Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/89210853ee884f1669710f868c6b9f/NTC_0001_0001_23H5VFLT4_s15.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/9055d4b0da3d2fb2a1c6cf662c7616/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/7d0603be52058e1555030782932a15/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/7d0603be52058e1555030782932a15/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/0caad1614725c4cce40a4864004506/NTC_0001_0001_23H5VFLT4_s15.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

Reading reference gene model ref_annot.bed ... Done
Loading SAM/BAM file ...  Finished
Total 5970 usable reads were sampled