.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_READDUPLICATION (NTC_0001_0001_23H5VFLT4_s15)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/b193be4a991d682680d73e8516ce49/.command.sh
Size: 419 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_READDUPLICATION (NTC_0001_0001_23H5VFLT4_s15)
Attempt

Content

#!/bin/bash -euo pipefail
read_duplication.py \
    -i NTC_0001_0001_23H5VFLT4_s15.Aligned.sortedByCoord.out.bam NTC_0001_0001_23H5VFLT4_s15.Aligned.sortedByCoord.out.bam.bai \
    -o NTC_0001_0001_23H5VFLT4_s15 \


cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_READDUPLICATION":
    rseqc: $(read_duplication.py --version | sed -e "s/read_duplication.py //g")
END_VERSIONS