Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/e4f49c816de281bfb2458bf64d0768/tih_rna_sample_00088_23H5VFLT4_s02.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/9055d4b0da3d2fb2a1c6cf662c7616/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/b0049cfdafa47d3510934bb54e3af8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/b0049cfdafa47d3510934bb54e3af8/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/444a4a563b71eaad4fb7edb5ef1214/tih_rna_sample_00088_23H5VFLT4_s02.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 348974128
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00088_23H5VFLT4_s02.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	348974128
Known Splicing Events:	346436961
Partial Novel Splicing Events:	1516642
Novel Splicing Events:	911565
Filtered Splicing Events:	108960

Total splicing  Junctions:	524408
Known Splicing Junctions:	268218
Partial Novel Splicing Junctions:	138433
Novel Splicing Junctions:	117757

===================================================================
Create BED file ...
Create Interact file ...