Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/89210853ee884f1669710f868c6b9f/NTC_0001_0001_23H5VFLT4_s15.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/b193be4a991d682680d73e8516ce49/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/b193be4a991d682680d73e8516ce49/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/0caad1614725c4cce40a4864004506/NTC_0001_0001_23H5VFLT4_s15.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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