08 08:29:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,389 INFO 2026-06-08 08:29:24 OpticalDuplicateFinder Large duplicate set. size = 1025 INFO 2026-06-08 08:29:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,925 INFO 2026-06-08 08:29:33 OpticalDuplicateFinder Large duplicate set. size = 1254 INFO 2026-06-08 08:29:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,006 INFO 2026-06-08 08:29:33 OpticalDuplicateFinder Large duplicate set. size = 1619 INFO 2026-06-08 08:29:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,689 INFO 2026-06-08 08:29:33 OpticalDuplicateFinder Large duplicate set. size = 1060 INFO 2026-06-08 08:29:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,621 INFO 2026-06-08 08:29:33 OpticalDuplicateFinder Large duplicate set. size = 1202 INFO 2026-06-08 08:29:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,157 INFO 2026-06-08 08:29:33 OpticalDuplicateFinder Large duplicate set. size = 1063 INFO 2026-06-08 08:29:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,624 INFO 2026-06-08 08:29:33 OpticalDuplicateFinder Large duplicate set. size = 1315 INFO 2026-06-08 08:29:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,484 INFO 2026-06-08 08:29:33 OpticalDuplicateFinder Large duplicate set. size = 1262 INFO 2026-06-08 08:29:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,927 INFO 2026-06-08 08:29:33 OpticalDuplicateFinder Large duplicate set. size = 1340 INFO 2026-06-08 08:29:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,568 INFO 2026-06-08 08:29:33 OpticalDuplicateFinder Large duplicate set. size = 1024 INFO 2026-06-08 08:29:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,707 INFO 2026-06-08 08:29:33 OpticalDuplicateFinder Large duplicate set. size = 1272 INFO 2026-06-08 08:29:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,254 INFO 2026-06-08 08:29:39 MarkDuplicates Traversing fragment information and detecting duplicates. WARNING 2026-06-08 08:29:39 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 08:30:37 MarkDuplicates Sorting list of duplicate records. INFO 2026-06-08 08:30:41 MarkDuplicates After generateDuplicateIndexes freeMemory: 203833864; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 08:30:41 MarkDuplicates Marking 348643788 records as duplicates. INFO 2026-06-08 08:30:41 MarkDuplicates Found 15834956 optical duplicate clusters. INFO 2026-06-08 08:30:41 MarkDuplicates Reads are assumed to be ordered by: coordinate INFO 2026-06-08 08:30:57 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:15s. Time for last 10,000,000: 15s. Last read position: chr1:25,809,140 INFO 2026-06-08 08:31:13 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:31s. Time for last 10,000,000: 15s. Last read position: chr1:65,854,766 INFO 2026-06-08 08:31:28 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:46s. Time for last 10,000,000: 15s. Last read position: chr1:147,166,581 INFO 2026-06-08 08:31:43 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:02s. Time for last 10,000,000: 15s. Last read position: chr1:156,978,206 INFO 2026-06-08 08:31:59 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:18s. Time for last 10,000,000: 15s. Last read position: chr1:211,978,492 INFO 2026-06-08 08:32:15 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:33s. Time for last 10,000,000: 15s. Last read position: chr2:28,800,157 INFO 2026-06-08 08:32:31 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:49s. Time for last 10,000,000: 15s. Last read position: chr2:108,719,569 INFO 2026-06-08 08:32:46 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:04s. Time for last 10,000,000: 15s. Last read position: chr2:200,477,875 INFO 2026-06-08 08:33:01 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:19s. Time for last 10,000,000: 15s. Last read position: chr2:215,391,709 INFO 2026-06-08 08:33:16 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:35s. Time for last 10,000,000: 15s. Last read position: chr2:226,798,238 INFO 2026-06-08 08:33:32 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:51s. Time for last 10,000,000: 16s. Last read position: chr3:46,439,303 INFO 2026-06-08 08:33:48 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:07s. Time for last 10,000,000: 15s. Last read position: chr3:120,328,747 INFO 2026-06-08 08:34:05 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:23s. Time for last 10,000,000: 16s. Last read position: chr3:188,609,390 INFO 2026-06-08 08:34:21 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:39s. Time for last 10,000,000: 16s. Last read position: chr4:103,149,204 INFO 2026-06-08 08:34:38 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:56s. Time for last 10,000,000: 16s. Last read position: chr5:56,815,792 INFO 2026-06-08 08:34:53 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:12s. Time for last 10,000,000: 15s. Last read position: chr5:150,117,740 INFO 2026-06-08 08:35:09 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:27s. Time for last 10,000,000: 15s. Last read position: chr6:22,042,966 INFO 2026-06-08 08:35:24 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:43s. Time for last 10,000,000: 15s. Last read position: chr6:43,206,355 INFO 2026-06-08 08:35:40 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:58s. Time for last 10,000,000: 15s. Last read position: chr6:149,683,840 INFO 2026-06-08 08:35:56 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:14s. Time for last 10,000,000: 15s. Last read position: chr7:44,104,707 INFO 2026-06-08 08:36:11 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:30s. Time for last 10,000,000: 15s. Last read position: chr7:94,545,678 INFO 2026-06-08 08:36:27 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:45s. Time for last 10,000,000: 15s. Last read position: chr7:149,011,885 INFO 2026-06-08 08:36:43 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:02s. Time for last 10,000,000: 16s. Last read position: chr8:73,422,657 INFO 2026-06-08 08:37:00 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:18s. Time for last 10,000,000: 16s. Last read position: chr8:143,864,720 INFO 2026-06-08 08:37:17 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:35s. Time for last 10,000,000: 16s. Last read position: chr9:71,729,888 INFO 2026-06-08 08:37:33 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:51s. Time for last 10,000,000: 16s. Last read position: chr9:134,814,851 INFO 2026-06-08 08:37:49 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:08s. Time for last 10,000,000: 16s. Last read position: chr10:68,044,494 INFO 2026-06-08 08:38:05 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:23s. Time for last 10,000,000: 15s. Last read position: chr11:314,276 INFO 2026-06-08 08:38:21 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:40s. Time for last 10,000,000: 16s. Last read position: chr11:47,767,078 INFO 2026-06-08 08:38:38 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:56s. Time for last 10,000,000: 16s. Last read position: chr11:70,407,360 INFO 2026-06-08 08:38:54 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:12s. Time for last 10,000,000: 16s. Last read position: chr12:6,891,822 INFO 2026-06-08 08:39:10 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:28s. Time for last 10,000,000: 16s. Last read position: chr12:57,183,812 INFO 2026-06-08 08:39:28 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:47s. Time for last 10,000,000: 18s. Last read position: chr12:132,570,524 INFO 2026-06-08 08:39:45 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:04s. Time for last 10,000,000: 17s. Last read position: chr14:34,546,736 INFO 2026-06-08 08:40:02 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:20s. Time for last 10,000,000: 16s. Last read position: chr14:104,947,969 INFO 2026-06-08 08:40:17 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:36s. Time for last 10,000,000: 15s. Last read position: chr15:68,303,813 INFO 2026-06-08 08:40:33 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:51s. Time for last 10,000,000: 15s. Last read position: chr16:2,762,059 INFO 2026-06-08 08:40:49 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:07s. Time for last 10,000,000: 15s. Last read position: chr16:21,837,680 INFO 2026-06-08 08:41:04 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:22s. Time for last 10,000,000: 15s. Last read position: chr16:53,686,454 INFO 2026-06-08 08:41:20 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:38s. Time for last 10,000,000: 15s. Last read position: chr16:89,907,452 INFO 2026-06-08 08:41:36 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:54s. Time for last 10,000,000: 15s. Last read position: chr17:37,585,326 INFO 2026-06-08 08:41:51 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:09s. Time for last 10,000,000: 15s. Last read position: chr17:50,187,495 INFO 2026-06-08 08:42:07 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:25s. Time for last 10,000,000: 15s. Last read position: chr17:50,192,801 INFO 2026-06-08 08:42:22 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:41s. Time for last 10,000,000: 15s. Last read position: chr17:50,198,439 INFO 2026-06-08 08:42:40 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:11:58s. Time for last 10,000,000: 17s. Last read position: chr17:80,346,766 INFO 2026-06-08 08:42:57 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:16s. Time for last 10,000,000: 17s. Last read position: chr19:2,111,691 INFO 2026-06-08 08:43:15 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:33s. Time for last 10,000,000: 17s. Last read position: chr19:14,621,693 INFO 2026-06-08 08:43:32 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:50s. Time for last 10,000,000: 16s. Last read position: chr19:39,137,564 INFO 2026-06-08 08:43:47 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:06s. Time for last 10,000,000: 15s. Last read position: chr19:54,465,344 INFO 2026-06-08 08:44:03 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:22s. Time for last 10,000,000: 15s. Last read position: chr20:50,891,884 INFO 2026-06-08 08:44:17 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:36s. Time for last 10,000,000: 14s. Last read position: chr21:8,400,305 INFO 2026-06-08 08:44:32 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:51s. Time for last 10,000,000: 14s. Last read position: chr21:46,003,938 INFO 2026-06-08 08:44:48 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:06s. Time for last 10,000,000: 15s. Last read position: chr22:42,213,155 INFO 2026-06-08 08:45:06 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:24s. Time for last 10,000,000: 17s. Last read position: chrX:71,124,342 INFO 2026-06-08 08:45:24 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:42s. Time for last 10,000,000: 18s. Last read position: GL000220.1:115,489 INFO 2026-06-08 08:45:40 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:14:58s. Time for last 10,000,000: 15s. Last read position: KI270733.1:178,451 INFO 2026-06-08 08:45:52 MarkDuplicates Writing complete. Closing input iterator. INFO 2026-06-08 08:45:52 MarkDuplicates Duplicate Index cleanup. INFO 2026-06-08 08:45:52 MarkDuplicates Getting Memory Stats. INFO 2026-06-08 08:45:52 MarkDuplicates Before output close freeMemory: 203854864; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 08:45:52 MarkDuplicates Closed outputs. Getting more Memory Stats. INFO 2026-06-08 08:45:52 MarkDuplicates After output close freeMemory: 104061040; totalMemory: 134217728; maxMemory: 63585648640 [Mon Jun 08 08:45:52 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 39.27 minutes. Runtime.totalMemory()=134217728 ls: *cram: No such file or directory ls: *.crai: No such file or directory